Result of FASTA (ccds) for pF1KA0556
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0556, 1618 aa
  1>>>pF1KA0556 1618 - 1618 aa - 1618 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1349+/-0.00105; mu= 11.5160+/- 0.063
 mean_var=160.1752+/-32.243, 0's: 0 Z-trim(109.2): 13  B-trim: 0 in 0/53
 Lambda= 0.101339
 statistics sampled from 10734 (10739) to 10734 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.33), width:  16
 Scan time:  6.420

The best scores are:                                      opt bits E(32554)
CCDS32415.1 KIAA0556 gene_id:23247|Hs108|chr16     (1618) 10981 1618.7       0


>>CCDS32415.1 KIAA0556 gene_id:23247|Hs108|chr16          (1618 aa)
 initn: 10981 init1: 10981 opt: 10981  Z-score: 8678.5  bits: 1618.7 E(32554):    0
Smith-Waterman score: 10981; 99.9% identity (100.0% similar) in 1618 aa overlap (1-1618:1-1618)

               10        20        30        40        50        60
pF1KA0 MDGQTLRKAERSWSCSREKKEGYAKDMVTDFDEKHDEYLILLQQRNRILKHLKSKDPVQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MDGQTLRKAERSWSCSREKKEGYAKDMVTDFDEKHDEYLILLQQRNRILKHLKSKDPVQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 RLEHLEQGFSVYVNGANSELKSSPRKAIHSDFSRSASHTEGTHDYGRRTLFREAEEALRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RLEHLEQGFSVYVNGANSELKSSPRKAIHSDFSRSASHTEGTHDYGRRTLFREAEEALRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 SSRTAPSKVQRRGWHQKSVQIRTEAGPRLHIEPPVDYSDDFELCGDVTLQANNTSEDRPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSRTAPSKVQRRGWHQKSVQIRTEAGPRLHIEPPVDYSDDFELCGDVTLQANNTSEDRPQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 ELRRSLELSVNLQRKQKDCSSDEYDSIEEDILSEPEPEDPALVGHPRHDRPPSSGDWTQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ELRRSLELSVNLQRKQKDCSSDEYDSIEEDILSEPEPEDPALVGHPRHDRPPSSGDWTQK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 DVHGEQETEGRSSPGPDTLVVLEFNPASKSHKRERNLSAKRKDNAEVFVPTKPEPNLTPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DVHGEQETEGRSSPGPDTLVVLEFNPASKSHKRERNLSAKRKDNAEVFVPTKPEPNLTPQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 APAVFPDQERMCSRPGSRRERPLSATRKTLCEAEYPEEDASAVLQAIQVENAALQRALLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 APAVFPDQERMCSRPGSRRERPLSATRKTLCEAEYPEEDASAVLQAIQVENAALQRALLS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 RKAEQPASPLQDAEGPPAKPWTSLLEEKEETLELLPITTATTTQEPAGAAGGARAINQAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RKAEQPASPLQDAEGPPAKPWTSLLEEKEETLELLPITTATTTQEPAGAAGGARAINQAM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 DRIGLLGSRQQQKLLKVLQAVESDSAHLGRVVSPTKEQVSDTEDKQRMRADEIKDAIYVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DRIGLLGSRQQQKLLKVLQAVESDSAHLGRVVSPTKEQVSDTEDKQRMRADEIKDAIYVT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 MEILSNWGNSWWVGLTEVEFFDLNDTKLYVSPHDVDIRNTATPGELGRLVNRNLAGKKDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEILSNWGNSWWVGLTEVEFFDLNDTKLYVSPHDVDIRNTATPGELGRLVNRNLAGKKDS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 SPWTCPFHPPLQLFFVIRNTRQLGDFHLAKIKVRNYWTADGDLDIGAKNVKLYVNRNLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SPWTCPFHPPLQLFFVIRNTRQLGDFHLAKIKVRNYWTADGDLDIGAKNVKLYVNRNLIF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 NGKLDKGDREAPADHSILVDQKNEKSEQLEEAMNAHSEESKGTHEMAGASGDKELGLGCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NGKLDKGDREAPADHSILVDQKNEKSEQLEEAMNAHSEESKGTHEMAGASGDKELGLGCS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 PPAETLADAKLSSQGNVSGKRKNSTNCRKDSLSQLEEYLRLSAVPTSMGDMPSAPATSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PPAETLADAKLSSQGNVSGKRKNSTNCRKDSLSQLEEYLRLSAVPTSMGDMPSAPATSPP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 VKCPPVHEEPSLIQQLENLMGRKICEPPGKTPSWLQPSPTGKDRKQGGRKPKPLWLSPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VKCPPVHEEPSLIQQLENLMGRKICEPPGKTPSWLQPSPTGKDRKQGGRKPKPLWLSPEK
