(Circular) (Six-base) MAPSORT of: pF1KA0437.seq Check: 6980 from: 1 to: 7901 pF1KA0437 7901 bp With 182 enzymes: SgfI * June 20, 2008 10:19 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 3464 3464 Size: 7901 AccI GT'mk_AC Cuts at: 3802 4939 3802 Size: 1137 6764 Acc65I G'GTAC_C Cuts at: 4917 4917 Size: 7901 AclI AA'CG_TT Cuts at: 7741 7741 Size: 7901 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 436 1024 2197 3122 4312 4429 5726 6158 6511 Size: 588 1173 925 1190 117 1297 432 353 Cuts at: 6511 7173 436 Size: 662 1164 Fragments arranged by size: 1297 1190 1173 1164 925 662 588 432 353 117 AflII C'TTAA_G Cuts at: 126 126 Size: 7901 AflIII A'CryG_T Cuts at: 923 3944 5253 7053 7334 923 Size: 3021 1309 1800 281 1490 Fragments arranged by size: 3021 1800 1490 1309 281 AgeI A'CCGG_T Cuts at: 712 712 Size: 7901 AhdI GACnn_n'nnGTC Cuts at: 3147 3798 3147 Size: 651 7250 AleI CACnn'nnGTG Cuts at: 2631 2631 Size: 7901 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 4564 4564 Size: 7901 AlwNI CAG_nnn'CTG Cuts at: 238 829 2967 5206 6644 238 Size: 591 2138 2239 1438 1495 Fragments arranged by size: 2239 2138 1495 1438 591 ApaLI G'TGCA_C Cuts at: 1632 6739 1632 Size: 5107 2794 ApoI r'AATT_y Cuts at: 376 462 1681 2047 4905 7254 7510 376 Size: 86 1219 366 2858 2349 256 767 Fragments arranged by size: 2858 2349 1219 767 366 256 86 AseI AT'TA_AT Cuts at: 20 2246 3071 20 Size: 2226 825 4850 Fragments arranged by size: 4850 2226 825 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 7901 AvaI C'yCGr_G Cuts at: 4655 4751 4868 4921 4655 Size: 96 117 53 7635 Fragments arranged by size: 7635 117 96 53 AvrII C'CTAG_G Cuts at: 3597 3597 Size: 7901 BamHI G'GATC_C Cuts at: 248 1341 1488 3593 4926 248 Size: 1093 147 2105 1333 3223 Fragments arranged by size: 3223 2105 1333 1093 147 BanI G'GyrC_C Cuts at: 1329 3093 3201 4662 4917 5331 5579 5614 1329 Size: 1764 108 1461 255 414 248 35 3616 Fragments arranged by size: 3616 1764 1461 414 255 248 108 35 BanII G_rGCy'C Cuts at: 875 1082 1781 2482 2764 3698 4585 4601 4915 Size: 207 699 701 282 934 887 16 314 Cuts at: 4915 5945 875 Size: 1030 2831 Fragments arranged by size: 2831 1030 934 887 701 699 314 282 207 16 BbeI G_GCGC'C Cuts at: 4666 5335 5583 4666 Size: 669 248 6984 Fragments arranged by size: 6984 669 248 BbsI GAAGACnn'nnnn_ Cuts at: 2095 2122 2411 3593 2095 Size: 27 289 1182 6403 Fragments arranged by size: 6403 1182 289 27 BbvCI CC'TCA_GC Cuts at: 177 177 Size: 7901 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 4250 4284 4434 4468 4250 Size: 34 150 34 7683 Fragments arranged by size: 7683 150 34 34 BciVI GTATCCnnnnn_n' Cuts at: 1451 5799 6855 7901 1451 Size: 4348 1056 1046 1451 Fragments arranged by size: 4348 1451 1056 1046 BclI T'GATC_A Cuts at: 1844 3078 5421 1844 Size: 1234 2343 4324 Fragments arranged by size: 4324 2343 1234 BfrBI ATG'CAT Cuts at: 4541 4541 Size: 7901 BglI GCCn_nnn'nGGC Cuts at: 1243 4660 1243 Size: 3417 4484 BglII A'GATC_T Cuts at: 954 2147 5416 7453 954 Size: 1193 3269 2037 1402 Fragments arranged by size: 3269 2037 1402 1193 BlpI GC'TnA_GC Cuts at: 3428 4790 5013 3428 Size: 1362 223 6316 Fragments arranged by size: 6316 1362 223 Bme1580I G_kGCm'C Cuts at: 1239 1636 4175 5526 5619 6743 1239 Size: 397 