FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0459, 398 aa
  1>>>pF1KA0459 398 - 398 aa - 398 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7903+/-0.000892; mu= 10.4654+/- 0.054
 mean_var=107.1652+/-20.739, 0's: 0 Z-trim(109.4): 21  B-trim: 0 in 0/50
 Lambda= 0.123893
 statistics sampled from 10869 (10883) to 10869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.334), width:  16
 Scan time:  3.030

The best scores are:                                      opt bits E(32554)
CCDS41279.1 OTUD3 gene_id:23252|Hs108|chr1         ( 398) 2641 482.6 2.7e-136


>>CCDS41279.1 OTUD3 gene_id:23252|Hs108|chr1              (398 aa)
 initn: 2641 init1: 2641 opt: 2641  Z-score: 2560.3  bits: 482.6 E(32554): 2.7e-136
Smith-Waterman score: 2641; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)

               10        20        30        40        50        60
pF1KA0 MSRKQAAKSRPGSGSRKAEAERKRDERAARRALAKERRNRPESGGGGGCEEEFVSFANQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSRKQAAKSRPGSGSRKAEAERKRDERAARRALAKERRNRPESGGGGGCEEEFVSFANQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 QALGLKLREVPGDGNCLFRALGDQLEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QALGLKLREVPGDGNCLFRALGDQLEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 EKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 EHYDSVRRINDNSEAPAHLQTDFQMLHQDESNKREKIKTKGMDSEDDLRDEVEDAVQKVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EHYDSVRRINDNSEAPAHLQTDFQMLHQDESNKREKIKTKGMDSEDDLRDEVEDAVQKVC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 NATGCSDFNLIVQNLEAENYNIESAIIAVLRMNQGKRNNAEENLEPSGRVLKQCGPLWEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NATGCSDFNLIVQNLEAENYNIESAIIAVLRMNQGKRNNAEENLEPSGRVLKQCGPLWEE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 GGSGARIFGNQGLNEGRTENNKAQASPSEENKANKNQLAKVTNKQRREQQWMEKKKRQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GGSGARIFGNQGLNEGRTENNKAQASPSEENKANKNQLAKVTNKQRREQQWMEKKKRQEE
              310       320       330       340       350       360

              370       380       390        
pF1KA0 RHRHKALESRGSHRDNNRSEAEANTQVTLVKTFAALNI
       ::::::::::::::::::::::::::::::::::::::
CCDS41 RHRHKALESRGSHRDNNRSEAEANTQVTLVKTFAALNI
              370       380       390        




398 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:00:00 2016 done: Wed Nov  2 19:00:01 2016
 Total Scan time:  3.030 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]