Result of FASTA (ccds) for
pF1KA0471
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0471, 370 aa
1>>>pF1KA0471 370 - 370 aa - 370 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.8638+/-0.00109; mu= -3.8752+/- 0.065
mean_var=296.6939+/-61.284, 0's: 0 Z-trim(112.0): 39 B-trim: 98 in 1/50
Lambda= 0.074459
statistics sampled from 12811 (12834) to 12811 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.394), width: 16
Scan time: 2.450
The best scores are: opt bits E(32554)
CCDS58046.1 RABGAP1L gene_id:9910|Hs108|chr1 ( 370) 2372 268.2 8.2e-72
CCDS81407.1 RABGAP1L gene_id:9910|Hs108|chr1 ( 308) 1708 196.8 2.1e-50
CCDS55662.1 RABGAP1L gene_id:9910|Hs108|chr1 ( 253) 1504 174.8 7.3e-44
CCDS6848.2 RABGAP1 gene_id:23637|Hs108|chr9 (1069) 1384 162.5 1.6e-39
CCDS1314.1 RABGAP1L gene_id:9910|Hs108|chr1 ( 815) 495 66.9 7.3e-11
>>CCDS58046.1 RABGAP1L gene_id:9910|Hs108|chr1 (370 aa)
initn: 2372 init1: 2372 opt: 2372 Z-score: 1402.7 bits: 268.2 E(32554): 8.2e-72
Smith-Waterman score: 2372; 100.0% identity (100.0% similar) in 370 aa overlap (1-370:1-370)
10 20 30 40 50 60
pF1KA0 MEEGVPCPAPAAKLTPPVKKSQDMHDERSKLVNEYACRVLELLGMGHRLFVPRLLATSKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MEEGVPCPAPAAKLTPPVKKSQDMHDERSKLVNEYACRVLELLGMGHRLFVPRLLATSKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 DLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 QQEDPMDRYKRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QQEDPMDRYKRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 LTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 KQQAASKEELEVVKGKMMACKHCSDIFSKEGALKLAATGREDQGIETDDEKDSLKKQLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KQQAASKEELEVVKGKMMACKHCSDIFSKEGALKLAATGREDQGIETDDEKDSLKKQLRE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 MELELAQTKLQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MELELAQTKLQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPA
310 320 330 340 350 360
370
pF1KA0 PVTQPPKEST
::::::::::
CCDS58 PVTQPPKEST
370
>>CCDS81407.1 RABGAP1L gene_id:9910|Hs108|chr1 (308 aa)
initn: 1708 init1: 1708 opt: 1708 Z-score: 1018.3 bits: 196.8 E(32554): 2.1e-50
Smith-Waterman score: 1708; 100.0% identity (100.0% similar) in 271 aa overlap (100-370:38-308)
70 80 90 100 110 120
pF1KA0 ALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRY
::::::::::::::::::::::::::::::
CCDS81 MVAYDAHVFSQLHDEDFLTSLVAISKPRSMVPTKKLKKYEKEYQTMRESQLQQEDPMDRY
10 20 30 40 50 60
130 140 150 160 170 180
pF1KA0 KRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVET
70 80 90 100 110 120
190 200 210 220 230 240
pF1KA0 EEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEE
130 140 150 160 170 180
250 260 270 280 290 300
pF1KA0 LEVVKGKMMACKHCSDIFSKEGALKLAATGREDQGIETDDEKDSLKKQLREMELELAQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LEVVKGKMMACKHCSDIFSKEGALKLAATGREDQGIETDDEKDSLKKQLREMELELAQTK
190 200 210 220 230 240
310 320 330 340 350 360
pF1KA0 LQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPAPVTQPPKES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPAPVTQPPKES
250 260 270 280 290 300
370
pF1KA0 T
:
CCDS81 T
>>CCDS55662.1 RABGAP1L gene_id:9910|Hs108|chr1 (253 aa)
initn: 1503 init1: 1503 opt: 1504 Z-score: 901.0 bits: 174.8 E(32554): 7.3e-44
Smith-Waterman score: 1504; 98.4% identity (98.8% similar) in 245 aa overlap (126-370:9-253)
100 110 120 130 140 150
