FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0610, 666 aa
  1>>>pF1KA0610 666 - 666 aa - 666 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8297+/-0.000909; mu= 14.3928+/- 0.055
 mean_var=138.8871+/-27.349, 0's: 0 Z-trim(110.2): 7  B-trim: 0 in 0/51
 Lambda= 0.108829
 statistics sampled from 11420 (11423) to 11420 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.351), width:  16
 Scan time:  4.130

The best scores are:                                      opt bits E(32554)
CCDS9356.1 SPG20 gene_id:23111|Hs108|chr13         ( 666) 4418 705.5  6e-203


>>CCDS9356.1 SPG20 gene_id:23111|Hs108|chr13              (666 aa)
 initn: 4418 init1: 4418 opt: 4418  Z-score: 3757.1  bits: 705.5 E(32554): 6e-203
Smith-Waterman score: 4418; 100.0% identity (100.0% similar) in 666 aa overlap (1-666:1-666)

               10        20        30        40        50        60
pF1KA0 MEQEPQNGEPAEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MEQEPQNGEPAEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISIS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 SKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKGLATSLQNDLQEVPKLYPEFPPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKGLATSLQNDLQEVPKLYPEFPPK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 DMCEKLPEPQSFSSAPQHAEVNGNTSTPSAGAVAAPASLSLPSQSCPAEAPPAYTPQAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 DMCEKLPEPQSFSSAPQHAEVNGNTSTPSAGAVAAPASLSLPSQSCPAEAPPAYTPQAAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 GHYTVSYGTDSGEFSSVGEEFYRNHSQPPPLETLGLDADELILIPNGVQIFFVNPAGEVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 GHYTVSYGTDSGEFSSVGEEFYRNHSQPPPLETLGLDADELILIPNGVQIFFVNPAGEVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 APSYPGYLRIVRFLDNSLDTVLNRPPGFLQVCDWLYPLVPDRSPVLKCTAGAYMFPDTML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 APSYPGYLRIVRFLDNSLDTVLNRPPGFLQVCDWLYPLVPDRSPVLKCTAGAYMFPDTML
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 QAAGCFVGVVLSSELPEDDRELFEDLLRQMSDLRLQANWNRAEEENEFQIPGRTRPSSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 QAAGCFVGVVLSSELPEDDRELFEDLLRQMSDLRLQANWNRAEEENEFQIPGRTRPSSDQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 LKEASGTDVKQLDQGNKDVRHKGKRGKRAKDTSSEEVNLSHIVPCEPVPEEKPKELPEWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LKEASGTDVKQLDQGNKDVRHKGKRGKRAKDTSSEEVNLSHIVPCEPVPEEKPKELPEWS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 EKVAHNILSGASWVSWGLVKGAEITGKAIQKGASKLRERIQPEEKPVEVSPAVTKGLYIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 EKVAHNILSGASWVSWGLVKGAEITGKAIQKGASKLRERIQPEEKPVEVSPAVTKGLYIA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 KQATGGAAKVSQFLVDGVCTVANCVGKELAPHVKKHGSKLVPESLKKDKDGKSPLDGAMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 KQATGGAAKVSQFLVDGVCTVANCVGKELAPHVKKHGSKLVPESLKKDKDGKSPLDGAMV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 VAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVRYKYGYNAGEATHHAVDSAVNVGVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 VAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVRYKYGYNAGEATHHAVDSAVNVGVT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 AYNINNIGIKAMVKKTATQTGHTLLEDYQIVDNSQRENQEGAANVNVRGEKDEQTKEVKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 AYNINNIGIKAMVKKTATQTGHTLLEDYQIVDNSQRENQEGAANVNVRGEKDEQTKEVKE
              610       620       630       640       650       660

             
pF1KA0 AKKKDK
       ::::::
CCDS93 AKKKDK
             




666 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:26:06 2016 done: Wed Nov  2 19:26:07 2016
 Total Scan time:  4.130 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]