Result of FASTA (ccds) for
pF1KA0612
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0612, 1797 aa
1>>>pF1KA0612 1797 - 1797 aa - 1797 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.1433+/-0.00102; mu= -3.6902+/- 0.062
mean_var=460.6700+/-92.900, 0's: 0 Z-trim(116.8): 25 B-trim: 0 in 0/55
Lambda= 0.059756
statistics sampled from 17401 (17422) to 17401 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.535), width: 16
Scan time: 8.920
The best scores are: opt bits E(32554)
CCDS45742.1 TSPOAP1 gene_id:9256|Hs108|chr17 (1797) 12234 1070.5 0
CCDS11605.1 TSPOAP1 gene_id:9256|Hs108|chr17 (1857) 10982 962.6 0
CCDS46665.1 RIMBP3 gene_id:85376|Hs108|chr22 (1639) 627 69.8 9e-11
>>CCDS45742.1 TSPOAP1 gene_id:9256|Hs108|chr17 (1797 aa)
initn: 12234 init1: 12234 opt: 12234 Z-score: 5714.2 bits: 1070.5 E(32554): 0
Smith-Waterman score: 12234; 99.7% identity (99.8% similar) in 1797 aa overlap (1-1797:1-1797)
10 20 30 40 50 60
pF1KA0 MEQLTTLPRPGDPGAMEPWALPTWHSWTPGRGGEPSSAAPSIADTPPAALQLQELRSEES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MEQLTTLPRPGDPGAMEPWALPTWHSWTPGRGGEPSSAAPSIADTPPAALQLQELRSEES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 SKPKGDGSSRPVGGTDPEGAEACLPSLGQQASSSGPACQRPEDEEVEAFLKAKLNMSFGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SKPKGDGSSRPVGGTDPEGAEACLPSLGQQASSSGPACQRPEDEEVEAFLKAKLNMSFGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 RPNLELLRALGELRQRCAILKEENQMLRKSSFPETEEKVRRLKRKNAELAVIAKRLEERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RPNLELLRALGELRQRCAILKEENQMLRKSSFPETEEKVRRLKRKNAELAVIAKRLEERA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 RKLQETNLRVEGPQWLHVRDFDRLLRESQREVLRLQRQIALRNQRETLPLPPSWPPGPAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RKLQETNLRVEGPQWLHVRDFDRLLRESQREVLRLQRQIALRNQRETLPLPPSWPPGPAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 QARAGAPAPGAPGEATPQEDADNLPVILGEPEKEQRVQQLESELSKKRKKCESLEQEARK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QARAGAPAPGAPGEATPQEDADNLPVILGEPEKEQRVQQLESELSKKRKKCESLEQEARK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 KQRRCEELELQLRQAQNENARLVEENSRLSGRATEKEQVEWENAELRGQLLGVTQERDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KQRRCEELELQLRQAQNENARLVEENSRLSGRATEKEQVEWENAELRGQLLGVTQERDSA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 LRKSQGLQSKLESLEQVLKHMREVAQRRQQLEVEHEQARLSLREKQEEVRRLQQAQAEAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LRKSQGLQSKLESLEQVLKHMREVAQRRQQLEVEHEQARLSLREKQEEVRRLQQAQAEAQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 REHEGAVQLLESTLDSMQARVRELEEQCRSQTEQFSLLAQELQAFRLHPGPLDLLTSALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 REHEGAVQLLESTLDSMQARVRELEEQCRSQTEQFSLLAQELQAFRLHPGPLDLLTSALD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 