Result of FASTA (omim) for
pF1KA0459
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0459, 398 aa
1>>>pF1KA0459 398 - 398 aa - 398 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0574+/-0.000368; mu= 8.7979+/- 0.023
mean_var=117.0512+/-22.719, 0's: 0 Z-trim(116.4): 48 B-trim: 0 in 0/50
Lambda= 0.118546
statistics sampled from 27572 (27620) to 27572 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.324), width: 16
Scan time: 8.410
The best scores are: opt bits E(85289)
NP_056022 (OMIM: 611758) OTU domain-containing pro ( 398) 2641 462.7 7.1e-130
XP_005245849 (OMIM: 611758) PREDICTED: OTU domain- ( 465) 2554 447.8 2.4e-125
XP_005245850 (OMIM: 611758) PREDICTED: OTU domain- ( 384) 1852 327.7 2.9e-89
XP_005245851 (OMIM: 611758) PREDICTED: OTU domain- ( 245) 1555 276.8 3.8e-74
XP_005263136 (OMIM: 611744) PREDICTED: OTU domain- (1114) 247 53.5 3e-06
XP_011530343 (OMIM: 611744) PREDICTED: OTU domain- (1120) 221 49.0 6.6e-05
XP_011530342 (OMIM: 611744) PREDICTED: OTU domain- (1121) 221 49.0 6.6e-05
NP_001311222 (OMIM: 300776,300884) putative bifunc ( 896) 200 45.4 0.00066
XP_016885339 (OMIM: 300776,300884) PREDICTED: puta ( 925) 200 45.4 0.00067
XP_016885338 (OMIM: 300776,300884) PREDICTED: puta ( 939) 200 45.4 0.00068
NP_001244166 (OMIM: 300776,300884) putative bifunc ( 954) 200 45.4 0.00069
NP_001244159 (OMIM: 300776,300884) putative bifunc ( 954) 200 45.4 0.00069
NP_001244163 (OMIM: 300776,300884) putative bifunc ( 954) 200 45.4 0.00069
XP_011529336 (OMIM: 300776,300884) PREDICTED: puta ( 958) 200 45.4 0.00069
XP_016885337 (OMIM: 300776,300884) PREDICTED: puta (1050) 200 45.4 0.00075
XP_011529334 (OMIM: 300776,300884) PREDICTED: puta (1057) 200 45.4 0.00075
XP_006724760 (OMIM: 300776,300884) PREDICTED: puta (1057) 200 45.4 0.00075
XP_006724761 (OMIM: 300776,300884) PREDICTED: puta (1057) 200 45.4 0.00075
XP_011529333 (OMIM: 300776,300884) PREDICTED: puta (1057) 200 45.4 0.00075
XP_011529335 (OMIM: 300776,300884) PREDICTED: puta (1057) 200 45.4 0.00075
NP_001311221 (OMIM: 300776,300884) putative bifunc (1058) 200 45.4 0.00075
NP_001244160 (OMIM: 300776,300884) putative bifunc (1059) 200 45.4 0.00075
XP_011529332 (OMIM: 300776,300884) PREDICTED: puta (1082) 200 45.4 0.00077
XP_006724756 (OMIM: 300776,300884) PREDICTED: puta (1124) 200 45.5 0.00079
NP_001093392 (OMIM: 300776,300884) putative bifunc (1137) 200 45.5 0.0008
XP_016885336 (OMIM: 300776,300884) PREDICTED: puta (1148) 200 45.5 0.00081
XP_016885335 (OMIM: 300776,300884) PREDICTED: puta (1153) 200 45.5 0.00081
XP_011529330 (OMIM: 300776,300884) PREDICTED: puta (1161) 200 45.5 0.00081
NP_001129629 (OMIM: 300713) OTU domain-containing ( 566) 191 43.8 0.0013
NP_001129630 (OMIM: 300713) OTU domain-containing ( 566) 191 43.8 0.0013
XP_016885117 (OMIM: 300713) PREDICTED: OTU domain- ( 567) 191 43.8 0.0013
XP_005272679 (OMIM: 300713) PREDICTED: OTU domain- ( 567) 191 43.8 0.0013
NP_001129631 (OMIM: 300713) OTU domain-containing ( 349) 179 41.6 0.0036
XP_006724600 (OMIM: 300713) PREDICTED: OTU domain- ( 571) 181 42.0 0.0043
NP_060072 (OMIM: 300713) OTU domain-containing pro ( 571) 181 42.0 0.0043
XP_005278096 (OMIM: 300713) PREDICTED: OTU domain- ( 572) 181 42.0 0.0043
XP_011542234 (OMIM: 300713) PREDICTED: OTU domain- ( 572) 181 42.0 0.0043
