FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0562, 925 aa
  1>>>pF1KA0562 925 - 925 aa - 925 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5104+/-0.00107; mu= 12.0339+/- 0.065
 mean_var=132.8859+/-27.447, 0's: 0 Z-trim(108.1): 21  B-trim: 418 in 1/48
 Lambda= 0.111259
 statistics sampled from 9997 (10003) to 9997 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.307), width:  16
 Scan time:  4.090

The best scores are:                                      opt bits E(32554)
CCDS30571.1 CEP104 gene_id:9731|Hs108|chr1         ( 925) 6118 994.1       0


>>CCDS30571.1 CEP104 gene_id:9731|Hs108|chr1              (925 aa)
 initn: 6118 init1: 6118 opt: 6118  Z-score: 5311.5  bits: 994.1 E(32554):    0
Smith-Waterman score: 6118; 100.0% identity (100.0% similar) in 925 aa overlap (1-925:1-925)

               10        20        30        40        50        60
pF1KA0 MPHKIGFVVVSSSGHEDGFSARELMIHAPTVSGWRSPRFCQFPQEIVLQMVERCRIRKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MPHKIGFVVVSSSGHEDGFSARELMIHAPTVSGWRSPRFCQFPQEIVLQMVERCRIRKLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LLAHQYMISSKIEFYISESLPEYFAPYQAERFRRLGYVSLCDNEKTGCKARELKSVYVDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LLAHQYMISSKIEFYISESLPEYFAPYQAERFRRLGYVSLCDNEKTGCKARELKSVYVDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 VGQFLKLIFHQNHVNKYNIYNQVALVAINIIGDPADFSDESNTASREKLIDHYLGHNSED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VGQFLKLIFHQNHVNKYNIYNQVALVAINIIGDPADFSDESNTASREKLIDHYLGHNSED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 PALEGTYARKSDYISPLDDLAFDMYQDPEVAQIIRKLDERKREAVQKERYDYAKKLKQAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PALEGTYARKSDYISPLDDLAFDMYQDPEVAQIIRKLDERKREAVQKERYDYAKKLKQAI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 ADLQKVGERLGRYEVEKRCAVEKEDYDLAKEKKQQMEQYRAEVYEQLELHSLLDAELMRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ADLQKVGERLGRYEVEKRCAVEKEDYDLAKEKKQQMEQYRAEVYEQLELHSLLDAELMRR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 PFDLPLQPLARSGSPCHQKPMPSLPQLEERGTENQFAEPFLQEKPSSYSLTISPQHSAVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PFDLPLQPLARSGSPCHQKPMPSLPQLEERGTENQFAEPFLQEKPSSYSLTISPQHSAVD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 PLLPATDPHPKINAESLPYDERPLPAIRKHYGEAVVEPEMSNADISDARRGGMLGEPEPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PLLPATDPHPKINAESLPYDERPLPAIRKHYGEAVVEPEMSNADISDARRGGMLGEPEPL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 TEKALREASSAIDVLGETLVAEAYCKTWSYREDALLALSKKLMEMPVGTPKEDLKNTLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TEKALREASSAIDVLGETLVAEAYCKTWSYREDALLALSKKLMEMPVGTPKEDLKNTLRA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 SVFLVRRAIKDIVTSVFQASLKLLKMIITQYIPKHKLSKLETAHCVERTIPVLLTRTGDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SVFLVRRAIKDIVTSVFQASLKLLKMIITQYIPKHKLSKLETAHCVERTIPVLLTRTGDS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 SARLRVTAANFIQEMALFKEVKSLQIIPSYLVQPLKANSSVHLAMSQMGLLARLLKDLGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SARLRVTAANFIQEMALFKEVKSLQIIPSYLVQPLKANSSVHLAMSQMGLLARLLKDLGT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 GSSGFTIDNVMKFSVSALEHRVYEVRETAVRIILDMYRQHQASILEYLPPDDSNTRRNIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GSSGFTIDNVMKFSVSALEHRVYEVRETAVRIILDMYRQHQASILEYLPPDDSNTRRNIL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 YKTIFEGFAKIDGRATDAEMRARRKAATEEAEKQKKEEIKALQGQLAALKEIQAEVQEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 YKTIFEGFAKIDGRATDAEMRARRKAATEEAEKQKKEEIKALQGQLAALKEIQAEVQEKE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 SDAVKPKNQDIQGGKAAPAEALGIPDEHYLDNLCIFCGERSESFTEEGLDLHYWKHCLML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SDAVKPKNQDIQGGKAAPAEALGIPDEHYLDNLCIFCGERSESFTEEGLDLHYWKHCLML
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 TRCDHCKQVVEISSLTEHLLTECDKKDGFGKCYRCSEAVFKEELPRHIKHKDCNPAKPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TRCDHCKQVVEISSLTEHLLTECDKKDGFGKCYRCSEAVFKEELPRHIKHKDCNPAKPEK
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 LANRCPLCHENFSPGEEAWKAHLMGPAGCTMNLRKTHILQKAPALQPGKSSAVAASGPLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LANRCPLCHENFSPGEEAWKAHLMGPAGCTMNLRKTHILQKAPALQPGKSSAVAASGPLG
              850       860       870       880       890       900

              910       920     
pF1KA0 SKAGSKIPTPKGGLSKSSSRTYAKR
       :::::::::::::::::::::::::
CCDS30 SKAGSKIPTPKGGLSKSSSRTYAKR
              910       920     




925 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:16:45 2016 done: Wed Nov  2 19:16:45 2016
 Total Scan time:  4.090 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]