FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0464, 324 aa
  1>>>pF1KA0464 324 - 324 aa - 324 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4526+/-0.000809; mu= 6.0722+/- 0.049
 mean_var=108.9766+/-21.483, 0's: 0 Z-trim(110.8): 27  B-trim: 0 in 0/50
 Lambda= 0.122859
 statistics sampled from 11844 (11869) to 11844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.365), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS53421.1 NOS1AP gene_id:9722|Hs108|chr1         ( 501) 2036 371.2 9.7e-103
CCDS1237.1 NOS1AP gene_id:9722|Hs108|chr1          ( 506) 2016 367.6 1.1e-101


>>CCDS53421.1 NOS1AP gene_id:9722|Hs108|chr1              (501 aa)
 initn: 2206 init1: 2036 opt: 2036  Z-score: 1958.0  bits: 371.2 E(32554): 9.7e-103
Smith-Waterman score: 2036; 99.7% identity (99.7% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KA0 MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 EFKAKNIKKKKVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFYVSHDSQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EFKAKNIKKKKVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFYVSHDSQD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNADGQED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNADGQED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 GESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDLDAVGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDLDAVGK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 EGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQLLQQQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQLLQQQQQ
              250       260       270       280       290       300

              310       320                                        
pF1KA0 QTQVAVAQVLLSLLPTSQAPLSWA                                    
       ::::::::: :                                                 
CCDS53 QTQVAVAQVHLLKDQLAAEAAARLEAQARVHQLLLQNKDMLQHISLLVKQVQELELKLSG
              310       320       330       340       350       360

>>CCDS1237.1 NOS1AP gene_id:9722|Hs108|chr1               (506 aa)
 initn: 2133 init1: 1448 opt: 2016  Z-score: 1938.8  bits: 367.6 E(32554): 1.1e-101
Smith-Waterman score: 2016; 98.1% identity (98.1% similar) in 316 aa overlap (1-311:1-316)

               10        20        30        40        50        60
pF1KA0 MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRY
               10        20        30        40        50        60

               70        80        90            100       110     
pF1KA0 EFKAKNIKKKKVSIMVSVDGVKVILKKKKK-----KKEWTWDESKMLVMQDPIYRIFYVS
       ::::::::::::::::::::::::::::::     :::::::::::::::::::::::::
CCDS12 EFKAKNIKKKKVSIMVSVDGVKVILKKKKKLLLLQKKEWTWDESKMLVMQDPIYRIFYVS
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KA0 HDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNA
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KA0 DGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDL
              190       200       210       220       230       240

         240       250       260       270       280       290     
pF1KA0 DAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQLL
              250       260       270       280       290       300

         300       310       320                                   
pF1KA0 QQQQQQTQVAVAQVLLSLLPTSQAPLSWA                               
       :::::::::::::: :                                            
CCDS12 QQQQQQTQVAVAQVHLLKDQLAAEAAARLEAQARVHQLLLQNKDMLQHISLLVKQVQELE
              310       320       330       340       350       360




324 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:00:36 2016 done: Wed Nov  2 19:00:36 2016
 Total Scan time:  2.210 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]