2539 1351 93 1124 2397 Fragments arranged by size: 2539 2397 1351 1124 397 93 BmgBI CAC'GTC Cuts at: 3945 3990 3945 Size: 45 7856 BmrI ACTGGGnnnn_n' Cuts at: 2242 3230 4228 4488 5113 5194 5529 7673 2242 Size: 988 998 260 625 81 335 2144 2470 Fragments arranged by size: 2470 2144 998 988 625 335 260 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1551 2661 2778 6268 1551 Size: 1110 117 3490 3184 Fragments arranged by size: 3490 3184 1110 117 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 215 1795 1835 2515 2944 2998 3636 4088 4494 Size: 1580 40 680 429 54 638 452 406 Cuts at: 4494 4615 215 Size: 121 3501 Fragments arranged by size: 3501 1580 680 638 452 429 406 121 54 40 Bpu10I CC'TnA_GC Cuts at: 177 300 2476 3664 4579 177 Size: 123 2176 1188 915 3499 Fragments arranged by size: 3499 2176 1188 915 123 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 889 1281 2107 2890 3879 5077 5956 6670 6968 Size: 392 826 783 989 1198 879 714 298 Cuts at: 6968 889 Size: 1822 Fragments arranged by size: 1822 1198 989 879 826 783 714 392 298 BsaI GGTCTCn'nnnn_ Cuts at: 177 2191 4508 7605 177 Size: 2014 2317 3097 473 Fragments arranged by size: 3097 2317 2014 473 BsaAI yAC'GTr Cuts at: 926 4395 5254 926 Size: 3469 859 3573 Fragments arranged by size: 3573 3469 859 BsaBI GATnn'nnATC Cuts at: 6 496 502 1315 5415 7452 6 Size: 490 6 813 4100 2037 455 Fragments arranged by size: 4100 2037 813 490 455 6 BsaHI Gr'CG_yC Cuts at: 2416 3821 4473 4663 5332 5580 6282 7778 2416 Size: 1405 652 190 669 248 702 1496 2539 Fragments arranged by size: 2539 1496 1405 702 669 652 248 190 BsaWI w'CCGG_w Cuts at: 712 1307 3020 3418 3590 5090 5611 6289 6700 Size: 595 1713 398 172 1500 521 678 411 Cuts at: 6700 6847 7121 712 Size: 147 274 1492 Fragments arranged by size: 1713 1500 1492 678 595 521 411 398 274 172 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1768 1798 3385 3415 1768 Size: 30 1587 30 6254 Fragments arranged by size: 6254 1587 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 165 295 298 586 1079 2707 2995 4023 4083 Size: 130 3 288 493 1628 288 1028 60 Cuts at: 4083 4275 4852 165 Size: 192 577 3214 Fragments arranged by size: 3214 1628 1028 577 493 288 288 192 130 60 3 BseYI C'CCAG_C Cuts at: 189 1012 2006 2704 3055 3315 3824 4552 4573 Size: 823 994 698 351 260 509 728 21 Cuts at: 4573 5326 6084 6749 7157 189 Size: 753 758 665 408 933 Fragments arranged by size: 994 933 823 758 753 728 698 665 509 408 351 260 21 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 227 935 3443 227 Size: 708 2508 4685 Fragments arranged by size: 4685 2508 708 BsiEI CG_ry'CG Cuts at: 104 5443 5489 6719 104 Size: 5339 46 1230 1286 Fragments arranged by size: 5339 1286 1230 46 BsiHKAI G_wGCw'C Cuts at: 1636 2547 2764 3698 4915 5693 5883 6743 1636 Size: 911 217 934 1217 778 190 860 2794 Fragments arranged by size: 2794 1217 934 911 860 778 217 190 BsmI GAATG_Cn' Cuts at: 1182 3269 1182 Size: 2087 5814 BsmBI CGTCTCn'nnnn_ Cuts at: 1897 2689 1897 Size: 792 7109 Bsp1286I G_dGCh'C Cuts at: 875 1082 1239 1636 1781 2482 2547 2764 3698 Size: 207 157 397 145 701 65 217 934 Cuts at: 3698 4175 4585 4601 4915 5526 5619 5693 5883 Size: 477 410 16 314 611 93 74 190 Cuts at: 5883 5945 6743 875 Size: 62 798 2033 Fragments