CGSLGDCPPPPCCCSIPQPCRGSGPKDLDLPPGSPGRCTPKSSEPAPATLTGVPRRTAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CGSLGDCPPPPCCCSIPQPCRGSGPKDLDLPPGSPGRCTPKSSEPAPATLTGVPRRTAKK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 AESLSNSSHSESIHNSPKSCPTPEVDTASEVEELEADSVSLLPAAPEGSRGGARIQVFLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AESLSNSSHSESIHNSPKSCPTPEVDTASEVEELEADSVSLLPAAPEGSRGGARIQVFLA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 RYSYNPFEGPNENPEAELPLTAGEYIYIYGNMDEDGFFEGELMDGRRGLVPSNFVERVSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RYSYNPFEGPNENPEAELPLTAGEYIYIYGNMDEDGFFEGELMDGRRGLVPSNFVERVSD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 DDLLTSLPPELADLSHSSGPELSFLSVGGGGSSSGGQSSVGRSQPRPEEEDAGDELSLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DDLLTSLPPELADLSHSSGPELSFLSVGGGGSSSGGQSSVGRSQPRPEEEDAGDELSLSP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 SPEGLGEPPAVPYPRRLVVLKQLAHSVVLAWEPPPERVELHGFHICVNGELRQALGPGAP
::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS45 SPEGLGEPPAVPYPRRLVVLKQLAHSVVLAWEPPPEQVELHGFHICVNGELRQALGPGAP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 PKAVLENLDLRAGPLHISVQALTSRGSSDPLRCCLAVGARAGVVPSQLRVHRLTATSAEI
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PKAVLENLDLWAGPLHISVQALTSRGSSDPLRCCLAVGARAGVVPSQLRVHRLTATSAEI
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 TWVPGNSNLAHAIYLNGEECPPASPSTYWATFCHLRPGTPYQAQVEAQLPPQGPWEPGWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TWVPGNSNLAHAIYLNGEECPPASPSTYWATFCHLRPGTPYQAQVEAQLPPQGPWEPGWE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 RLEQRAATLQFTTLPAGPPDAPLDVQIEPGPSPGILIISWLPVTIDAAGTSNGVRVTGYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RLEQRAATLQFTTLPAGPPDAPLDVQIEPGPSPGILIISWLPVTIDAAGTSNGVRVTGYA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 IYADGQKIMEVASPTAGSVLVELSQLQLLQVCREVVVRTMSPHGESADSIPAPITPALAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IYADGQKIMEVASPTAGSVLVELSQLQLLQVCREVVVRTMSPHGESADSIPAPITPALAP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 ASLPARVSCPSPHPSPEARAPLASASPGPGDPSSPLQLPAPLGTQEPPGAPPASPSREMP
::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS45 ASLPARVSCPSPHPSPEARAPLASASPGPGDPSSPLQHPAPLGTQEPPGAPPASPSREMA
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 KGSHEDPPAPCSQEEAGAAVLGTSEERTASTSTLGEKDPGPAAPSLAKQEAEWTAGEACP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KGSHEDPPAPCSQEEAGAAVLGTSEERTASTSTLGEKDPGPAAPSLAKQEAEWTAGEACP
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 ASSSTQGARAQQAPNTEMCQGGDPGSGLRPRAEKEDTAELGVHLVNSLVDHGRNSDLSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ASSSTQGARAQQAPNTEMCQGGDPGSGLRPRAEKEDTAELGVHLVNSLVDHGRNSDLSDI
