Result of FASTA (ccds) for
pF1KA0487
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0487, 180 aa
1>>>pF1KA0487 180 - 180 aa - 180 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9861+/-0.000608; mu= 14.9219+/- 0.037
mean_var=64.0016+/-12.751, 0's: 0 Z-trim(111.4): 16 B-trim: 0 in 0/55
Lambda= 0.160317
statistics sampled from 12330 (12345) to 12330 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.379), width: 16
Scan time: 2.090
The best scores are: opt bits E(32554)
CCDS44952.1 NUDT4 gene_id:11163|Hs108|chr12 ( 180) 1217 289.3 8.9e-79
CCDS9044.1 NUDT4 gene_id:11163|Hs108|chr12 ( 181) 1205 286.5 6.1e-78
CCDS43952.1 NUDT11 gene_id:55190|Hs108|chrX ( 164) 1005 240.2 4.8e-64
CCDS35278.1 NUDT10 gene_id:170685|Hs108|chrX ( 164) 995 237.9 2.4e-63
CCDS76584.1 NUDT4 gene_id:11163|Hs108|chr12 ( 128) 850 204.3 2.4e-53
CCDS4791.1 NUDT3 gene_id:11165|Hs108|chr6 ( 172) 845 203.2 6.8e-53
CCDS73504.1 NUDT4 gene_id:11163|Hs108|chr12 ( 129) 838 201.5 1.7e-52
>>CCDS44952.1 NUDT4 gene_id:11163|Hs108|chr12 (180 aa)
initn: 1217 init1: 1217 opt: 1217 Z-score: 1527.8 bits: 289.3 E(32554): 8.9e-79
Smith-Waterman score: 1217; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KA0 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 GAAVREVYEEAGVKGKLGRLLGIFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GAAVREVYEEAGVKGKLGRLLGIFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 KVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR
130 140 150 160 170 180
>>CCDS9044.1 NUDT4 gene_id:11163|Hs108|chr12 (181 aa)
initn: 654 init1: 637 opt: 1205 Z-score: 1512.7 bits: 286.5 E(32554): 6.1e-78
Smith-Waterman score: 1205; 99.4% identity (99.4% similar) in 181 aa overlap (1-180:1-181)
10 20 30 40 50 60
pF1KA0 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG
10 20 30 40 50 60
70 80 90 100 110
pF1KA0 GAAVREVYEEAGVKGKLGRLLGIFE-NQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREW
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS90 GAAVREVYEEAGVKGKLGRLLGIFEQNQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREW
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA0 FKVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 FKVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSV
130 140 150 160 170 180
180
pF1KA0 R
:
CCDS90 R
>>CCDS43952.1 NUDT11 gene_id:55190|Hs108|chrX (164 aa)
initn: 1023 init1: 543 opt: 1005 Z-score: 1263.4 bits: 240.2 E(32554): 4.8e-64
Smith-Waterman score: 1005; 90.8% identity (96.3% similar) in 163 aa overlap (2-163:1-163)
10 20 30 40 50 60
pF1KA0 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG
:: ::::::::: :::::::::::::::.::::::::::::::.:::::::::::::::
CCDS43 MKCKPNQTRTYDPEGFKKRAACLCFRSEREDEVLLVSSSRYPDRWIVPGGGMEPEEEPG
10 20 30 40 50
70 80 90 100 110
pF1KA0 GAAVREVYEEAGVKGKLGRLLGIFE-NQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREW
::::::::::::::::::::::.:: :::::::::::::::::.::::::::.:::::::
CCDS43 GAAVREVYEEAGVKGKLGRLLGVFEQNQDRKHRTYVYVLTVTELLEDWEDSVSIGRKREW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KA0 FKVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSV
::::::::::::::::::::::::::: ::.:::: .:: ::..
