FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KA0556, 1618 aa 1>>>pF1KA0556 1618 - 1618 aa - 1618 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.1349+/-0.00105; mu= 11.5160+/- 0.063 mean_var=160.1752+/-32.243, 0's: 0 Z-trim(109.2): 13 B-trim: 0 in 0/53 Lambda= 0.101339 statistics sampled from 10734 (10739) to 10734 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.33), width: 16 Scan time: 6.420 The best scores are: opt bits E(32554) CCDS32415.1 KIAA0556 gene_id:23247|Hs108|chr16 (1618) 10981 1618.7 0 >>CCDS32415.1 KIAA0556 gene_id:23247|Hs108|chr16 (1618 aa) initn: 10981 init1: 10981 opt: 10981 Z-score: 8678.5 bits: 1618.7 E(32554): 0 Smith-Waterman score: 10981; 99.9% identity (100.0% similar) in 1618 aa overlap (1-1618:1-1618) 10 20 30 40 50 60 pF1KA0 MDGQTLRKAERSWSCSREKKEGYAKDMVTDFDEKHDEYLILLQQRNRILKHLKSKDPVQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MDGQTLRKAERSWSCSREKKEGYAKDMVTDFDEKHDEYLILLQQRNRILKHLKSKDPVQL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KA0 RLEHLEQGFSVYVNGANSELKSSPRKAIHSDFSRSASHTEGTHDYGRRTLFREAEEALRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 RLEHLEQGFSVYVNGANSELKSSPRKAIHSDFSRSASHTEGTHDYGRRTLFREAEEALRR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KA0 SSRTAPSKVQRRGWHQKSVQIRTEAGPRLHIEPPVDYSDDFELCGDVTLQANNTSEDRPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 SSRTAPSKVQRRGWHQKSVQIRTEAGPRLHIEPPVDYSDDFELCGDVTLQANNTSEDRPQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KA0 ELRRSLELSVNLQRKQKDCSSDEYDSIEEDILSEPEPEDPALVGHPRHDRPPSSGDWTQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 ELRRSLELSVNLQRKQKDCSSDEYDSIEEDILSEPEPEDPALVGHPRHDRPPSSGDWTQK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KA0 DVHGEQETEGRSSPGPDTLVVLEFNPASKSHKRERNLSAKRKDNAEVFVPTKPEPNLTPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 DVHGEQETEGRSSPGPDTLVVLEFNPASKSHKRERNLSAKRKDNAEVFVPTKPEPNLTPQ 250 260 270 280 290 300 310 320 330 340 350 360 pF1KA0 APAVFPDQERMCSRPGSRRERPLSATRKTLCEAEYPEEDASAVLQAIQVENAALQRALLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 APAVFPDQERMCSRPGSRRERPLSATRKTLCEAEYPEEDASAVLQAIQVENAALQRALLS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KA0 RKAEQPASPLQDAEGPPAKPWTSLLEEKEETLELLPITTATTTQEPAGAAGGARAINQAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 RKAEQPASPLQDAEGPPAKPWTSLLEEKEETLELLPITTATTTQEPAGAAGGARAINQAM 370 380 390 400 410 420 430 440 450 460 470 480 pF1KA0 DRIGLLGSRQQQKLLKVLQAVESDSAHLGRVVSPTKEQVSDTEDKQRMRADEIKDAIYVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 DRIGLLGSRQQQKLLKVLQAVESDSAHLGRVVSPTKEQVSDTEDKQRMRADEIKDAIYVT 430 440 450 460 470 480 490 500 510 520 530 540 pF1KA0 MEILSNWGNSWWVGLTEVEFFDLNDTKLYVSPHDVDIRNTATPGELGRLVNRNLAGKKDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MEILSNWGNSWWVGLTEVEFFDLNDTKLYVSPHDVDIRNTATPGELGRLVNRNLAGKKDS 490 500 510 520 530 540 550 560 570 580 590 600 pF1KA0 SPWTCPFHPPLQLFFVIRNTRQLGDFHLAKIKVRNYWTADGDLDIGAKNVKLYVNRNLIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 SPWTCPFHPPLQLFFVIRNTRQLGDFHLAKIKVRNYWTADGDLDIGAKNVKLYVNRNLIF 550 560 570 580 590 600 610 620 630 640 650 660 pF1KA0 NGKLDKGDREAPADHSILVDQKNEKSEQLEEAMNAHSEESKGTHEMAGASGDKELGLGCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 NGKLDKGDREAPADHSILVDQKNEKSEQLEEAMNAHSEESKGTHEMAGASGDKELGLGCS 610 620 630 640 650 660 670 680 690 700 710 720 pF1KA0 PPAETLADAKLSSQGNVSGKRKNSTNCRKDSLSQLEEYLRLSAVPTSMGDMPSAPATSPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PPAETLADAKLSSQGNVSGKRKNSTNCRKDSLSQLEEYLRLSAVPTSMGDMPSAPATSPP 670 680 690 700 710 720 730 740 750 760 770 780 pF1KA0 