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 QEEEEEEEEEEEEELGSRTCSFQKQVAGNSIRENGAKSQPDPFCETDSDEEILEQILELP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QEEEEEEEEEEEEELGSRTCSFQKQVAGNSIRENGAKSQPDPFCETDSDEEILEQILELP
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 LQQFCSKKLFSIPEEEEEEEEDEEEEKSGAGCSSRDPGPPEPALLGLGCDSGQPRRPGQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LQQFCSKKLFSIPEEEEEEEEDEEEEKSGAGCSSRDPGPPEPALLGLGCDSGQPRRPGQC
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 PLSPESSRAGDCLEDMPGLVGGSSRRRGGGSPEKPPSRRRPPDPREHCSRLLSNNGPQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PLSPESSRAGDCLEDMPGLVGGSSRRRGGGSPEKPPSRRRPPDPREHCSRLLSNNGPQAS
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 GRLGPTRERGGLPVIEGPRTGLEASGRGRLGPSRRCSRGRALEPGLASCLSPKCLEISIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GRLGPTRERGGLPVIEGPRTGLEASGRGRLGPSRRCSRGRALEPGLASCLSPKCLEISIE
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 YDSEDEQEAGSGGISITSSCYPGDGEAWGTATVGRPRGPPKANSGPKPYPRLPAWEKGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YDSEDEQEAGSGGISITSSCYPGDGEAWGTATVGRPRGPPKANSGPKPYPRLPAWEKGEP
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 ERRGRSATGRAKEPLSRATETGEARGQDGSGRRGPQKRGVRVLRPSTAELVPARSPSETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ERRGRSATGRAKEPLSRATETGEARGQDGSGRRGPQKRGVRVLRPSTAELVPARSPSETL
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 AYQHLPVRIFVALFDYDPVSMSPNPDAGEEELPFREGQILKVFGDKDADGFYQGEGGGRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AYQHLPVRIFVALFDYDPVSMSPNPDAGEEELPFREGQILKVFGDKDADGFYQGEGGGRT
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 GYIPCNMVAEVAVDSPAGRQQLLQRGYLSPDILLEGSGNGPFVYSTARTTGPPPKPRRSK
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS45 GYIPCNMVAEVAVDSPAGRQQLLQRGYLSPDILLEGSGNGPFVYSTAHTTGPPPKPRRSK
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA0 KAESEGPAQPCPGPPKLVPSADLKAPHSMVAAFDYNPQESSPNMDVEAELPFRAGDVITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KAESEGPAQPCPGPPKLVPSADLKAPHSMVAAFDYNPQESSPNMDVEAELPFRAGDVITV
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790
pF1KA0 FGGMDDDGFYYGELNGQRGLVPSNFLEGPGPEAGGLDREPRTPQAESQRTRRRRVQC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FGGMDDDGFYYGELNGQRGLVPSNFLEGPGPEAGGLDREPRTPQAESQRTRRRRVQC
1750 1760 1770 1780 1790
>>CCDS11605.1 TSPOAP1 gene_id:9256|Hs108|chr17 (1857 aa)
initn: 12220 init1: 10962 opt: 10982 Z-score: 5130.7 bits: 962.6 E(32554): 0
Smith-Waterman score: 11885; 96.4% identity (96.6% similar) in 1829 aa overlap (29-1797:29-1857)
10 20 30 40 50 60
pF1KA0 MEQLTTLPRPGDPGAMEPWALPTWHSWTPGRGGEPSSAAPSIADTPPAALQLQELRSEES
::::::::::::::::::::::::::::::::