pF1KA0 CNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKRENRRLQEASMRLEQENDDLAHELV
: .:::::::::::::::::::::::::
CCDS55 MIENSSWSMTFEERENRRLQEASMRLEQENDDLAHELV
10 20 30
160 170 180 190 200 210
pF1KA0 TSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAE
40 50 60 70 80 90
220 230 240 250 260 270
pF1KA0 YEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHCSDIFSKEGALKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHCSDIFSKEGALKL
100 110 120 130 140 150
280 290 300 310 320 330
pF1KA0 AATGREDQGIETDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELEHQRGALMNEIQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AATGREDQGIETDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELEHQRGALMNEIQA
160 170 180 190 200 210
340 350 360 370
pF1KA0 AKNSWFSKTLNSIKTATGTQPLQPAPVTQPPKEST
:::::::::::::::::::::::::::::::::::
CCDS55 AKNSWFSKTLNSIKTATGTQPLQPAPVTQPPKEST
220 230 240 250
>>CCDS6848.2 RABGAP1 gene_id:23637|Hs108|chr9 (1069 aa)
initn: 1448 init1: 1384 opt: 1384 Z-score: 823.1 bits: 162.5 E(32554): 1.6e-39
Smith-Waterman score: 1384; 69.5% identity (91.1% similar) in 302 aa overlap (54-355:763-1064)
30 40 50 60 70 80
pF1KA0 MHDERSKLVNEYACRVLELLGMGHRLFVPRLLATSKEDLLQADFEGALKFFRVQLPKRYR
:: :::.::: .::::::::::::::::::
CCDS68 TAKFPLYMVFHIIDLLLCEGISVIFNVALGLLKTSKDDLLLTDFEGALKFFRVQLPKRYR
740 750 760 770 780 790
90 100 110 120 130 140
pF1KA0 AEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKRENRRLQEASMRL
.::::..::: :::.:. ::::::::::.::::.: :::::..:..:::::::::.:::
CCDS68 SEENAKKLMELACNMKISQKKLKKYEKEYHTMREQQAQQEDPIERFERENRRLQEANMRL
800 810 820 830 840 850
150 160 170 180 190 200
pF1KA0 EQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQL
:::::::::::::::::::.:::.::.:::.::::::.:::.:...:::::. :::.:::
CCDS68 EQENDDLAHELVTSKIALRKDLDNAEEKADALNKELLMTKQKLIDAEEEKRRLEEESAQL
860 870 880 890 900 910
210 220 230 240 250 260
pF1KA0 KEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHC
::. :..:.::: ::::...::..::::::::: ::::::.:.: :.: .. :. :..:
CCDS68 KEMCRRELDKAESEIKKNSSIIGDYKQICSQLSERLEKQQTANKVEIEKIRQKVDDCERC
920 930 940 950 960 970
270 280 290 300 310 320
pF1KA0 SDIFSKEGALKLAATGREDQGIETDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELE
..:.::: .: .. .: .::.::..::.:::::::::::::::::::.::::.::
CCDS68 REFFNKEGRVKGISSTKEVLDEDTDEEKETLKNQLREMELELAQTKLQLVEAECKIQDLE
980 990 1000 1010 1020 1030
330 340 350 360 370
pF1KA0 HQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPAPVTQPPKEST
:. : .::.::::..::..::.:::::::.:
CCDS68 HHLGLALNEVQAAKKTWFNRTLSSIKTATGVQGKETC
1040 1050 1060
>>CCDS1314.1 RABGAP1L gene_id:9910|Hs108|chr1 (815 aa)
initn: 495 init1: 495 opt: 495 Z-score: 308.5 bits: 66.9 E(32554): 7.3e-11
Smith-Waterman score: 495; 98.7% identity (98.7% similar) in 77 aa overlap (54-130:735-811)
30 40 50 60 70 80
pF1KA0 MHDERSKLVNEYACRVLELLGMGHRLFVPRLLATSKEDLLQADFEGALKFFRVQLPKRYR
:: :::::::::::::::::::::::::::
CCDS13 TAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYR
710 720 730 740 750 760
90 100 110 120 130 140
pF1KA0 AEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKRENRRLQEASMRL
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKFVYL
770 780 790 800 810
150 160 170 180 190 200
pF1KA0 EQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQL
370 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:01:57 2016 done: Wed Nov 2 19:01:58 2016
Total Scan time: 2.450 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]