Result of FASTA (ccds) for
pF1KA0579
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0579, 949 aa
1>>>pF1KA0579 949 - 949 aa - 949 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9378+/-0.000972; mu= 1.9544+/- 0.059
mean_var=288.0569+/-57.386, 0's: 0 Z-trim(115.5): 26 B-trim: 5 in 1/52
Lambda= 0.075568
statistics sampled from 16019 (16038) to 16019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.493), width: 16
Scan time: 4.290
The best scores are: opt bits E(32554)
CCDS10961.1 ZCCHC14 gene_id:23174|Hs108|chr16 ( 949) 6382 709.8 6.4e-204
CCDS45880.1 ZCCHC2 gene_id:54877|Hs108|chr18 (1178) 545 73.5 2.7e-12
>>CCDS10961.1 ZCCHC14 gene_id:23174|Hs108|chr16 (949 aa)
initn: 6382 init1: 6382 opt: 6382 Z-score: 3774.5 bits: 709.8 E(32554): 6.4e-204
Smith-Waterman score: 6382; 100.0% identity (100.0% similar) in 949 aa overlap (1-949:1-949)
10 20 30 40 50 60
pF1KA0 MASNHPAFSFHQKQVLRQELTQIQSSLNGGGGHGGKGAPGPGGALPTCPACHKITPRTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MASNHPAFSFHQKQVLRQELTQIQSSLNGGGGHGGKGAPGPGGALPTCPACHKITPRTEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 PVSSVSNSLENALHTSAHSTEESLPKRPLGKHSKVSVEKIDLKGLSHTKNDRNVECSFEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PVSSVSNSLENALHTSAHSTEESLPKRPLGKHSKVSVEKIDLKGLSHTKNDRNVECSFEV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 LWSDSSITSVTKSSSEVTEFISKLCQLYPEENLEKLIPCLAGPDAFYVERNHVDLDSGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LWSDSSITSVTKSSSEVTEFISKLCQLYPEENLEKLIPCLAGPDAFYVERNHVDLDSGLR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YLASLPSHVLKNDHVRRFLSTSSPPQQLQSPSPGNPSLSKVGTVMGVSGRPVCGVAGIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YLASLPSHVLKNDHVRRFLSTSSPPQQLQSPSPGNPSLSKVGTVMGVSGRPVCGVAGIPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 SQSGAQHHGQHPAGSAAPLPHCSHAGSAGSALAYRTQMDTSPAILMPSSLQTPQTQEQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SQSGAQHHGQHPAGSAAPLPHCSHAGSAGSALAYRTQMDTSPAILMPSSLQTPQTQEQNG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 ILDWLRKLRLHKYYPVFKQLSMEKFLSLTEEDLNKFESLTMGAKKKLKTQLELEKEKSER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ILDWLRKLRLHKYYPVFKQLSMEKFLSLTEEDLNKFESLTMGAKKKLKTQLELEKEKSER
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 RCLNPSAPPLVTSSGVARVPPTSHVGPVQSGRGSHAAELRVEVEQPHHQLPREGSSSEYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RCLNPSAPPLVTSSGVARVPPTSHVGPVQSGRGSHAAELRVEVEQPHHQLPREGSSSEYS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 SSSSSPMGVQAREESSDSAEENDRRVEIHLESSDKEKPVMLLNHFTSSSARPTAQVLPVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSSSSPMGVQAREESSDSAEENDRRVEIHLESSDKEKPVMLLNHFTSSSARPTAQVLPVQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 NEASSNPSGHHPLPPQMLSAASHITPIRMLNSVHKPERGSADMKLLSSSVHSLLSLEERN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NEASSNPSGHHPLPPQMLSAASHITPIRMLNSVHKPERGSADMKLLSSSVHSLLSLEERN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 KGSGPRSSMKVDKSFGSAMMDVLPASAPHQPVQVLSGLSESSSMSPTVSFGPRTKVVHAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KGSGPRSSMKVDKSFGSAMMDVLPASAPHQPVQVLSGLSESSSMSPTVSFGPRTKVVHAS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 TLDRVLKTAQQPALVVETSTAATGTPSTVLHAARPPIKLLLSSSVPADSAISGQTSCPNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TLDRVLKTAQQPALVVETSTAATGTPSTVLHAARPPIKLLLSSSVPADSAISGQTSCPNN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 VQISVPPAIINPRTALYTANTKVAFSAMSSMPVGPLQGGFCANSNTASPSSHPSTSFANM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VQISVPPAIINPRTALYTANTKVAFSAMSSMPVGPLQGGFCANSNTASPSSHPSTSFANM