CCDS11 MEQLTTLPRPGDPGAMEPWALPTWHSWTPGRGGEPSSAAPSIADTPPAALQLQELRSEES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 SKPKGDGSSRPVGGTDPEGAEACLPSLGQQASSSGPACQRPEDEEVEAFLKAKLNMSFGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SKPKGDGSSRPVGGTDPEGAEACLPSLGQQASSSGPACQRPEDEEVEAFLKAKLNMSFGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 RPNLELLRALGELRQRCAILKEENQMLRKSSFPETEEKVRRLKRKNAELAVIAKRLEERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RPNLELLRALGELRQRCAILKEENQMLRKSSFPETEEKVRRLKRKNAELAVIAKRLEERA
130 140 150 160 170 180
190
pF1KA0 RKLQETNLRV--------------------------------------------------
::::::::::
CCDS11 RKLQETNLRVVSAPLPRPGTSLELCRKALARQRARDLSETASALLAKDKQIAALQRECRE
190 200 210 220 230 240
200 210 220 230 240
pF1KA0 ----------EGPQWLHVRDFDRLLRESQREVLRLQRQIALRNQRETLPLPPSWPPGPAL
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LQARLTLVGKEGPQWLHVRDFDRLLRESQREVLRLQRQIALRNQRETLPLPPSWPPGPAL
250 260 270 280 290 300
250 260 270 280 290 300
pF1KA0 QARAGAPAPGAPGEATPQEDADNLPVILGEPEKEQRVQQLESELSKKRKKCESLEQEARK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QARAGAPAPGAPGEATPQEDADNLPVILGEPEKEQRVQQLESELSKKRKKCESLEQEARK
310 320 330 340 350 360
310 320 330 340 350 360
pF1KA0 KQRRCEELELQLRQAQNENARLVEENSRLSGRATEKEQVEWENAELRGQLLGVTQERDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KQRRCEELELQLRQAQNENARLVEENSRLSGRATEKEQVEWENAELRGQLLGVTQERDSA
370 380 390 400 410 420
370 380 390 400 410 420
pF1KA0 LRKSQGLQSKLESLEQVLKHMREVAQRRQQLEVEHEQARLSLREKQEEVRRLQQAQAEAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LRKSQGLQSKLESLEQVLKHMREVAQRRQQLEVEHEQARLSLREKQEEVRRLQQAQAEAQ
430 440 450 460 470 480
430 440 450 460 470 480
pF1KA0 REHEGAVQLLESTLDSMQARVRELEEQCRSQTEQFSLLAQELQAFRLHPGPLDLLTSALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 REHEGAVQLLESTLDSMQARVRELEEQCRSQTEQFSLLAQELQAFRLHPGPLDLLTSALD
490 500 510 520 530 540
490 500 510 520 530 540
pF1KA0 CGSLGDCPPPPCCCSIPQPCRGSGPKDLDLPPGSPGRCTPKSSEPAPATLTGVPRRTAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CGSLGDCPPPPCCCSIPQPCRGSGPKDLDLPPGSPGRCTPKSSEPAPATLTGVPRRTAKK
550 560 570 580 590 600
550 560 570 580 590 600
pF1KA0 AESLSNSSHSESIHNSPKSCPTPEVDTASEVEELEADSVSLLPAAPEGSRGGARIQVFLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AESLSNSSHSESIHNSPKSCPTPEVDTASEVEELEADSVSLLPAAPEGSRGGARIQVFLA
610 620 630 640 650 660
610 620 630 640 650 660
pF1KA0 RYSYNPFEGPNENPEAELPLTAGEYIYIYGNMDEDGFFEGELMDGRRGLVPSNFVERVSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RYSYNPFEGPNENPEAELPLTAGEYIYIYGNMDEDGFFEGELMDGRRGLVPSNFVERVSD
670 680 690 700 710 720
670 680 690 700 710 720
pF1KA0 DDLLTSLPPELADLSHSSGPELSFLSVGGGGSSSGGQSSVGRSQPRPEEEDAGDELSLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DDLLTSLPPELADLSHSSGPELSFLSVGGGGSSSGGQSSVGRSQPRPEEEDAGDELSLSP
730 740 750 760 770 780
730 740 750 760 770 780