NP_001138845 (OMIM: 612022) OTU domain-containing ( 481) 179 41.7 0.0047
NP_057107 (OMIM: 612021) OTU domain-containing pro ( 323) 172 40.4 0.0077
>>NP_056022 (OMIM: 611758) OTU domain-containing protein (398 aa)
initn: 2641 init1: 2641 opt: 2641 Z-score: 2452.7 bits: 462.7 E(85289): 7.1e-130
Smith-Waterman score: 2641; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)
10 20 30 40 50 60
pF1KA0 MSRKQAAKSRPGSGSRKAEAERKRDERAARRALAKERRNRPESGGGGGCEEEFVSFANQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MSRKQAAKSRPGSGSRKAEAERKRDERAARRALAKERRNRPESGGGGGCEEEFVSFANQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QALGLKLREVPGDGNCLFRALGDQLEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QALGLKLREVPGDGNCLFRALGDQLEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 EKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 EHYDSVRRINDNSEAPAHLQTDFQMLHQDESNKREKIKTKGMDSEDDLRDEVEDAVQKVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EHYDSVRRINDNSEAPAHLQTDFQMLHQDESNKREKIKTKGMDSEDDLRDEVEDAVQKVC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 NATGCSDFNLIVQNLEAENYNIESAIIAVLRMNQGKRNNAEENLEPSGRVLKQCGPLWEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NATGCSDFNLIVQNLEAENYNIESAIIAVLRMNQGKRNNAEENLEPSGRVLKQCGPLWEE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 GGSGARIFGNQGLNEGRTENNKAQASPSEENKANKNQLAKVTNKQRREQQWMEKKKRQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GGSGARIFGNQGLNEGRTENNKAQASPSEENKANKNQLAKVTNKQRREQQWMEKKKRQEE
310 320 330 340 350 360
370 380 390
pF1KA0 RHRHKALESRGSHRDNNRSEAEANTQVTLVKTFAALNI
::::::::::::::::::::::::::::::::::::::
NP_056 RHRHKALESRGSHRDNNRSEAEANTQVTLVKTFAALNI
370 380 390
>>XP_005245849 (OMIM: 611758) PREDICTED: OTU domain-cont (465 aa)
initn: 1591 init1: 1591 opt: 2554 Z-score: 2371.3 bits: 447.8 E(85289): 2.4e-125
Smith-Waterman score: 2554; 98.0% identity (98.0% similar) in 398 aa overlap (1-398:76-465)
10 20 30
pF1KA0 MSRKQAAKSRPGSGSRKAEAERKRDERAAR
::::::::::::::::::::::::::::::
XP_005 PRCFTFPTLEADAGGSCAFPSCRWGLQAKAMSRKQAAKSRPGSGSRKAEAERKRDERAAR
50 60 70 80 90 100
40 50 60 70 80 90
pF1KA0 RALAKERRNRPESGGGGGCEEEFVSFANQLQALGLKLREVPGDGNCLFRALGDQLEGHSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RALAKERRNRPESGGGGGCEEEFVSFANQLQALGLKLREVPGDGNCLFRALGDQLEGHSR
110 120 130 140 150 160
100 110 120 130 140 150
pF1KA0 NHLKHRQETVDYMIKQREDFEPFVEDDIPFEKHVASLAKPGTFAGNDAIVAFARNHQLNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NHLKHRQETVDYMIKQREDFEPFVEDDIPFEKHVASLAKPGTFAGNDAIVAFARNHQLNV
170 180 190 200 210 220
160 170 180 190 200 210
pF1KA0 VIHQLNAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSEAPAHLQTDFQMLHQDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VIHQLNAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSEAPAHLQTDFQMLHQDE
230 240 250 260 270 280
220 230 240 250 260 270
pF1KA0 SNKREKIKTKGMDSEDDLRDEVEDAVQKVCNATGCSDFNLIVQNLEAENYNIESAIIAVL
:::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_005 SNKREKIKTKGMDSEDDLRDEVEDAVQK--------DFNLIVQNLEAENYNIESAIIAVL
290 300 310 320 330
280 290 300 310 320 330
pF1KA0 RMNQGKRNNAEENLEPSGRVLKQCGPLWEEGGSGARIFGNQGLNEGRTENNKAQASPSEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RMNQGKRNNAEENLEPSGRVLKQCGPLWEEGGSGARIFGNQGLNEGRTENNKAQASPSEE
340 350 360 370 380 390
340 350 360 370 380 390