VKCPPVHEEPSLIQQLENLMGRKICEPPGKTPSWLQPSPTGKDRKQGGRKPKPLWLSPEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VKCPPVHEEPSLIQQLENLMGRKICEPPGKTPSWLQPSPTGKDRKQGGRKPKPLWLSPEK 730 740 750 760 770 780 790 800 810 820 830 840 pF1KA0 PLAWKGRLPSDDVIGEGPGETEARDKGLRHEPGWGTSRSVNTKERPQRATTKVHSDDSDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PLAWKGRLPSDDVIGEGPGETEARDKGLRHEPGWGTSRSVNTKERPQRATTKVHSDDSDI 790 800 810 820 830 840 850 860 870 880 890 900 pF1KA0 FNQPPNRERPASGRRGSRKDAGSSSHGDDQPASREDTWSSRTPSRSRWRSEQEHTLHESW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 FNQPPNRERPASGRRGSRKDAGSSSHGDDQPASREDTWSSRTPSRSRWRSEQEHTLHESW 850 860 870 880 890 900 910 920 930 940 950 960 pF1KA0 SSLSAFDRSHRGRISNTELPGDILDELLQQKSSRHSDLPPSKKGEQPGLSRGQDGYSGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 SSLSAFDRSHRGRISNTELPGDILDELLQQKSSRHSDLPPSKKGEQPGLSRGQDGYSGET 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KA0 DAGGDFKIPVLPYGQRLVIDIKSTWGDRHYVGLNGIEIFSSKGEPVQISNIKADPPDINI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 DAGGDFKIPVLPYGQRLVIDIKSTWGDRHYVGLNGIEIFSSKGEPVQISNIKADPPDINI 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KA0 LPAYGKDPRVVTNLIDGVNRTQDDMHVWLAPFTRGRSHSITIDFTHPCHVALIRIWNYNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LPAYGKDPRVVTNLIDGVNRTQDDMHVWLAPFTRGRSHSITIDFTHPCHVALIRIWNYNK 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KA0 SRIHSFRGVKDITMLLDTQCIFEGEIAKASGTLAGAPEHFGDTILFTTDDDILEAIFYSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 SRIHSFRGVKDITMLLDTQCIFEGEIAKASGTLAGAPEHFGDTILFTTDDDILEAIFYSD 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 pF1KA0 EMFDLDVGSLDSLQDEEAMRRPSTADGEGDERPFTQAGLGADERIPELELPSSSPVPQVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 EMFDLDVGSLDSLQDEEAMRRPSTADGEGDERPFTQAGLGADERIPELELPSSSPVPQVT 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 pF1KA0 TPEPGIYHGICLQLNFTASWGDLHYLGLTGLEVVGKEGQALPIHLHQISASPRDLNELPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 TPEPGIYHGICLQLNFTASWGDLHYLGLTGLEVVGKEGQALPIHLHQISASPRDLNELPE 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 pF1KA0 YSDDSRTLDKLIDGTNITMEDEHMWLIPFSPGLDHVVTIRLDRAESIAGLRFWNYNKSPE ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 YSDDSRALDKLIDGTNITMEDEHMWLIPFSPGLDHVVTIRLDRAESIAGLRFWNYNKSPE 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 pF1KA0 DTYRGAKIVHVSLDGLCVSPPEGFLIRKGPGNCHFDFAQEILFVDYLRAQLLPQPARRLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 DTYRGAKIVHVSLDGLCVSPPEGFLIRKGPGNCHFDFAQEILFVDYLRAQLLPQPARRLD 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 pF1KA0 MRSLECASMDYEAPLMPCGFIFQFQLLTSWGDPYYIGLTGLELYDERGEKIPLSENNIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MRSLECASMDYEAPLMPCGFIFQFQLLTSWGDPYYIGLTGLELYDERGEKIPLSENNIAA 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 pF1KA0 FPDSVNSLEGVGGDVRTPDKLIDQVNDTSDGRHMWLAPILPGLVNRVYVIFDLPTTVSMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 FPDSVNSLEGVGGDVRTPDKLIDQVNDTSDGRHMWLAPILPGLVNRVYVIFDLPTTVSMI 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 pF1KA0 KLWNYAKTPHRGVKEFGLLVDDLLVYNGILAMVSHLVGGILPTCEPTVPYHTILFTEDRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 KLWNYAKTPHRGVKEFGLLVDDLLVYNGILAMVSHLVGGILPTCEPTVPYHTILFTEDRD 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 pF1KA0 IRHQEKHTTISNQAEDQDVQMMNENQIITNAKRKQSVVDPALRPKTCISEKETRRRRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 IRHQEKHTTISNQAEDQDVQMMNENQIITNAKRKQSVVDPALRPKTCISEKETRRRRC 1570 1580 1590 1600 1610 1618 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 09:43:53 2016 done: Thu Nov 3 09:43:54 2016 Total Scan time: 6.420 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]