(Circular) (Six-base) MAPSORT of: pF1KA0530.seq Check: 4683 from: 1 to: 9905 pF1KA0530 9905 bp With 182 enzymes: SgfI * January 9, 2009 11:10 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2855 2855 Size: 9905 AatII G_ACGT'C Cuts at: 3391 3391 Size: 9905 AccI GT'mk_AC Cuts at: 179 987 5495 6943 179 Size: 808 4508 1448 3141 Fragments arranged by size: 4508 3141 1448 808 Acc65I G'GTAC_C Cuts at: 6921 6921 Size: 9905 AclI AA'CG_TT Cuts at: 6679 9745 6679 Size: 3066 6839 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1274 1316 1334 2703 3481 3929 3992 4103 4235 Size: 42 18 1369 778 448 63 111 132 Cuts at: 4235 4679 4904 5342 5354 5897 6538 6694 6769 Size: 444 225 438 12 543 641 156 75 Cuts at: 6769 7730 8162 8515 9177 1274 Size: 961 432 353 662 2002 Fragments arranged by size: 2002 1369 961 778 662 641 543 448 444 438 432 353 225 156 132 111 75 63 42 18 12 AfeI AGC'GCT Cuts at: 868 868 Size: 9905 AflII C'TTAA_G Cuts at: 1924 1924 Size: 9905 AflIII A'CryG_T Cuts at: 4588 6086 6088 7257 9057 9338 4588 Size: 1498 2 1169 1800 281 5155 Fragments arranged by size: 5155 1800 1498 1169 281 2 AgeI A'CCGG_T Cuts at: 2208 2208 Size: 9905 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 6074 6074 Size: 9905 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 3562 3594 3562 Size: 32 9873 AlwNI CAG_nnn'CTG Cuts at: 760 4390 6397 7210 8648 760 Size: 3630 2007 813 1438 2017 Fragments arranged by size: 3630 2017 2007 1438 813 ApaI G_GGCC'C Cuts at: 2782 2782 Size: 9905 ApaLI G'TGCA_C Cuts at: 8743 8743 Size: 9905 ApoI r'AATT_y Cuts at: 379 431 769 819 1094 1737 1749 1870 2020 Size: 52 338 50 275 643 12 121 150 Cuts at: 2020 2427 2851 3027 3522 3843 3930 3951 4029 Size: 407 424 176 495 321 87 21 78 Cuts at: 4029 4247 4505 4558 4611 5118 5242 5273 6606 Size: 218 258 53 53 507 124 31 1333 Cuts at: 6606 6909 9258 9514 379 Size: 303 2349 256 770 Fragments arranged by size: 2349 1333 770 643 507 495 424 407 338 321 303 275 258 256 218 176 150 124 121 87 78 53 53 52 50 31 21 12 AseI AT'TA_AT Cuts at: 20 6205 20 Size: 6185 3720 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 9905 AvaI C'yCGr_G Cuts at: 6925 6925 Size: 9905 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 6077 6110 6077 Size: 33 9872 BamHI G'GATC_C Cuts at: 6595 6930 6595 Size: 335 9570 BanI G'GyrC_C Cuts at: 3244 6921 7335 7583 7618 3244 Size: 3677 414 248 35 5531 Fragments arranged by size: 5531 3677 414 248 35 BanII G_rGCy'C Cuts at: 1460 2782 6484 6919 7949 1460 Size: 1322 3702 435 1030 3416 Fragments arranged by size: 3702 3416 1322 1030 435 BbeI G_GCGC'C Cuts at: 7339 7587 7339 Size: 248 9657 BbsI GAAGACnn'nnnn_ Cuts at: 125 604 863 2095 3469 3980 125 Size: 479 259 1232 1374 511 6050 Fragments arranged by size: 6050 1374 1232 511 479 259 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 5522 5556 5522 Size: 34 9871 BciVI GTATCCnnnnn_n' Cuts at: 5897 7803 8859 9905 5897 Size: 1906 1056 1046 5897 Fragments arranged by size: 5897 1906 1056 1046 BclI T'GATC_A Cuts at: 945 1122 1218 7425 945 Size: 177 96 6207 3425 Fragments arranged by size: 6207 3425 177 96 BfrBI ATG'CAT Cuts at: 3289 3289 Size: 9905 BglII A'GATC_T Cuts at: 1336 2463 5154 7420 9457 1336 