arranged by size: 2033 934 798 701 611 477 410 397 314 217 207 190 157 145 93 74 65 62 16 BspEI T'CCGG_A Cuts at: 1307 1307 Size: 7901 BspHI T'CATG_A Cuts at: 1616 1911 3362 6333 1616 Size: 295 1451 2971 3184 Fragments arranged by size: 3184 2971 1451 295 BspMI ACCTGCnnnn'nnnn_ Cuts at: 3464 4556 4951 5165 5467 5848 3464 Size: 1092 395 214 302 381 5517 Fragments arranged by size: 5517 1092 395 381 302 214 BsrBI CCG'CTC Cuts at: 50 865 3672 4789 6193 6247 7731 7896 50 Size: 815 2807 1117 1404 54 1484 165 55 Fragments arranged by size: 2807 1484 1404 1117 815 165 55 54 BsrDI GCAATG_nn' Cuts at: 5813 5813 Size: 7901 BsrFI r'CCGG_y Cuts at: 168 712 2846 2858 3757 4524 5899 6080 168 Size: 544 2134 12 899 767 1375 181 1989 Fragments arranged by size: 2134 1989 1375 899 767 544 181 12 BssSI C'ACGA_G Cuts at: 3040 3924 6172 6880 3040 Size: 884 2248 708 4061 Fragments arranged by size: 4061 2248 884 708 BstAPI GCAn_nnn'nTGC Cuts at: 1234 1890 5278 1234 Size: 656 3388 3857 Fragments arranged by size: 3857 3388 656 BstBI TT'CG_AA Cuts at: 3967 6262 3967 Size: 2295 5606 BstXI CCAn_nnnn'nTGG Cuts at: 2610 2610 Size: 7901 BstYI r'GATC_y Cuts at: 1 248 857 954 1341 1488 2147 3593 4364 Size: 247 609 97 387 147 659 1446 771 Cuts at: 4364 4403 4926 5393 5416 5751 5997 6303 6315 Size: 39 523 467 23 335 246 306 12 Cuts at: 6315 6401 7453 1 Size: 86 1052 449 Fragments arranged by size: 1446 1052 771 659 609 523 467 449 387 335 306 247 246 147 97 86 39 23 12 BtgI C'CryG_G Cuts at: 107 875 1597 1610 107 Size: 768 722 13 6398 Fragments arranged by size: 6398 768 722 13 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 2966 5851 6032 6195 2966 Size: 2885 181 163 4672 Fragments arranged by size: 4672 2885 181 163 BtsI GCAGTG_nn' Cuts at: 918 1446 3528 3870 3909 4151 5144 918 Size: 528 2082 342 39 242 993 3675 Fragments arranged by size: 3675 2082 993 528 342 242 39 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 3600 3635 3600 Size: 35 7866 DraI TTT'AAA Cuts at: 4900 4900 Size: 7901 DrdI GACnn_nn'nnGTC Cuts at: 5607 6951 5607 Size: 1344 6557 EaeI y'GGCC_r Cuts at: 1751 2612 2853 3759 4625 5486 5660 6051 6078 Size: 861 241 906 866 861 174 391 27 Cuts at: 6078 7423 1751 Size: 1345 2229 Fragments arranged by size: 2229 1345 906 866 861 861 391 241 174 27 EagI C'GGCC_G Cuts at: 5486 5486 Size: 7901 EarI CTCTTCn'nnn_ Cuts at: 362 2552 2752 4291 4456 4829 5924 6134 362 Size: 2190 200 1539 165 373 1095 210 2129 Fragments arranged by size: 2190 2129 1539 1095 373 210 200 165 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 275 4772 6109 6851 6997 7711 275 Size: 4497 1337 742 146 714 465 Fragments arranged by size: 4497 1337 742 714 465 146 EcoICRI GAG'CTC Cuts at: 2762 3696 4913 2762 Size: 934 1217 5750 Fragments arranged by size: 5750 1217 934 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 215 436 1024 1795 1835 2197 2515 2944 2998 Size: 221 588 771 40 362 318 429 54 Cuts at: 2998 3122 3636 4088 4312 4429 4494 4615 5726 Size: 124 514 452 224 117 65 121 1111 Cuts at: 5726 6158 6511 7173 215 Size: 432 353 662 943 Fragments arranged by size: 1111 943 771 662 588 514 452 432 429 362 353 318 224 221 124 121 117 65 54 40 EcoNI CCTnn'n_nnAGG Cuts at: 700 4828 700 Size: 4128 3773 EcoO109I rG'GnC_Cy