Result of FASTA (ccds) for
pF1KA0556
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0556, 1618 aa
1>>>pF1KA0556 1618 - 1618 aa - 1618 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1349+/-0.00105; mu= 11.5160+/- 0.063
mean_var=160.1752+/-32.243, 0's: 0 Z-trim(109.2): 13 B-trim: 0 in 0/53
Lambda= 0.101339
statistics sampled from 10734 (10739) to 10734 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.33), width: 16
Scan time: 6.420
The best scores are: opt bits E(32554)
CCDS32415.1 KIAA0556 gene_id:23247|Hs108|chr16 (1618) 10981 1618.7 0
>>CCDS32415.1 KIAA0556 gene_id:23247|Hs108|chr16 (1618 aa)
initn: 10981 init1: 10981 opt: 10981 Z-score: 8678.5 bits: 1618.7 E(32554): 0
Smith-Waterman score: 10981; 99.9% identity (100.0% similar) in 1618 aa overlap (1-1618:1-1618)
10 20 30 40 50 60
pF1KA0 MDGQTLRKAERSWSCSREKKEGYAKDMVTDFDEKHDEYLILLQQRNRILKHLKSKDPVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MDGQTLRKAERSWSCSREKKEGYAKDMVTDFDEKHDEYLILLQQRNRILKHLKSKDPVQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 RLEHLEQGFSVYVNGANSELKSSPRKAIHSDFSRSASHTEGTHDYGRRTLFREAEEALRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RLEHLEQGFSVYVNGANSELKSSPRKAIHSDFSRSASHTEGTHDYGRRTLFREAEEALRR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SSRTAPSKVQRRGWHQKSVQIRTEAGPRLHIEPPVDYSDDFELCGDVTLQANNTSEDRPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSRTAPSKVQRRGWHQKSVQIRTEAGPRLHIEPPVDYSDDFELCGDVTLQANNTSEDRPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 ELRRSLELSVNLQRKQKDCSSDEYDSIEEDILSEPEPEDPALVGHPRHDRPPSSGDWTQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ELRRSLELSVNLQRKQKDCSSDEYDSIEEDILSEPEPEDPALVGHPRHDRPPSSGDWTQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 DVHGEQETEGRSSPGPDTLVVLEFNPASKSHKRERNLSAKRKDNAEVFVPTKPEPNLTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DVHGEQETEGRSSPGPDTLVVLEFNPASKSHKRERNLSAKRKDNAEVFVPTKPEPNLTPQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 APAVFPDQERMCSRPGSRRERPLSATRKTLCEAEYPEEDASAVLQAIQVENAALQRALLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 APAVFPDQERMCSRPGSRRERPLSATRKTLCEAEYPEEDASAVLQAIQVENAALQRALLS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 RKAEQPASPLQDAEGPPAKPWTSLLEEKEETLELLPITTATTTQEPAGAAGGARAINQAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RKAEQPASPLQDAEGPPAKPWTSLLEEKEETLELLPITTATTTQEPAGAAGGARAINQAM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 DRIGLLGSRQQQKLLKVLQAVESDSAHLGRVVSPTKEQVSDTEDKQRMRADEIKDAIYVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DRIGLLGSRQQQKLLKVLQAVESDSAHLGRVVSPTKEQVSDTEDKQRMRADEIKDAIYVT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 MEILSNWGNSWWVGLTEVEFFDLNDTKLYVSPHDVDIRNTATPGELGRLVNRNLAGKKDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEILSNWGNSWWVGLTEVEFFDLNDTKLYVSPHDVDIRNTATPGELGRLVNRNLAGKKDS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 SPWTCPFHPPLQLFFVIRNTRQLGDFHLAKIKVRNYWTADGDLDIGAKNVKLYVNRNLIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SPWTCPFHPPLQLFFVIRNTRQLGDFHLAKIKVRNYWTADGDLDIGAKNVKLYVNRNLIF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 NGKLDKGDREAPADHSILVDQKNEKSEQLEEAMNAHSEESKGTHEMAGASGDKELGLGCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NGKLDKGDREAPADHSILVDQKNEKSEQLEEAMNAHSEESKGTHEMAGASGDKELGLGCS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 PPAETLADAKLSSQGNVSGKRKNSTNCRKDSLSQLEEYLRLSAVPTSMGDMPSAPATSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PPAETLADAKLSSQGNVSGKRKNSTNCRKDSLSQLEEYLRLSAVPTSMGDMPSAPATSPP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 VKCPPVHEEPSLIQQLENLMGRKICEPPGKTPSWLQPSPTGKDRKQGGRKPKPLWLSPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VKCPPVHEEPSLIQQLENLMGRKICEPPGKTPSWLQPSPTGKDRKQGGRKPKPLWLSPEK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 PLAWKGRLPSDDVIGEGPGETEARDKGLRHEPGWGTSRSVNTKERPQRATTKVHSDDSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PLAWKGRLPSDDVIGEGPGETEARDKGLRHEPGWGTSRSVNTKERPQRATTKVHSDDSDI
