FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0536, 1007 aa
  1>>>pF1KA0536 1007 - 1007 aa - 1007 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.2792+/-0.00141; mu= -24.7702+/- 0.085
 mean_var=607.8412+/-128.911, 0's: 0 Z-trim(111.0): 307  B-trim: 0 in 0/53
 Lambda= 0.052021
 statistics sampled from 11786 (12071) to 11786 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.371), width:  16
 Scan time:  4.620

The best scores are:                                      opt bits E(32554)
CCDS4488.1 PRPF4B gene_id:8899|Hs108|chr6          (1007) 6560 508.5 2.8e-143


>>CCDS4488.1 PRPF4B gene_id:8899|Hs108|chr6               (1007 aa)
 initn: 6560 init1: 6560 opt: 6560  Z-score: 2685.7  bits: 508.5 E(32554): 2.8e-143
Smith-Waterman score: 6560; 99.9% identity (100.0% similar) in 1007 aa overlap (1-1007:1-1007)

               10        20        30        40        50        60
pF1KA0 MAAAETQSLREQPEMEDANSEKSINEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAAAETQSLREQPEMEDANSEKSINEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 SEEDKDKKHKHKHKHKKHKRKEVIDASDKEGMSPAKRTKLDDLALLEDLEKQRALIKAEL
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS44 SEEDKDKKHKHKHKHKKHKRKEIIDASDKEGMSPAKRTKLDDLALLEDLEKQRALIKAEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 DNELMEGKVQSGMGLILQGYESGSEEEGEIHEKARNGNRSSTRSSSTKGKLELVDNKITT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DNELMEGKVQSGMGLILQGYESGSEEEGEIHEKARNGNRSSTRSSSTKGKLELVDNKITT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 KKRSKSRSKERTRHRSDKKKSKGGIEIVKEKTTRSKSKERKKSKSPSKRSKSQDQARKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KKRSKSRSKERTRHRSDKKKSKGGIEIVKEKTTRSKSKERKKSKSPSKRSKSQDQARKSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 SPTLRRRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSRSPVDLRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SPTLRRRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSRSPVDLRG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 KSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKPR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 DKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRDDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRDDI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 LSRRERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LSRRERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 LRRRSRSRGGRRRRSRSKVKEDKFKGSLSEGMKVEQESSSDDNLEDFDVEEEDEEALIEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LRRRSRSRGGRRRRSRSKVKEDKFKGSLSEGMKVEQESSSDDNLEDFDVEEEDEEALIEQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 RRIQRQAIVQKYKYLAEDSNMSVPSEPSSPQSSTRTRSPSPDDILERVAADVKEYERENV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RRIQRQAIVQKYKYLAEDSNMSVPSEPSSPQSSTRTRSPSPDDILERVAADVKEYERENV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 DTFEASVKAKHNLMTVEQNNGSSQKKLLAPDMFTESDDMFAAYFDSARLRAAGIGKDFKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DTFEASVKAKHNLMTVEQNNGSSQKKLLAPDMFTESDDMFAAYFDSARLRAAGIGKDFKE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 NPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIR
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 NNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKK
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 YGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASH
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 VADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 AMDLKGKMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AMDLKGKMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLI
              910       920       930       940       950       960

              970       980       990      1000       
pF1KA0 GCQRLPEDQRKKVHQLKDLLDQILMLDPAKRISINQALQHAFIQEKI
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GCQRLPEDQRKKVHQLKDLLDQILMLDPAKRISINQALQHAFIQEKI
              970       980       990      1000       




1007 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:40:02 2016 done: Thu Nov  3 09:40:02 2016
 Total Scan time:  4.620 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]