Cuts at: 235 659 3463 3602 4782 4887 5040 235 Size: 424 2804 139 1180 105 153 3096 Fragments arranged by size: 3096 2804 1180 424 153 139 105 EcoRI G'AATT_C Cuts at: 4905 4905 Size: 7901 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 1721 3798 5920 1721 Size: 2077 2122 3702 Fragments arranged by size: 3702 2122 2077 FspI TGC'GCA Cuts at: 5682 5682 Size: 7901 HaeII r_GCGC'y Cuts at: 4666 5335 5583 6813 7584 4666 Size: 669 248 1230 771 4983 Fragments arranged by size: 4983 1230 771 669 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 307 339 849 881 1513 1545 1768 1800 2782 Size: 32 510 32 632 32 223 32 982 Cuts at: 2782 2814 3133 3165 3784 3816 4101 4133 4492 Size: 32 319 32 619 32 285 32 359 Cuts at: 4492 4524 5743 5773 5775 5805 307 Size: 32 1219 30 2 30 2403 Fragments arranged by size: 2403 1219 982 632 619 510 359 319 285 223 32 32 32 32 32 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 1452 4209 4940 1452 Size: 2757 731 4413 Fragments arranged by size: 4413 2757 731 HindIII A'AGCT_T Cuts at: 3767 3767 Size: 7901 HpaI GTT'AAC Cuts at: 1452 1452 Size: 7901 KasI G'GCGC_C Cuts at: 4662 5331 5579 4662 Size: 669 248 6984 Fragments arranged by size: 6984 669 248 KpnI G_GTAC'C Cuts at: 4921 4921 Size: 7901 MluI A'CGCG_T Cuts at: 7334 7334 Size: 7901 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 344 350 1369 1490 1651 2043 2060 2420 2575 Size: 6 1019 121 161 392 17 360 155 Cuts at: 2575 2852 3842 4250 6660 6844 344 Size: 277 990 408 2410 184 1401 Fragments arranged by size: 2410 1401 1019 990 408 392 360 277 184 161 155 121 17 6 MscI TGG'CCA Cuts at: 1753 2614 2855 4627 5662 1753 Size: 861 241 1772 1035 3992 Fragments arranged by size: 3992 1772 1035 861 241 MslI CAynn'nnrTG Cuts at: 1615 2631 3277 3412 4180 4621 4648 5890 6017 Size: 1016 646 135 768 441 27 1242 127 Cuts at: 6017 1615 Size: 3499 Fragments arranged by size: 3499 1242 1016 768 646 441 135 127 27 MspA1I CmG'CkG Cuts at: 193 791 1599 2714 3702 4587 5012 5326 5686 Size: 598 808 1115 988 885 425 314 360 Cuts at: 5686 6470 6715 193 Size: 784 245 1379 Fragments arranged by size: 1379 1115 988 885 808 784 598 425 360 314 245 NaeI GCC'GGC Cuts at: 3759 6082 3759 Size: 2323 5578 NarI GG'CG_CC Cuts at: 4663 5332 5580 4663 Size: 669 248 6984 Fragments arranged by size: 6984 669 248 NcoI C'CATG_G Cuts at: 107 1610 107 Size: 1503 6398 NgoMIV G'CCGG_C Cuts at: 3757 6080 3757 Size: 2323 5578 NsiI A_TGCA'T Cuts at: 4543 4543 Size: 7901 NspI r_CATG'y Cuts at: 3492 4954 5454 7057 3492 Size: 1462 500 1603 4336 Fragments arranged by size: 4336 1603 1462 500 PasI CC'CwG_GG Cuts at: 897 2206 897 Size: 1309 6592 PciI A'CATG_T Cuts at: 7053 7053 Size: 7901 PflMI CCAn_nnn'nTGG Cuts at: 238 829 2967 238 Size: 591 2138 5172 Fragments arranged by size: 5172 2138 591 PfoI T'CCnGG_A Cuts at: 231 231 Size: 7901 PmeI GTTT'AAAC Cuts at: 4900 4900 Size: 7901 PmlI CAC'GTG Cuts at: 926 4395 926 Size: 3469 4432 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 206 238 4150 4182 6347 6379 206 Size: 32 3912 32 2165 32 1728 Fragments arranged by size: 3912 2165 1728 32 32 32 PpuMI rG'GwC_Cy Cuts at: 235 3463 3602 4887 235 Size: 3228 139 1285 3249 Fragments arranged by size: 3249 3228 1285 139 PshAI GACnn'nnGTC Cuts at: 1298 