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 PLAWKGRLPSDDVIGEGPGETEARDKGLRHEPGWGTSRSVNTKERPQRATTKVHSDDSDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PLAWKGRLPSDDVIGEGPGETEARDKGLRHEPGWGTSRSVNTKERPQRATTKVHSDDSDI
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 FNQPPNRERPASGRRGSRKDAGSSSHGDDQPASREDTWSSRTPSRSRWRSEQEHTLHESW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FNQPPNRERPASGRRGSRKDAGSSSHGDDQPASREDTWSSRTPSRSRWRSEQEHTLHESW
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 SSLSAFDRSHRGRISNTELPGDILDELLQQKSSRHSDLPPSKKGEQPGLSRGQDGYSGET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSLSAFDRSHRGRISNTELPGDILDELLQQKSSRHSDLPPSKKGEQPGLSRGQDGYSGET
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 DAGGDFKIPVLPYGQRLVIDIKSTWGDRHYVGLNGIEIFSSKGEPVQISNIKADPPDINI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DAGGDFKIPVLPYGQRLVIDIKSTWGDRHYVGLNGIEIFSSKGEPVQISNIKADPPDINI
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 LPAYGKDPRVVTNLIDGVNRTQDDMHVWLAPFTRGRSHSITIDFTHPCHVALIRIWNYNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LPAYGKDPRVVTNLIDGVNRTQDDMHVWLAPFTRGRSHSITIDFTHPCHVALIRIWNYNK
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 SRIHSFRGVKDITMLLDTQCIFEGEIAKASGTLAGAPEHFGDTILFTTDDDILEAIFYSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SRIHSFRGVKDITMLLDTQCIFEGEIAKASGTLAGAPEHFGDTILFTTDDDILEAIFYSD
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 EMFDLDVGSLDSLQDEEAMRRPSTADGEGDERPFTQAGLGADERIPELELPSSSPVPQVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EMFDLDVGSLDSLQDEEAMRRPSTADGEGDERPFTQAGLGADERIPELELPSSSPVPQVT
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 TPEPGIYHGICLQLNFTASWGDLHYLGLTGLEVVGKEGQALPIHLHQISASPRDLNELPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TPEPGIYHGICLQLNFTASWGDLHYLGLTGLEVVGKEGQALPIHLHQISASPRDLNELPE
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA0 YSDDSRTLDKLIDGTNITMEDEHMWLIPFSPGLDHVVTIRLDRAESIAGLRFWNYNKSPE
       ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YSDDSRALDKLIDGTNITMEDEHMWLIPFSPGLDHVVTIRLDRAESIAGLRFWNYNKSPE
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA0 DTYRGAKIVHVSLDGLCVSPPEGFLIRKGPGNCHFDFAQEILFVDYLRAQLLPQPARRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DTYRGAKIVHVSLDGLCVSPPEGFLIRKGPGNCHFDFAQEILFVDYLRAQLLPQPARRLD
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KA0 MRSLECASMDYEAPLMPCGFIFQFQLLTSWGDPYYIGLTGLELYDERGEKIPLSENNIAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MRSLECASMDYEAPLMPCGFIFQFQLLTSWGDPYYIGLTGLELYDERGEKIPLSENNIAA
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KA0 FPDSVNSLEGVGGDVRTPDKLIDQVNDTSDGRHMWLAPILPGLVNRVYVIFDLPTTVSMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FPDSVNSLEGVGGDVRTPDKLIDQVNDTSDGRHMWLAPILPGLVNRVYVIFDLPTTVSMI
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
pF1KA0 KLWNYAKTPHRGVKEFGLLVDDLLVYNGILAMVSHLVGGILPTCEPTVPYHTILFTEDRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KLWNYAKTPHRGVKEFGLLVDDLLVYNGILAMVSHLVGGILPTCEPTVPYHTILFTEDRD
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610        
pF1KA0 IRHQEKHTTISNQAEDQDVQMMNENQIITNAKRKQSVVDPALRPKTCISEKETRRRRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IRHQEKHTTISNQAEDQDVQMMNENQIITNAKRKQSVVDPALRPKTCISEKETRRRRC
             1570      1580      1590      1600      1610        




1618 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:43:53 2016 done: Thu Nov  3 09:43:54 2016
 Total Scan time:  6.420 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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