Size: 1127 2691 2266 2037 1784 Fragments arranged by size: 2691 2266 2037 1784 1127 BlpI GC'TnA_GC Cuts at: 7017 7017 Size: 9905 Bme1580I G_kGCm'C Cuts at: 2782 2909 4629 7530 7623 8747 2782 Size: 127 1720 2901 93 1124 3940 Fragments arranged by size: 3940 2901 1720 1124 127 93 BmrI ACTGGGnnnn_n' Cuts at: 2271 2908 3224 5877 7117 7198 7533 9677 2271 Size: 637 316 2653 1240 81 335 2144 2499 Fragments arranged by size: 2653 2499 2144 1240 637 335 316 81 BmtI G_CTAG'C Cuts at: 4759 4759 Size: 9905 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 950 8272 950 Size: 7322 2583 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1295 1994 4280 4505 6498 1295 Size: 699 2286 225 1993 4702 Fragments arranged by size: 4702 2286 1993 699 225 Bpu10I CC'TnA_GC Cuts at: 1459 2804 1459 Size: 1345 8560 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2942 3880 4063 5056 6547 7081 7960 8674 8972 Size: 938 183 993 1491 534 879 714 298 Cuts at: 8972 2942 Size: 3875 Fragments arranged by size: 3875 1491 993 938 879 714 534 298 183 BsaI GGTCTCn'nnnn_ Cuts at: 4807 6226 9609 4807 Size: 1419 3383 5103 Fragments arranged by size: 5103 3383 1419 BsaAI yAC'GTr Cuts at: 1148 6089 7258 1148 Size: 4941 1169 3795 Fragments arranged by size: 4941 3795 1169 BsaBI GATnn'nnATC Cuts at: 6 318 7419 9456 6 Size: 312 7101 2037 455 Fragments arranged by size: 7101 2037 455 312 BsaHI Gr'CG_yC Cuts at: 860 3388 7336 7584 8286 9782 860 Size: 2528 3948 248 702 1496 983 Fragments arranged by size: 3948 2528 1496 983 702 248 BsaWI w'CCGG_w Cuts at: 2208 7094 7615 8293 8704 8851 9125 2208 Size: 4886 521 678 411 147 274 2988 Fragments arranged by size: 4886 2988 678 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1874 1904 4323 4353 1874 Size: 30 2419 30 7426 Fragments arranged by size: 7426 2419 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1220 1502 3626 5014 5539 6469 6544 1220 Size: 282 2124 1388 525 930 75 4581 Fragments arranged by size: 4581 2124 1388 930 525 282 75 BseYI C'CCAG_C Cuts at: 7330 8088 8753 9161 7330 Size: 758 665 408 8074 Fragments arranged by size: 8074 758 665 408 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 2729 5797 6735 2729 Size: 3068 938 5899 Fragments arranged by size: 5899 3068 938 BsiEI CG_ry'CG Cuts at: 104 5542 7447 7493 8723 104 Size: 5438 1905 46 1230 1286 Fragments arranged by size: 5438 1905 1286 1230 46 BsiHKAI G_wGCw'C Cuts at: 1460 3487 6484 6919 7697 7887 8747 1460 Size: 2027 2997 435 778 190 860 2618 Fragments arranged by size: 2997 2618 2027 860 778 435 190 BsmI GAATG_Cn' Cuts at: 3224 5769 3224 Size: 2545 7360 Bsp1286I G_dGCh'C Cuts at: 1460 2782 2909 3487 4629 6484 6919 7530 7623 Size: 1322 127 578 1142 1855 435 611 93 Cuts at: 7623 7697 7887 7949 8747 1460 Size: 74 190 62 798 2618 Fragments arranged by size: 2618 1855 1322 1142 798 611 578 435 190 127 93 74 62 BspHI T'CATG_A Cuts at: 1125 5319 8337 1125 Size: 4194 3018 2693 Fragments arranged by size: 4194 3018 2693 BspMI ACCTGCnnnn'nnnn_ Cuts at: 2535 2855 5169 6955 7169 7471 7852 2535 Size: 320 2314 1786 214 302 381 4588 Fragments arranged by size: 4588 2314 1786 381 320 302 214 BsrBI CCG'CTC Cuts at: 50 8197 8251 9735 9900 50 Size: 8147 54 