1298 Size: 7901 PstI C_TGCA'G Cuts at: 3461 4263 4427 4948 5633 3461 Size: 802 164 521 685 5729 Fragments arranged by size: 5729 802 685 521 164 PvuI CG_AT'CG Cuts at: 104 104 Size: 7901 PvuII CAG'CTG Cuts at: 193 5326 5686 193 Size: 5133 360 2408 Fragments arranged by size: 5133 2408 360 RsrII CG'GwC_CG Cuts at: 6096 6096 Size: 7901 SacI G_AGCT'C Cuts at: 2764 3698 4915 2764 Size: 934 1217 5750 Fragments arranged by size: 5750 1217 934 SacII CC_GC'GG Cuts at: 1600 1600 Size: 7901 SalI G'TCGA_C Cuts at: 4938 4938 Size: 7901 SanDI GG'GwC_CC Cuts at: 3602 3602 Size: 7901 SapI GCTCTTCn'nnn_ Cuts at: 362 2552 2752 5924 6134 362 Size: 2190 200 3172 210 2129 Fragments arranged by size: 3172 2190 2129 210 200 SbfI CC_TGCA'GG Cuts at: 3461 4948 3461 Size: 1487 6414 ScaI AGT'ACT Cuts at: 7418 7418 Size: 7901 SfcI C'TryA_G Cuts at: 33 3457 4259 4423 4944 5629 6597 6788 33 Size: 3424 802 164 521 685 968 191 1146 Fragments arranged by size: 3424 1146 968 802 685 521 191 164 SfoI GGC'GCC Cuts at: 4664 5333 5581 4664 Size: 669 248 6984 Fragments arranged by size: 6984 669 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 7901 SgrAI Cr'CCGG_yG Cuts at: 712 712 Size: 7901 SmaI CCC'GGG Cuts at: 4657 4923 4657 Size: 266 7635 SmlI C'TyrA_G Cuts at: 126 868 1296 2122 2905 3858 5056 5971 6685 Size: 742 428 826 783 953 1198 915 714 Cuts at: 6685 6947 126 Size: 262 1080 Fragments arranged by size: 1198 1080 953 915 826 783 742 714 428 262 SpeI A'CTAG_T Cuts at: 67 67 Size: 7901 SphI G_CATG'C Cuts at: 4954 5454 4954 Size: 500 7401 StuI AGG'CCT Cuts at: 2358 3171 2358 Size: 813 7088 StyI C'CwwG_G Cuts at: 107 1046 1415 1610 3294 3480 3512 3597 3842 Size: 939 369 195 1684 186 32 85 245 Cuts at: 3842 5035 5389 107 Size: 1193 354 2619 Fragments arranged by size: 2619 1684 1193 939 369 354 245 195 186 85 32 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 336 1026 1623 2453 2616 4507 5484 5617 6076 Size: 690 597 830 163 1891 977 133 459 Cuts at: 6076 6285 336 Size: 209 1952 Fragments arranged by size: 1952 1891 977 830 690 597 459 209 163 133 TatI w'GTAC_w Cuts at: 3450 7416 3450 Size: 3966 3935 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 1633 1665 3374 3385 3406 3417 7418 7450 1633 Size: 32 1709 11 21 11 4001 32 2084 Fragments arranged by size: 4001 2084 1709 32 32 21 11 11 Tth111I GACn'n_nGTC Cuts at: 5698 5698 Size: 7901 XbaI T'CTAG_A Cuts at: 4932 4932 Size: 7901 XcmI CCAnnnn_n'nnnnTGG Cuts at: 1163 1383 4383 5396 1163 Size: 220 3000 1013 3668 Fragments arranged by size: 3668 3000 1013 220 XmaI C'CCGG_G Cuts at: 4655 4921 4655 Size: 266 7635 XmnI GAAnn'nnTTC Cuts at: 811 4300 811 Size: 3489 4412 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI AvrII BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssSI BstAPI BstBI BstXI BstYI BtgI BtgZI BtsI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NsiI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PstI PvuI PvuII RsrII SacI SacII SalI SanDI SapI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI XmnI Enzymes that do not cut: AatII AfeI AloI ApaI AscI BaeI BmtI BsiWI BsrGI BssHII BstEII BstZ17I Bsu36I ClaI DraIII EcoRV FseI FspAI MfeI NdeI NheI NotI NruI PacI PsiI PspOMI PspXI PsrI SexAI SfiI SnaBI SrfI SspI SwaI XhoI ZraI