pF1KA0 SPEGLGEPPAVPYPRRLVVLKQLAHSVVLAWEPPPERVELHGFHICVNGELRQALGPGAP
::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS11 SPEGLGEPPAVPYPRRLVVLKQLAHSVVLAWEPPPEQVELHGFHICVNGELRQALGPGAP
790 800 810 820 830 840
790 800 810 820 830 840
pF1KA0 PKAVLENLDLRAGPLHISVQALTSRGSSDPLRCCLAVGARAGVVPSQLRVHRLTATSAEI
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PKAVLENLDLWAGPLHISVQALTSRGSSDPLRCCLAVGARAGVVPSQLRVHRLTATSAEI
850 860 870 880 890 900
850 860 870 880 890 900
pF1KA0 TWVPGNSNLAHAIYLNGEECPPASPSTYWATFCHLRPGTPYQAQVEAQLPPQGPWEPGWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TWVPGNSNLAHAIYLNGEECPPASPSTYWATFCHLRPGTPYQAQVEAQLPPQGPWEPGWE
910 920 930 940 950 960
910 920 930 940 950 960
pF1KA0 RLEQRAATLQFTTLPAGPPDAPLDVQIEPGPSPGILIISWLPVTIDAAGTSNGVRVTGYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RLEQRAATLQFTTLPAGPPDAPLDVQIEPGPSPGILIISWLPVTIDAAGTSNGVRVTGYA
970 980 990 1000 1010 1020
970 980 990 1000 1010 1020
pF1KA0 IYADGQKIMEVASPTAGSVLVELSQLQLLQVCREVVVRTMSPHGESADSIPAPITPALAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IYADGQKIMEVASPTAGSVLVELSQLQLLQVCREVVVRTMSPHGESADSIPAPITPALAP
1030 1040 1050 1060 1070 1080
1030 1040 1050 1060 1070 1080
pF1KA0 ASLPARVSCPSPHPSPEARAPLASASPGPGDPSSPLQLPAPLGTQEPPGAPPASPSREMP
::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS11 ASLPARVSCPSPHPSPEARAPLASASPGPGDPSSPLQHPAPLGTQEPPGAPPASPSREMA
1090 1100 1110 1120 1130 1140
1090 1100 1110 1120 1130 1140
pF1KA0 KGSHEDPPAPCSQEEAGAAVLGTSEERTASTSTLGEKDPGPAAPSLAKQEAEWTAGEACP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KGSHEDPPAPCSQEEAGAAVLGTSEERTASTSTLGEKDPGPAAPSLAKQEAEWTAGEACP
1150 1160 1170 1180 1190 1200
1150 1160 1170 1180 1190 1200
pF1KA0 ASSSTQGARAQQAPNTEMCQGGDPGSGLRPRAEKEDTAELGVHLVNSLVDHGRNSDLSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ASSSTQGARAQQAPNTEMCQGGDPGSGLRPRAEKEDTAELGVHLVNSLVDHGRNSDLSDI
1210 1220 1230 1240 1250 1260
1210 1220 1230 1240 1250 1260
pF1KA0 QEEEEEEEEEEEEELGSRTCSFQKQVAGNSIRENGAKSQPDPFCETDSDEEILEQILELP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QEEEEEEEEEEEEELGSRTCSFQKQVAGNSIRENGAKSQPDPFCETDSDEEILEQILELP
1270 1280 1290 1300 1310 1320
1270 1280 1290 1300 1310 1320
pF1KA0 LQQFCSKKLFSIPEEEEEEEEDEEEEKSGAGCSSRDPGPPEPALLGLGCDSGQPRRPGQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LQQFCSKKLFSIPEEEEEEEEDEEEEKSGAGCSSRDPGPPEPALLGLGCDSGQPRRPGQC
1330 1340 1350 1360 1370 1380
1330 1340 1350 1360 1370 1380
pF1KA0 PLSPESSRAGDCLEDMPGLVGGSSRRRGGGSPEKPPSRRRPPDPREHCSRLLSNNGPQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PLSPESSRAGDCLEDMPGLVGGSSRRRGGGSPEKPPSRRRPPDPREHCSRLLSNNGPQAS
1390 1400 1410 1420 1430 1440
1390 1400 1410 1420 1430 1440
pF1KA0 GRLGPTRERGGLPVIEGPRTGLEASGRGRLGPSRRCSRGRALEPGLASCLSPKCLEISIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GRLGPTRERGGLPVIEGPRTGLEASGRGRLGPSRRCSRGRALEPGLASCLSPKCLEISIE