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 ATLPSCPAPSSSPALSSVPESSFYSSSGGGGSTGNIPASNPNHHHHHHHQQPPAPPQPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ATLPSCPAPSSSPALSSVPESSFYSSSGGGGSTGNIPASNPNHHHHHHHQQPPAPPQPAP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 PPPGCIVCTSCGCSGSCGSSGLTVSYANYFQHPFSGPSVFTFPFLPFSPMCSSGYVSAQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPPGCIVCTSCGCSGSCGSSGLTVSYANYFQHPFSGPSVFTFPFLPFSPMCSSGYVSAQQ
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 YGGGSTFPVVHAPYSSSGTPDPVLSGQSTFAVPPMQNFMAGTAGVYQTQGLVGSSNGSSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YGGGSTFPVVHAPYSSSGTPDPVLSGQSTFAVPPMQNFMAGTAGVYQTQGLVGSSNGSSH
850 860 870 880 890 900
910 920 930 940
pF1KA0 KKSGNLSCYNCGATGHRAQDCKQPSMDFNRPGTFRLKYAPPAESLDSTD
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KKSGNLSCYNCGATGHRAQDCKQPSMDFNRPGTFRLKYAPPAESLDSTD
910 920 930 940
>>CCDS45880.1 ZCCHC2 gene_id:54877|Hs108|chr18 (1178 aa)
initn: 731 init1: 262 opt: 545 Z-score: 334.1 bits: 73.5 E(32554): 2.7e-12
Smith-Waterman score: 892; 27.1% identity (54.2% similar) in 1004 aa overlap (1-949:265-1178)
10 20 30
pF1KA0 MASNHPAFSFHQKQVLRQELTQIQSSLNGG
::: ::::::::. .::..: .....: ::
CCDS45 GSGPEGGIVEPRVGGGLGSRAQEELLLLFTMASLHPAFSFHQRVTLREHLERLRAALRGG
240 250 260 270 280 290
40 50 60 70 80
pF1KA0 GGHGGKGAPGPGGALPTCPACHKITPRTE---APVSSVSNSLENALHTSAHSTEESLPKR
: : :. ::.. : . ..:. :..: .: ...:
CCDS45 ----------PEDAEVEVEPCKFAGPRAQNNSAHGDYMQNN-ESSLIEQAPIPQDGLTVA
300 310 320 330 340
90 100 110 120 130 140
pF1KA0 PL-GKHSKVSVEKIDLKGLSHTKNDRNVECSFEVLWSDSSITSVTKSSSEVTEFISKLCQ
: ... : .::: :::... . :. : .:.: ::: :.:.:::. .:. ::. :: .
CCDS45 PHRAQREAVHIEKIMLKGVQRKRADKYWEYTFKVNWSDLSVTTVTKTHQELQEFLLKLPK
350 360 370 380 390 400
150 160 170 180 190 200
pF1KA0 LYPEENLEKLI-PCLAGPDAFYVERNHVDLDSGLRYLASLPSHV-LKNDHVRRFLSTSSP
:...: : : . :: : ::. :: : : :.. :....:. :... :
CCDS45 ELSSETFDKTILRALNQGSLKREERRHPDLEPILRQLFSSSSQAFLQSQKVHSFFQSISS
410 420 430 440 450 460
210 220 230 240 250 260
pF1KA0 PQQLQSPSPGNPSLSKVGTVMGVSGRPVCGVAGIPSSQSGAQHHG--QHPAGSAAPLPHC
..:.: . . :: :.. .. . ::....:.. :: . :
CCDS45 -DSLHSINNLQSSL-KTSKILEHLKED--------SSEASSQEEDVLQHA------IIHK
470 480 490 500
270 280 290 300 310 320
pF1KA0 SHAGSAGSALAYRTQMDTSPAILMPSSLQTPQTQEQNGILDWLRKLRLHKYYPVFKQLSM
.:.:. : .. . :: ..: : : .:::::.:: .. .:
CCDS45 KHTGK--SPIVNNIGTSCSPL----DGL-TMQYSEQNGIVDWRKQSCTTIQHP-------
510 520 530 540 550
330 340 350 360 370 380
pF1KA0 EKFLSLTEEDLNKFESLTMGAKKKLKTQLELEKEKSERRCLNPSAPPLVTSSGVARVPPT
:. .. ... . .::. ::: : : : :: :. :: . :. :
CCDS45 EHCVTSADQHSAEKRSLSSINKKKGKPQTEKEKIKKTDNRLNSRINGIRLST-----PQH
560 570 580 590 600
390 400 410 420 430 440
pF1KA0 SHVGPVQSGRGSHAAELRVEVEQPHHQLPREGSSSEYSSSSSSPMGVQAREESSDSAEEN
.: : :. .. ... . : . .::: :: ::: . .:: .: ::.