1484 165 55 Fragments arranged by size: 8147 1484 165 55 54 BsrDI GCAATG_nn' Cuts at: 6111 7817 6111 Size: 1706 8199 BsrFI r'CCGG_y Cuts at: 2208 4722 7903 8084 2208 Size: 2514 3181 181 4029 Fragments arranged by size: 4029 3181 2514 181 BsrGI T'GTAC_A Cuts at: 4591 5142 5863 6684 4591 Size: 551 721 821 7812 Fragments arranged by size: 7812 821 721 551 BssSI C'ACGA_G Cuts at: 3542 8176 8884 3542 Size: 4634 708 4563 Fragments arranged by size: 4634 4563 708 BstAPI GCAn_nnn'nTGC Cuts at: 7282 7282 Size: 9905 BstBI TT'CG_AA Cuts at: 8266 8266 Size: 9905 BstEII G'GTnAC_C Cuts at: 1771 1771 Size: 9905 BstXI CCAn_nnnn'nTGG Cuts at: 2898 5458 2898 Size: 2560 7345 BstYI r'GATC_y Cuts at: 1 1336 2463 2508 3078 3577 4057 5154 6595 Size: 1335 1127 45 570 499 480 1097 1441 Cuts at: 6595 6930 7397 7420 7755 8001 8307 8319 8405 Size: 335 467 23 335 246 306 12 86 Cuts at: 8405 9457 1 Size: 1052 449 Fragments arranged by size: 1441 1335 1127 1097 1052 570 499 480 467 449 335 335 306 246 86 45 23 12 BstZ17I GTA'TAC Cuts at: 988 5496 988 Size: 4508 5397 BtgI C'CryG_G Cuts at: 107 2769 5451 107 Size: 2662 2682 4561 Fragments arranged by size: 4561 2682 2662 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 7855 8036 8199 7855 Size: 181 163 9561 Fragments arranged by size: 9561 181 163 BtsI GCAGTG_nn' Cuts at: 496 1620 4847 6545 6723 7148 496 Size: 1124 3227 1698 178 425 3253 Fragments arranged by size: 3253 3227 1698 1124 425 178 ClaI AT'CG_AT Cuts at: 5073 5073 Size: 9905 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 3320 3355 3320 Size: 35 9870 DraI TTT'AAA Cuts at: 816 2121 3075 3590 4572 6904 816 Size: 1305 954 515 982 2332 3817 Fragments arranged by size: 3817 2332 1305 982 954 515 DraIII CAC_nnn'GTG Cuts at: 2902 2902 Size: 9905 DrdI GACnn_nn'nnGTC Cuts at: 7611 8955 7611 Size: 1344 8561 EaeI y'GGCC_r Cuts at: 7490 7664 8055 8082 9427 7490 Size: 174 391 27 1345 7968 Fragments arranged by size: 7968 1345 391 174 27 EagI C'GGCC_G Cuts at: 7490 7490 Size: 9905 EarI CTCTTCn'nnn_ Cuts at: 185 277 2557 2996 5177 6316 7928 8138 185 Size: 92 2280 439 2181 1139 1612 210 1952 Fragments arranged by size: 2280 2181 1952 1612 1139 439 210 92 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 8113 8855 9001 9715 8113 Size: 742 146 714 8303 Fragments arranged by size: 8303 742 714 146 EcoICRI GAG'CTC Cuts at: 1458 6482 6917 1458 Size: 5024 435 4446 Fragments arranged by size: 5024 4446 435 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1274 1295 1316 1334 1994 2703 3481 3929 3992 Size: 21 21 18 660 709 778 448 63 Cuts at: 3992 4103 4235 4280 4505 4679 4904 5342 5354 Size: 111 132 45 225 174 225 438 12 Cuts at: 5354 5897 6498 6538 6694 6769 7730 8162 8515 Size: 543 601 40 156 75 961 432 353 Cuts at: 8515 9177 1274 Size: 662 2002 Fragments arranged by size: 2002 961 778 709 662 660 601 543 448 438 432 353 225 225 174 156 132 111 75 63 45 40 21 21 18 12 EcoO109I rG'GnC_Cy Cuts at: 2778 7044 2778 Size: 4266 5639 EcoRI G'AATT_C Cuts at: 379 1737 3930 4029 6909 379 Size: 1358 2193 99 2880 3375 Fragments arranged by size: 3375 2880 2193 1358 99 EcoRV GAT'ATC Cuts at: 4368 6864 4368 Size: 2496 7409 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 