pF1KA0 NKANKNQLAKVTNKQRREQQWMEKKKRQEERHRHKALESRGSHRDNNRSEAEANTQVTLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NKANKNQLAKVTNKQRREQQWMEKKKRQEERHRHKALESRGSHRDNNRSEAEANTQVTLV
400 410 420 430 440 450
pF1KA0 KTFAALNI
::::::::
XP_005 KTFAALNI
460
>>XP_005245850 (OMIM: 611758) PREDICTED: OTU domain-cont (384 aa)
initn: 1877 init1: 1852 opt: 1852 Z-score: 1723.6 bits: 327.7 E(85289): 2.9e-89
Smith-Waterman score: 1852; 98.6% identity (99.6% similar) in 282 aa overlap (1-282:76-357)
10 20 30
pF1KA0 MSRKQAAKSRPGSGSRKAEAERKRDERAAR
::::::::::::::::::::::::::::::
XP_005 PRCFTFPTLEADAGGSCAFPSCRWGLQAKAMSRKQAAKSRPGSGSRKAEAERKRDERAAR
50 60 70 80 90 100
40 50 60 70 80 90
pF1KA0 RALAKERRNRPESGGGGGCEEEFVSFANQLQALGLKLREVPGDGNCLFRALGDQLEGHSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RALAKERRNRPESGGGGGCEEEFVSFANQLQALGLKLREVPGDGNCLFRALGDQLEGHSR
110 120 130 140 150 160
100 110 120 130 140 150
pF1KA0 NHLKHRQETVDYMIKQREDFEPFVEDDIPFEKHVASLAKPGTFAGNDAIVAFARNHQLNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NHLKHRQETVDYMIKQREDFEPFVEDDIPFEKHVASLAKPGTFAGNDAIVAFARNHQLNV
170 180 190 200 210 220
160 170 180 190 200 210
pF1KA0 VIHQLNAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSEAPAHLQTDFQMLHQDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VIHQLNAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSEAPAHLQTDFQMLHQDE
230 240 250 260 270 280
220 230 240 250 260 270
pF1KA0 SNKREKIKTKGMDSEDDLRDEVEDAVQKVCNATGCSDFNLIVQNLEAENYNIESAIIAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SNKREKIKTKGMDSEDDLRDEVEDAVQKVCNATGCSDFNLIVQNLEAENYNIESAIIAVL
290 300 310 320 330 340
280 290 300 310 320 330
pF1KA0 RMNQGKRNNAEENLEPSGRVLKQCGPLWEEGGSGARIFGNQGLNEGRTENNKAQASPSEE
::::::::. ..
XP_005 RMNQGKRNSHKQTEARTAVDGEEEAAGGEAPPQSPGEQR
350 360 370 380
>>XP_005245851 (OMIM: 611758) PREDICTED: OTU domain-cont (245 aa)
initn: 1555 init1: 1555 opt: 1555 Z-score: 1452.1 bits: 276.8 E(85289): 3.8e-74
Smith-Waterman score: 1555; 100.0% identity (100.0% similar) in 237 aa overlap (162-398:9-245)
140 150 160 170 180 190
pF1KA0 TFAGNDAIVAFARNHQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRIND
::::::::::::::::::::::::::::::
XP_005 MTFLLRSMIRGTEKSSVRELHIAYRYGEHYDSVRRIND
10 20 30
200 210 220 230 240 250
pF1KA0 NSEAPAHLQTDFQMLHQDESNKREKIKTKGMDSEDDLRDEVEDAVQKVCNATGCSDFNLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NSEAPAHLQTDFQMLHQDESNKREKIKTKGMDSEDDLRDEVEDAVQKVCNATGCSDFNLI
40 50 60 70 80 90
260 270 280 290 300 310
pF1KA0 VQNLEAENYNIESAIIAVLRMNQGKRNNAEENLEPSGRVLKQCGPLWEEGGSGARIFGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VQNLEAENYNIESAIIAVLRMNQGKRNNAEENLEPSGRVLKQCGPLWEEGGSGARIFGNQ
100 110 120 130 140 150
320 330 340 350 360 370
pF1KA0 GLNEGRTENNKAQASPSEENKANKNQLAKVTNKQRREQQWMEKKKRQEERHRHKALESRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLNEGRTENNKAQASPSEENKANKNQLAKVTNKQRREQQWMEKKKRQEERHRHKALESRG
160 170 180 190 200 210
380 390
pF1KA0 SHRDNNRSEAEANTQVTLVKTFAALNI
:::::::::::::::::::::::::::
XP_005 SHRDNNRSEAEANTQVTLVKTFAALNI
220 230 240
>>XP_005263136 (OMIM: 611744) PREDICTED: OTU domain-cont (1114 aa)
initn: 195 init1: 165 opt: 247 Z-score: 233.2 bits: 53.5 E(85289): 3e-06
Smith-Waterman score: 247; 28.6% identity (60.5% similar) in 220 aa overlap (41-249:8-221)
20 30 40 50 60
pF1KA0 PGSGSRKAEAERKRDERAARRALAKERRNRPESG--GGGGCEEEFVSFANQLQALGLKLR
:..: ::.: .:. . . :. ::: .