1450 1460 1470 1480 1490 1500
1450 1460 1470 1480 1490 1500
pF1KA0 YDSEDEQEAGSGGISITSSCYPGDGEAWGTATVGRPRGPPKANSGPKPYPRLPAWEKGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YDSEDEQEAGSGGISITSSCYPGDGEAWGTATVGRPRGPPKANSGPKPYPRLPAWEKGEP
1510 1520 1530 1540 1550 1560
1510 1520 1530 1540 1550 1560
pF1KA0 ERRGRSATGRAKEPLSRATETGEARGQDGSGRRGPQKRGVRVLRPSTAELVPARSPSETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ERRGRSATGRAKEPLSRATETGEARGQDGSGRRGPQKRGVRVLRPSTAELVPARSPSETL
1570 1580 1590 1600 1610 1620
1570 1580 1590 1600 1610 1620
pF1KA0 AYQHLPVRIFVALFDYDPVSMSPNPDAGEEELPFREGQILKVFGDKDADGFYQGEGGGRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AYQHLPVRIFVALFDYDPVSMSPNPDAGEEELPFREGQILKVFGDKDADGFYQGEGGGRT
1630 1640 1650 1660 1670 1680
1630 1640 1650 1660 1670 1680
pF1KA0 GYIPCNMVAEVAVDSPAGRQQLLQRGYLSPDILLEGSGNGPFVYSTARTTGPPPKPRRSK
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS11 GYIPCNMVAEVAVDSPAGRQQLLQRGYLSPDILLEGSGNGPFVYSTAHTTGPPPKPRRSK
1690 1700 1710 1720 1730 1740
1690 1700 1710 1720 1730 1740
pF1KA0 KAESEGPAQPCPGPPKLVPSADLKAPHSMVAAFDYNPQESSPNMDVEAELPFRAGDVITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KAESEGPAQPCPGPPKLVPSADLKAPHSMVAAFDYNPQESSPNMDVEAELPFRAGDVITV
1750 1760 1770 1780 1790 1800
1750 1760 1770 1780 1790
pF1KA0 FGGMDDDGFYYGELNGQRGLVPSNFLEGPGPEAGGLDREPRTPQAESQRTRRRRVQC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FGGMDDDGFYYGELNGQRGLVPSNFLEGPGPEAGGLDREPRTPQAESQRTRRRRVQC
1810 1820 1830 1840 1850
>>CCDS46665.1 RIMBP3 gene_id:85376|Hs108|chr22 (1639 aa)
initn: 1934 init1: 434 opt: 627 Z-score: 306.8 bits: 69.8 E(32554): 9e-11
Smith-Waterman score: 1497; 29.9% identity (48.5% similar) in 1822 aa overlap (36-1767:293-1632)
10 20 30 40 50 60
pF1KA0 TLPRPGDPGAMEPWALPTWHSWTPGRGGEPSSAAPSIADTPPAALQLQELRSEESSKPKG
: . : . : :. . .. : ..: :
CCDS46 LGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTP--
270 280 290 300 310 320
70 80 90 100 110
pF1KA0 DGSSR------PVGGTDPEGAEACLPS-LGQQASSSGPACQRPEDEEVEAFLKAKLNMSF
:: : :. : .:. : . : ..: : : : :: . :.
CCDS46 -GSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQP-C------EVLTPSPPGLGHHE
330 340 350 360 370
120 130 140 150 160 170
pF1KA0 GDRPNLELLRALGELRQRCAILKEENQMLRKSSFP-ETEEKVRRLKRKNAELAVIAKRLE
. : : .:: : .:: :. ::..::... : ...:::.::: : :::. .:.::
CCDS46 LIKLNWLLAKALWVLARRCYTLQAENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLA
380 390 400 410 420 430
180 190
pF1KA0 ERARKLQETNLR-----------------------------------------VE-----
.::::::::::: .:
CCDS46 DRARKLQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQE
440 450 460 470 480 490
200 210 220
pF1KA0 ----------GP-------------QWLHVRDFDRLLRESQREVLRLQRQIALRNQRETL
:: :::.:::.::: :::::::::::::. :.