400 1279 1412 7924 400 Size: 879 133 6512 2381 Fragments arranged by size: 6512 2381 879 133 FspI TGC'GCA Cuts at: 7686 7686 Size: 9905 HaeII r_GCGC'y Cuts at: 870 7339 7587 8817 9588 870 Size: 6469 248 1230 771 1187 Fragments arranged by size: 6469 1230 1187 771 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 2488 2520 3303 3335 4323 4355 5386 5418 5839 Size: 32 783 32 988 32 1031 32 421 Cuts at: 5839 5871 6466 6498 7747 7777 7779 7809 2488 Size: 32 595 32 1249 30 2 30 4584 Fragments arranged by size: 4584 1249 1031 988 783 595 421 32 32 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 2330 3810 6944 2330 Size: 1480 3134 5291 Fragments arranged by size: 5291 3134 1480 HindIII A'AGCT_T Cuts at: 1106 1106 Size: 9905 HpaI GTT'AAC Cuts at: 3810 3810 Size: 9905 KasI G'GCGC_C Cuts at: 7335 7583 7335 Size: 248 9657 KpnI G_GTAC'C Cuts at: 6925 6925 Size: 9905 MfeI C'AATT_G Cuts at: 4552 4552 Size: 9905 MluI A'CGCG_T Cuts at: 9338 9338 Size: 9905 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1988 3346 3466 3778 5068 5577 8664 8848 1988 Size: 1358 120 312 1290 509 3087 184 3045 Fragments arranged by size: 3087 3045 1358 1290 509 312 184 120 MscI TGG'CCA Cuts at: 7666 7666 Size: 9905 MslI CAynn'nnrTG Cuts at: 941 1214 1549 3743 4305 4832 6833 7894 8021 Size: 273 335 2194 562 527 2001 1061 127 Cuts at: 8021 941 Size: 2825 Fragments arranged by size: 2825 2194 2001 1061 562 527 335 273 127 MspA1I CmG'CkG Cuts at: 1423 2027 6397 7016 7330 7690 8474 8719 1423 Size: 604 4370 619 314 360 784 245 2609 Fragments arranged by size: 4370 2609 784 619 604 360 314 245 NaeI GCC'GGC Cuts at: 4724 8086 4724 Size: 3362 6543 NarI GG'CG_CC Cuts at: 7336 7584 7336 Size: 248 9657 NcoI C'CATG_G Cuts at: 107 107 Size: 9905 NdeI CA'TA_TG Cuts at: 448 448 Size: 9905 NgoMIV G'CCGG_C Cuts at: 4722 8084 4722 Size: 3362 6543 NheI G'CTAG_C Cuts at: 4755 4755 Size: 9905 NsiI A_TGCA'T Cuts at: 3291 3291 Size: 9905 NspI r_CATG'y Cuts at: 354 409 505 2290 3071 4592 5824 6958 7458 Size: 55 96 1785 781 1521 1232 1134 500 Cuts at: 7458 9061 354 Size: 1603 1198 Fragments arranged by size: 1785 1603 1521 1232 1198 1134 781 500 96 55 PciI A'CATG_T Cuts at: 4588 9057 4588 Size: 4469 5436 PflMI CCAn_nnn'nTGG Cuts at: 2179 2941 3669 3921 2179 Size: 762 728 252 8163 Fragments arranged by size: 8163 762 728 252 PfoI T'CCnGG_A Cuts at: 1688 1688 Size: 9905 PmeI GTTT'AAAC Cuts at: 6904 6904 Size: 9905 PmlI CAC'GTG Cuts at: 6089 6089 Size: 9905 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 8351 8383 8351 Size: 32 9873 PshAI GACnn'nnGTC Cuts at: 1479 1479 Size: 9905 PsiI TTA'TAA Cuts at: 1142 1913 3556 4103 4177 5951 1142 Size: 771 1643 547 74 1774 5096 Fragments arranged by size: 5096 1774 1643 771 547 74 PspOMI G'GGCC_C Cuts at: 2778 2778 Size: 9905 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 2397 2429 6111 6143 2397 Size: 32 3682 32 6159 Fragments arranged by size: 6159 3682 32 32 PstI C_TGCA'G Cuts at: 2532 4365 6540 6952 7637 2532 Size: 1833 2175 412 685 4800 Fragments arranged by size: 4800 2175 1833 685 412 PvuI CG_AT'CG Cuts at: 104 104 Size: 9905 PvuII CAG'CTG Cuts at: 1423 2027 6397 7330 7690 1423 Size: 604 4370 933 360 3638 