XP_005 MEAAVGVPDGGDQGGAGPREDATPMDAYLRKLGLYRK
10 20 30
70 80 90 100 110 120
pF1KA0 EVPGDGNCLFRALGDQ-LEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPFEKHVASL
: ::.:::::...: :...:: :.. :. . :. ..:: :: :.: . ::... :
XP_005 LVAKDGSCLFRAVAEQVLHSQSR-HVEVRMACIHYLRENREKFEAFIEGS--FEEYLKRL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KA0 AKPGTFAGNDAIVAFARNHQLNVVIHQL-NAPLWQIRGTEKSSVRELHIAYRYGEHYDSV
.: ..:. : :.. .. . .:.. :. :. ::.. ... . . :.::: :
XP_005 ENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQV--TENNFPEKVLLCFSNGNHYDIV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KA0 RRINDNSEAPAHLQTDFQMLHQDESNKRE--KI--KTKGMDSEDDLRDEVEDAVQKVCN-
:. .:. : :. . : .. : . :: . .. :. .:. :. . :.
XP_005 YPIK-YKESSAMCQSLLYELLYEKVFKTDVSKIVMELDTLEVADEDNSEISDSEDDSCKS
160 170 180 190 200 210
250 260 270 280 290
pF1KA0 --ATGCSDFNLIVQNLEAENYNIESAIIAVLRMNQGKRNNAEENLEPSGRVLKQCGPLWE
:.. .: :
XP_005 KTAAAAADVNGFKPLSGNEQLKNNGNSTSLPLSRKVLKSLNPAVYRNVEYEIWLKSKQAQ
220 230 240 250 260 270
>>XP_011530343 (OMIM: 611744) PREDICTED: OTU domain-cont (1120 aa)
initn: 178 init1: 148 opt: 221 Z-score: 209.1 bits: 49.0 E(85289): 6.6e-05
Smith-Waterman score: 223; 27.8% identity (58.6% similar) in 227 aa overlap (41-249:8-228)
20 30 40 50 60
pF1KA0 PGSGSRKAEAERKRDERAARRALAKERRNRPESG--GGGGCEEEFVSFANQLQALGLKLR
:..: ::.: .:. . . :. ::: .
XP_011 MEAAVGVPDGGDQGGAGPREDATPMDAYLRKLGLYRK
10 20 30
70 80 90 100 110 120
pF1KA0 EVPGDGNCLFRALGDQ-LEGHSRNHLKHRQETVDYMIKQREDFEP-------FVEDDIPF
: ::.:::::...: :...:: :.. :. . :. ..:: :: :.: . :
XP_011 LVAKDGSCLFRAVAEQVLHSQSR-HVEVRMACIHYLRENREKFEAVTCNFKHFIEGS--F
40 50 60 70 80 90
130 140 150 160 170
pF1KA0 EKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQL-NAPLWQIRGTEKSSVRELHIAYRY
:... : .: ..:. : :.. .. . .:.. :. :. ::.. ... . .
XP_011 EEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQV--TENNFPEKVLLCFSN
100 110 120 130 140 150
180 190 200 210 220 230
pF1KA0 GEHYDSVRRINDNSEAPAHLQTDFQMLHQDESNKRE--KI--KTKGMDSEDDLRDEVEDA
:.::: : :. .:. : :. . : .. : . :: . .. :. .:. :.