CCDS45 AHGGTVK--------DVNLDIGSGHDTCGE--TSSESYSSPSSPR--HDGRESFESEEEK
610 620 630 640 650
450 460 470 480 490
pF1KA0 DRRVEIHLESSDKEKPVMLLNHFT---SSSARPTAQVLPVQNEASS-------NPSGHHP
:: .. . :.: . . . . .. . . ...: .:. . :: .. .:. .:
CCDS45 DRDTDSNSEDSGNPSTTRFTGYGSVNQTVTVKPPVQIASLGNENGNLLEDPLNSPKYQHI
660 670 680 690 700 710
500 510 520 530 540
pF1KA0 --LPPQMLSAASHITPIRMLNSVHKPERGSADMKLLSSSVHSLLSLEERNKGS-----GP
.: . ... . :: :.. :. : : .. ...: ... ::
CCDS45 SFMPTLHCVMHNGAQKSEVVVPAPKPADGKTIGMLVPSPV-AISAIRESANSTPVGILGP
720 730 740 750 760 770
550 560 570 580
pF1KA0 RSSMKVDKSFGSAMMDVLP--------ASAP--HQPVQVLS-----GLSESSSMS-PTVS
. ... . . :: .:.: : :: :. : ::: ... :
CCDS45 TACTGESEKHLELLASPLPIPSTFLPHSSTPALHLTVQRLKLPPPQGSSESCTVNIPQQP
780 790 800 810 820 830
590 600 610 620 630 640
pF1KA0 FGPRTKVVHASTLDRVLKTAQQPALVVETSTAATGTPSTVLHAARPPIKLLLSSSVPADS
: . . ... . . .. :. : :. : . : :. :.. ::
CCDS45 PGSLSIASPNTAFIPIHNPGSFPGSPVATTDPITKSASQVVG---------LNQMVPQIE
840 850 860 870 880
650 660 670 680 690 700
pF1KA0 AISGQTSCPNNVQISVPPAIINPRTALYTANTKVAFSAMSSMPVGPLQGGFCANSN----
. .: . :.::.. .: : .: .:. ... .: .:: .: ..:
CCDS45 GNTGTVPQPTNVKVVLPAA------GLSAAQPPASYP----LPGSPLAAGVLPSQNSSVL
890 900 910 920 930
710 720 730 740 750 760
pF1KA0 -TASPSSHPSTSFANMATLPSCPA-PSSSPALSSVPESSFYSSSGGGGSTGNIPA-SNPN
::. : .:... ..: :: :. .:. . : .. :.. . ::. : : .: :
CCDS45 STAATSPQPASAGISQAQATVPPAVPTHTPGPAPSPSPALTHSTAQSDSTSYISAVGNTN
940 950 960 970 980 990
770 780 790 800 810 820
pF1KA0 HHHHHHHQQPPAPPQPAPPPPGCIVCTSCGCSGSCGSSGLTVSYANYFQHPFSGPSVFTF
. .::: : : ::: :::..: . :. .:. :: ..
CCDS45 AN------GTVVPPQQMGSGP----CGSCGRRCSCGTNGNLQLNSYYYPNPMPGP-MYRV
1000 1010 1020 1030 1040
830 840 850 860 870
pF1KA0 P-FLPFSPMCSSGYVSAQQYGGGSTFPVV--HAPYSSSGTPDPVLSGQSTFAVPPMQNFM
: :. . .:...:.. . ..:. .: ..::... . :::...:..... : .:
CCDS45 PSFFTLPSICNGSYLNQAHQSNGNQLPFFLPQTPYANGLVHDPVMGSQANYGMQQMAGF-
1050 1060 1070 1080 1090 1100
880 890 900 910 920 930
pF1KA0 AGTAGVYQTQGLVGSSNGSSHKKSGNLSCYNCGATGHRAQDCKQPSMDFNRPGTFRLKYA
. :: . ..:....::. ::.::.::::::..:: :::::: ::. :. ::.::.::
CCDS45 GRFYPVYPAPNVVANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGTYRLRYA
1110 1120 1130 1140 1150 1160
940
pF1KA0 PP----AESLDSTD
:: ..:::.:
CCDS45 PPLPPSNDTLDSAD
1170
949 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:20:30 2016 done: Wed Nov 2 19:20:31 2016
Total Scan time: 4.290 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]