CCDS46 CHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQ------
500 510 520 530 540
230 240 250 260 270 280
pF1KA0 PLPPSWPPGPALQARAGAPAPGAPGEATPQEDADNLPVILGEPEKEQRVQQLESELSKKR
:. .:: : : :... : : .... :: ::...:
CCDS46 ------------QGNGGA-WPEAGGQSATCE------------EVRRQMLALERELDQRR
550 560 570 580
290 300 310 320 330 340
pF1KA0 KKCESLEQEARKKQRRCEELELQLRQAQNENARLVEENSRLSGRATEKEQVEWENAELRG
..:. : .: .:: :: : ::. : .:: :.:::.::.... ..:: ::.:.::
CCDS46 RECQELGAQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRG
590 600 610 620 630 640
350 360 370 380 390 400
pF1KA0 QLLGVTQERDSALRKSQGLQSKLESLEQVLKHMREVAQRRQQLEVEHEQARLSLREKQEE
.: . ::::.. :: . ::.:.. . .:.:::. . ..: .:. . .:
CCDS46 HLGRACQERDAS-----GLIA-----EQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKE
650 660 670 680 690
410 420 430 440 450 460
pF1KA0 VRRLQQAQAEAQREHEGAVQLLESTLDSMQARVRELEEQCRSQTEQFSLLAQELQAFRLH
.. :: .. .. . :. :: . . :. .: :
CCDS46 IQALQCRPGHPPEQPWETSQMPESQVKG-------------SRRPKF------------H
700 710 720
470 480 490 500 510 520
pF1KA0 PGPLDLLTSALDCGSLGDCPPPPCCCSIPQPCRGSGPK---DLDLPPGSPGRCT--PKSS
: : .. :: : : .:. : . :. . :. :
CCDS46 ARPEDY--------------------AVSQPNRDIQEKREASLEESPVALGESASVPQVS
730 740 750 760
530 540 550 560 570 580
pF1KA0 EPAPATLTGVPRRTAKKAESLSNSSHSESIHNSPKSCPTPEVDTASEVEELEADSVSL-L
: .::. . .::. : :::: :. . : :: . ::::::..:: ::::: :
CCDS46 ETVPAS-----QPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLAL
770 780 790 800 810 820
590 600 610 620 630 640
pF1KA0 PAAPEGSRGGARIQVFLARYSYNPFEGPNENPEAELPLTAGEYIYIYGNMDEDGFFEGEL
. .. .. ....:.:.:.::::::::..::.:::::::.::::.:.::::::.::::
CCDS46 EMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGEL
830 840 850 860 870 880
650 660 670 680 690 700
pF1KA0 MDGRRGLVPSNFVERVSDDDLLTSLPPELADLSHSSGPELSFLSVGGGGSSSGGQSSVGR
:::::::::::::.. :. . :: . :: :: : : .:
CCDS46 EDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDL----GP--SQLPAG--------------
890 900 910 920
710 720 730 740 750 760
pF1KA0 SQPRPEEEDAGDELSLSPSPEGLGEPPAVPYPRRLVVLKQLAHSVVLAWEPPPERVELHG
: . :::. :: . .: :: . : . : ::
CCDS46 -QDEALEEDS----LLSGKAQG-------------VVDRGLCQMV---------RV----
930 940 950
770 780 790 800 810 820
pF1KA0 FHICVNGELRQALGPGAPPKAVLENLDLRAGPLHISV-QALTSRGSSDPLRCCLAVGARA
:. ... : :: .. .... :.. ..: : :: :.. .
CCDS46 ---------------GSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPL---LGTKGVL
960 970 980 990
830 840 850 860 870
pF1KA0 GVVPSQLRVHRLTATSAEITWVPGNSNLAHAIYLNGEE--CPPASPSTYWATFCHLRPGT
..: ::... .:::::.:::: .. :..::. .: ::. : : :: : :::
CCDS46 RMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCY--TFQGLCPGT
1000 1010 1020 1030 1040 1050
880 890 900 910 920 930
pF1KA0 PYQAQVEAQLPPQGPWEPGWERLEQRAATLQFTTLPAGPPDAPLDVQIEPGPSPGILIIS
:.:.::..:: . . : . ..:. : :: :::: :::: .: :::.:..:
CCDS46 HYRARVEVRLP-RDLLQVYWGTM---SSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVS
1060 1070 1080 1090 1100
940 950 960 970 980 990
pF1KA0 WLPVTIDAAGTSNGVRVTGYAIYADGQKIMEVASPTAGSVLVELSQLQLLQVCREVVVRT
:::::::.::.::::.:::::.:::: :. :::. ::::.:.:.::::. . ..: :::
CCDS46 WLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTLLEFSQLQVPLTWQKVSVRT
1110 1120 1130 1140 1150 1160
1000 1010 1020 1030 1040 1050
pF1KA0 MSPHGESADSIPAPITPALAPASLPARVSCPSPHPSPEARAPLASASPGPGDPSSPLQLP
:: ::: ::.:: : : .. : : ::. :.. . ::::. ..