XP_011 GNHYDIVYPIK-YKESSAMCQSLLYELLYEKVFKTDVSKIVMELDTLEVADEDNSEISDS
160 170 180 190 200 210
240 250 260 270 280 290
pF1KA0 VQKVCN---ATGCSDFNLIVQNLEAENYNIESAIIAVLRMNQGKRNNAEENLEPSGRVLK
. :. :.. .: :
XP_011 EDDSCKSKTAAAAADVNGFKPLSGNELKNNGNSTSLPLSRKVLKSLNPAVYRNVEYEIWL
220 230 240 250 260 270
>>XP_011530342 (OMIM: 611744) PREDICTED: OTU domain-cont (1121 aa)
initn: 178 init1: 148 opt: 221 Z-score: 209.1 bits: 49.0 E(85289): 6.6e-05
Smith-Waterman score: 223; 27.8% identity (58.6% similar) in 227 aa overlap (41-249:8-228)
20 30 40 50 60
pF1KA0 PGSGSRKAEAERKRDERAARRALAKERRNRPESG--GGGGCEEEFVSFANQLQALGLKLR
:..: ::.: .:. . . :. ::: .
XP_011 MEAAVGVPDGGDQGGAGPREDATPMDAYLRKLGLYRK
10 20 30
70 80 90 100 110 120
pF1KA0 EVPGDGNCLFRALGDQ-LEGHSRNHLKHRQETVDYMIKQREDFEP-------FVEDDIPF
: ::.:::::...: :...:: :.. :. . :. ..:: :: :.: . :
XP_011 LVAKDGSCLFRAVAEQVLHSQSR-HVEVRMACIHYLRENREKFEAVTCNFKHFIEGS--F
40 50 60 70 80 90
130 140 150 160 170
pF1KA0 EKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQL-NAPLWQIRGTEKSSVRELHIAYRY
:... : .: ..:. : :.. .. . .:.. :. :. ::.. ... . .
XP_011 EEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQV--TENNFPEKVLLCFSN
100 110 120 130 140 150
180 190 200 210 220 230
pF1KA0 GEHYDSVRRINDNSEAPAHLQTDFQMLHQDESNKRE--KI--KTKGMDSEDDLRDEVEDA
:.::: : :. .:. : :. . : .. : . :: . .. :. .:. :.
XP_011 GNHYDIVYPIK-YKESSAMCQSLLYELLYEKVFKTDVSKIVMELDTLEVADEDNSEISDS
160 170 180 190 200 210
240 250 260 270 280 290
pF1KA0 VQKVCN---ATGCSDFNLIVQNLEAENYNIESAIIAVLRMNQGKRNNAEENLEPSGRVLK
. :. :.. .: :
XP_011 EDDSCKSKTAAAAADVNGFKPLSGNEQLKNNGNSTSLPLSRKVLKSLNPAVYRNVEYEIW
220 230 240 250 260 270
>>NP_001311222 (OMIM: 300776,300884) putative bifunction (896 aa)
initn: 134 init1: 134 opt: 200 Z-score: 191.2 bits: 45.4 E(85289): 0.00066
Smith-Waterman score: 200; 28.2% identity (62.2% similar) in 156 aa overlap (55-209:117-268)
30 40 50 60 70 80
pF1KA0 DERAARRALAKERRNRPESGGGGGCEEEFVSFANQLQALGLKLREVPGDGNCLFRALGDQ
:. . : .::: . . :..:::::...:
NP_001 AFFPLPLTPTLYKMHKGWKNYCSQKSLNEASMDEYLGSLGLFRKLTAKDASCLFRAISEQ
90 100 110 120 130 140
90 100 110 120 130 140
pF1KA0 LEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPFEKHVASLAKPGTFAGNDAIVAFAR
: . .::. :. :.:: .... :: .:: . :::.. :. : ::. : :..
NP_001 LFCSQVHHLEIRKACVSYMRENQQTFESYVEGS--FEKYLERLGDPKESAGQLEIRALSL
150 160 170 180 190 200
150 160 170 180 190 200
pF1KA0 NHQLNVVIHQL-NAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSEAPAHLQTDF
.. . ..... . : . :... .. . : . ::::: . .: : . . .