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 FNQPPNRERPASGRRGSRKDAGSSSHGDDQPASREDTWSSRTPSRSRWRSEQEHTLHESW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FNQPPNRERPASGRRGSRKDAGSSSHGDDQPASREDTWSSRTPSRSRWRSEQEHTLHESW
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 SSLSAFDRSHRGRISNTELPGDILDELLQQKSSRHSDLPPSKKGEQPGLSRGQDGYSGET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSLSAFDRSHRGRISNTELPGDILDELLQQKSSRHSDLPPSKKGEQPGLSRGQDGYSGET
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 DAGGDFKIPVLPYGQRLVIDIKSTWGDRHYVGLNGIEIFSSKGEPVQISNIKADPPDINI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DAGGDFKIPVLPYGQRLVIDIKSTWGDRHYVGLNGIEIFSSKGEPVQISNIKADPPDINI
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 LPAYGKDPRVVTNLIDGVNRTQDDMHVWLAPFTRGRSHSITIDFTHPCHVALIRIWNYNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LPAYGKDPRVVTNLIDGVNRTQDDMHVWLAPFTRGRSHSITIDFTHPCHVALIRIWNYNK
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 SRIHSFRGVKDITMLLDTQCIFEGEIAKASGTLAGAPEHFGDTILFTTDDDILEAIFYSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SRIHSFRGVKDITMLLDTQCIFEGEIAKASGTLAGAPEHFGDTILFTTDDDILEAIFYSD
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 EMFDLDVGSLDSLQDEEAMRRPSTADGEGDERPFTQAGLGADERIPELELPSSSPVPQVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EMFDLDVGSLDSLQDEEAMRRPSTADGEGDERPFTQAGLGADERIPELELPSSSPVPQVT
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 TPEPGIYHGICLQLNFTASWGDLHYLGLTGLEVVGKEGQALPIHLHQISASPRDLNELPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TPEPGIYHGICLQLNFTASWGDLHYLGLTGLEVVGKEGQALPIHLHQISASPRDLNELPE
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 YSDDSRTLDKLIDGTNITMEDEHMWLIPFSPGLDHVVTIRLDRAESIAGLRFWNYNKSPE
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YSDDSRALDKLIDGTNITMEDEHMWLIPFSPGLDHVVTIRLDRAESIAGLRFWNYNKSPE
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 DTYRGAKIVHVSLDGLCVSPPEGFLIRKGPGNCHFDFAQEILFVDYLRAQLLPQPARRLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DTYRGAKIVHVSLDGLCVSPPEGFLIRKGPGNCHFDFAQEILFVDYLRAQLLPQPARRLD
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 MRSLECASMDYEAPLMPCGFIFQFQLLTSWGDPYYIGLTGLELYDERGEKIPLSENNIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MRSLECASMDYEAPLMPCGFIFQFQLLTSWGDPYYIGLTGLELYDERGEKIPLSENNIAA
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 FPDSVNSLEGVGGDVRTPDKLIDQVNDTSDGRHMWLAPILPGLVNRVYVIFDLPTTVSMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FPDSVNSLEGVGGDVRTPDKLIDQVNDTSDGRHMWLAPILPGLVNRVYVIFDLPTTVSMI
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 KLWNYAKTPHRGVKEFGLLVDDLLVYNGILAMVSHLVGGILPTCEPTVPYHTILFTEDRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KLWNYAKTPHRGVKEFGLLVDDLLVYNGILAMVSHLVGGILPTCEPTVPYHTILFTEDRD
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610
pF1KA0 IRHQEKHTTISNQAEDQDVQMMNENQIITNAKRKQSVVDPALRPKTCISEKETRRRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IRHQEKHTTISNQAEDQDVQMMNENQIITNAKRKQSVVDPALRPKTCISEKETRRRRC
1570 1580 1590 1600 1610
1618 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:43:53 2016 done: Thu Nov 3 09:43:54 2016
Total Scan time: 6.420 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]