CCDS43 FKVEDAIKVLQCHKPVHAEYLEKLKLGGSPTNGNSMAPSSPDSDP
120 130 140 150 160
180
pF1KA0 R
>>CCDS35278.1 NUDT10 gene_id:170685|Hs108|chrX (164 aa)
initn: 995 init1: 542 opt: 995 Z-score: 1250.9 bits: 237.9 E(32554): 2.4e-63
Smith-Waterman score: 995; 90.2% identity (95.7% similar) in 163 aa overlap (2-163:1-163)
10 20 30 40 50 60
pF1KA0 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG
:: ::::::::: :::::::::::::::.::::::::::::::.:::::::::::::::
CCDS35 MKCKPNQTRTYDPEGFKKRAACLCFRSEREDEVLLVSSSRYPDRWIVPGGGMEPEEEPG
10 20 30 40 50
70 80 90 100 110
pF1KA0 GAAVREVYEEAGVKGKLGRLLGIFE-NQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREW
::::::::::::::::::::::.:: ::: :::::::::::::.::::::::.:::::::
CCDS35 GAAVREVYEEAGVKGKLGRLLGVFEQNQDPKHRTYVYVLTVTELLEDWEDSVSIGRKREW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KA0 FKVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSV
::::::::::::::::::::::::::: ::.:::: .:: ::..
CCDS35 FKVEDAIKVLQCHKPVHAEYLEKLKLGGSPTNGNSMAPSSPDSDP
120 130 140 150 160
180
pF1KA0 R
>>CCDS76584.1 NUDT4 gene_id:11163|Hs108|chr12 (128 aa)
initn: 850 init1: 850 opt: 850 Z-score: 1071.2 bits: 204.3 E(32554): 2.4e-53
Smith-Waterman score: 850; 100.0% identity (100.0% similar) in 128 aa overlap (53-180:1-128)
30 40 50 60 70 80
pF1KA0 CLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLG
::::::::::::::::::::::::::::::
CCDS76 MEPEEEPGGAAVREVYEEAGVKGKLGRLLG
10 20 30
90 100 110 120 130 140
pF1KA0 IFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDAIKVLQCHKPVHAEYLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 IFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDAIKVLQCHKPVHAEYLEK
40 50 60 70 80 90
150 160 170 180
pF1KA0 LKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR
::::::::::::::::::::::::::::::::::::::
CCDS76 LKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR
100 110 120
>>CCDS4791.1 NUDT3 gene_id:11165|Hs108|chr6 (172 aa)
initn: 845 init1: 845 opt: 845 Z-score: 1063.1 bits: 203.2 E(32554): 6.8e-53
Smith-Waterman score: 845; 79.1% identity (90.5% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KA0 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG
:::.: ::::::: .:.::::::::::::.:.:::::::::.::.::::::::::::::.
CCDS47 MMKLKSNQTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 GAAVREVYEEAGVKGKLGRLLGIFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWF
:::::: ::::::: ::::.::::::.:::::::::: :::.:::::::::::::::::
CCDS47 VAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 KVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR
:.:::::::: ::::.: :.: :. : : ::. .: .
CCDS47 KIEDAIKVLQYHKPVQASYFETLRQGYSANNGTPVVATTYSVSAQSSMSGIR
130 140 150 160 170
>>CCDS73504.1 NUDT4 gene_id:11163|Hs108|chr12 (129 aa)
initn: 649 init1: 637 opt: 838 Z-score: 1056.1 bits: 201.5 E(32554): 1.7e-52
Smith-Waterman score: 838; 99.2% identity (99.2% similar) in 129 aa overlap (53-180:1-129)
30 40 50 60 70 80
pF1KA0 CLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLG
::::::::::::::::::::::::::::::
CCDS73 MEPEEEPGGAAVREVYEEAGVKGKLGRLLG
10 20 30
90 100 110 120 130 140
pF1KA0 IFE-NQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDAIKVLQCHKPVHAEYLE
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IFEQNQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDAIKVLQCHKPVHAEYLE
40 50 60 70 80 90
150 160 170 180
pF1KA0 KLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR
:::::::::::::::::::::::::::::::::::::::
CCDS73 KLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR
100 110 120
180 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:42:52 2016 done: Thu Nov 3 19:42:52 2016
Total Scan time: 2.090 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]