NP_001 IYNRDFILYRFPGKPPTYV--TDNGYEDKILLCYSSSGHYDSVYSKQFQSSAAVCQAVLY
210 220 230 240 250 260
210 220 230 240 250 260
pF1KA0 QMLHQDESNKREKIKTKGMDSEDDLRDEVEDAVQKVCNATGCSDFNLIVQNLEAENYNIE
..:..:
NP_001 EILYKDVFVVDEEELKTAIKLFRSGSKKNRNNAVTGSEDAHTDYKSSNQNRMEEWGACYN
270 280 290 300 310 320
>>XP_016885339 (OMIM: 300776,300884) PREDICTED: putative (925 aa)
initn: 134 init1: 134 opt: 200 Z-score: 191.0 bits: 45.4 E(85289): 0.00067
Smith-Waterman score: 200; 28.2% identity (62.2% similar) in 156 aa overlap (55-209:221-372)
30 40 50 60 70 80
pF1KA0 DERAARRALAKERRNRPESGGGGGCEEEFVSFANQLQALGLKLREVPGDGNCLFRALGDQ
:. . : .::: . . :..:::::...:
XP_016 AFFPLPLTPTLYKMHKGWKNYCSQKSLNEASMDEYLGSLGLFRKLTAKDASCLFRAISEQ
200 210 220 230 240 250
90 100 110 120 130 140
pF1KA0 LEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPFEKHVASLAKPGTFAGNDAIVAFAR
: . .::. :. :.:: .... :: .:: . :::.. :. : ::. : :..
XP_016 LFCSQVHHLEIRKACVSYMRENQQTFESYVEGS--FEKYLERLGDPKESAGQLEIRALSL
260 270 280 290 300
150 160 170 180 190 200
pF1KA0 NHQLNVVIHQL-NAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSEAPAHLQTDF
.. . ..... . : . :... .. . : . ::::: . .: : . . .
XP_016 IYNRDFILYRFPGKPPTYV--TDNGYEDKILLCYSSSGHYDSVYSKQFQSSAAVCQAVLY
310 320 330 340 350 360
210 220 230 240 250 260
pF1KA0 QMLHQDESNKREKIKTKGMDSEDDLRDEVEDAVQKVCNATGCSDFNLIVQNLEAENYNIE
..:..:
XP_016 EILYKDVFVVDEEELKTAIKLFRSGSKKNRNNAVTGSEDAHTDYKSSNQNRMEEWGACYN
370 380 390 400 410 420
>>XP_016885338 (OMIM: 300776,300884) PREDICTED: putative (939 aa)
initn: 134 init1: 134 opt: 200 Z-score: 190.9 bits: 45.4 E(85289): 0.00068
Smith-Waterman score: 200; 28.2% identity (62.2% similar) in 156 aa overlap (55-209:221-372)
30 40 50 60 70 80
pF1KA0 DERAARRALAKERRNRPESGGGGGCEEEFVSFANQLQALGLKLREVPGDGNCLFRALGDQ
:. . : .::: . . :..:::::...:
XP_016 AFFPLPLTPTLYKMHKGWKNYCSQKSLNEASMDEYLGSLGLFRKLTAKDASCLFRAISEQ
200 210 220 230 240 250
90 100 110 120 130 140
pF1KA0 LEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPFEKHVASLAKPGTFAGNDAIVAFAR
: . .::. :. :.:: .... :: .:: . :::.. :. : ::. : :..
XP_016 LFCSQVHHLEIRKACVSYMRENQQTFESYVEGS--FEKYLERLGDPKESAGQLEIRALSL
260 270 280 290 300
150 160 170 180 190 200
pF1KA0 NHQLNVVIHQL-NAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSEAPAHLQTDF
.. . ..... . : . :... .. . : . ::::: . .: : . . .
XP_016 IYNRDFILYRFPGKPPTYV--TDNGYEDKILLCYSSSGHYDSVYSKQFQSSAAVCQAVLY
310 320 330 340 350 360
210 220 230 240 250 260
pF1KA0 QMLHQDESNKREKIKTKGMDSEDDLRDEVEDAVQKVCNATGCSDFNLIVQNLEAENYNIE
..:..:
XP_016 EILYKDVFVVDEEELKTAIKLFRSGSKKNRNNAVTGSEDAHTDYKSSNQNRMEEWGACYN
370 380 390 400 410 420
398 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:00:01 2016 done: Wed Nov 2 19:00:02 2016
Total Scan time: 8.410 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]