Fragments arranged by size: 4370 3638 933 604 360 RsrII CG'GwC_CG Cuts at: 8100 8100 Size: 9905 SacI G_AGCT'C Cuts at: 1460 6484 6919 1460 Size: 5024 435 4446 Fragments arranged by size: 5024 4446 435 SalI G'TCGA_C Cuts at: 6942 6942 Size: 9905 SapI GCTCTTCn'nnn_ Cuts at: 7928 8138 7928 Size: 210 9695 SbfI CC_TGCA'GG Cuts at: 6952 6952 Size: 9905 ScaI AGT'ACT Cuts at: 811 907 1227 2439 9422 811 Size: 96 320 1212 6983 1294 Fragments arranged by size: 6983 1294 1212 320 96 SfcI C'TryA_G Cuts at: 33 909 2528 2859 2968 3091 4361 4461 6128 Size: 876 1619 331 109 123 1270 100 1667 Cuts at: 6128 6536 6948 7633 8601 8792 33 Size: 408 412 685 968 191 1146 Fragments arranged by size: 1667 1619 1270 1146 968 876 685 412 408 331 191 123 109 100 SfoI GGC'GCC Cuts at: 7337 7585 7337 Size: 248 9657 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 9905 SgrAI Cr'CCGG_yG Cuts at: 2208 2208 Size: 9905 SmaI CCC'GGG Cuts at: 6927 6927 Size: 9905 SmlI C'TyrA_G Cuts at: 1924 2957 3859 4042 5035 6526 7060 7975 8689 Size: 1033 902 183 993 1491 534 915 714 Cuts at: 8689 8951 1924 Size: 262 2878 Fragments arranged by size: 2878 1491 1033 993 915 902 714 534 262 183 SnaBI TAC'GTA Cuts at: 1148 1148 Size: 9905 SpeI A'CTAG_T Cuts at: 67 6640 67 Size: 6573 3332 SphI G_CATG'C Cuts at: 6958 7458 6958 Size: 500 9405 SspI AAT'ATT Cuts at: 1323 2493 6621 1323 Size: 1170 4128 4607 Fragments arranged by size: 4607 4128 1170 StuI AGG'CCT Cuts at: 564 4689 564 Size: 4125 5780 StyI C'CwwG_G Cuts at: 107 384 4449 7039 7393 107 Size: 277 4065 2590 354 2619 Fragments arranged by size: 4065 2619 2590 354 277 SwaI ATTT'AAAT Cuts at: 3590 3590 Size: 9905 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 2313 2890 7488 7621 8080 8289 2313 Size: 577 4598 133 459 209 3929 Fragments arranged by size: 4598 3929 577 459 209 133 TatI w'GTAC_w Cuts at: 809 905 1225 2044 2437 3232 4311 4591 4735 Size: 96 320 819 393 795 1079 280 144 Cuts at: 4735 5142 5863 5908 6684 6825 9420 809 Size: 407 721 45 776 141 2595 1294 Fragments arranged by size: 2595 1294 1079 819 795 776 721 407 393 320 280 144 141 96 45 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 9422 9454 9422 Size: 32 9873 Tth111I GACn'n_nGTC Cuts at: 7702 7702 Size: 9905 XbaI T'CTAG_A Cuts at: 5439 6936 5439 Size: 1497 8408 XcmI CCAnnnn_n'nnnnTGG Cuts at: 5287 6577 7400 5287 Size: 1290 823 7792 Fragments arranged by size: 7792 1290 823 XmaI C'CCGG_G Cuts at: 6925 6925 Size: 9905 XmnI GAAnn'nnTTC Cuts at: 737 1098 4529 737 Size: 361 3431 6113 Fragments arranged by size: 6113 3431 361 ZraI GAC'GTC Cuts at: 3389 3389 Size: 9905 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BfrBI BglII BlpI Bme1580I BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstEII BstXI BstYI BstZ17I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NsiI NspI PciI PflMI PfoI PmeI PmlI PpiI PshAI PsiI PspOMI PsrI PstI PvuI PvuII RsrII SacI SalI SapI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI SwaI TaqII TatI TstI Tth111I XbaI XcmI XmaI XmnI ZraI Enzymes that do not cut: AhdI AleI AscI AvrII BbvCI BglI BmgBI BsiWI BsmBI BspEI BssHII Bsu36I EcoNI FseI FspAI NotI NruI PacI PasI PpuMI PspXI SacII SanDI SexAI SfiI SrfI XhoI