CCDS46 MSLCGESLDSVPAQI-----PEDF---FMC---HRWPET-PPFSYTC---GDPST-YRVT
1170 1180 1190 1200 1210
1060 1070 1080 1090 1100 1110
pF1KA0 APLGTQEPPGAPPASPSREMPKGSHEDPPAPCSQEEAGAAVLGTSEERTASTSTLGEKDP
:. :. :::.. . :: .: : . : . .: . .:.::
CCDS46 FPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLE-----AFFEEPPRRQSPVSNLG----
1220 1230 1240 1250 1260
1120 1130 1140 1150 1160 1170
pF1KA0 GPAAPSLAKQEAEWTAGEACPASSSTQGARAQQ-APNTEMCQGGDPGSGLRPRAEKEDTA
. :: ::.:.. :..::. : : : ..:
CCDS46 --------------SEGE-CPSSGA--GSQAQELAEAWEGC--------------RKDL-
1270 1280
1180 1190 1200 1210 1220 1230
pF1KA0 ELGVHLVNSLVDHGRNSDLSDIQEEEEEEEEEEEEELGSRTCSFQKQVAGNSIR---ENG
: .. .. : ..:: . :.:. ...:. .:. : . :. : :
CCDS46 -----LFQKSPQNHRPPSVSD----QPGEKENCSQHMGT-----SKSPAPGFIHLRTECG
1290 1300 1310 1320 1330
1240 1250 1260 1270 1280 1290
pF1KA0 AKSQPDPFCETDSDEEILEQILELPLQQFCSKKLFSIPEEEEEEEEDEEEEKSGAGCSSR
...: :. .. ::..:. ...: . : .
CCDS46 PRKEP---CQ---EKAALERVLR--------------------QKQDAQ------GFT--
1340 1350 1360
1300 1310 1320 1330 1340 1350
pF1KA0 DPGPPEPALLGLGCDSGQPRRPGQCPLSPESSRAGDCLEDMPGLVGGSSRRRGGGSPEKP
::. :: : : . :. : . . ::. . :. ::.
CCDS46 ---PPQ-----LGA-SQQYASDFHNVLKEE--QEALCLD-----LWGTERRE--------
1370 1380 1390
1360 1370 1380 1390 1400 1410
pF1KA0 PSRRRPPDPREHCSRLLSNNGPQASGRLGPTRERGGLPVIEGPRTGLEASGRGRLGPSRR
.:: :.: : : .: :: :: .:
CCDS46 --ERREPEP--H-----SRQG-QA------------------------------LGVKRG
1400 1410
1420 1430 1440 1450 1460 1470
pF1KA0 CSRGRALEPGLASCLSPKCLEISIEYDSEDEQEAGSGGISITSSCYPGDGEAWGTATVGR
: . ::. : : .:. :..
CCDS46 C---QLHEPSSALCPAPSAKVIKM------------------------------------
1420 1430
1480 1490 1500 1510 1520 1530
pF1KA0 PRGPPKANSGPKPYPRLPAWEKGEPERRGRSATGRAKEPLSRATETGEARGQDGSGRRGP
::: :. : :.:
CCDS46 PRGGPQ---------------------------------------------QLGTG----
1440
1540 1550 1560 1570 1580 1590
pF1KA0 QKRGVRVLRPSTAELVPARSPSETLAYQHLPVRIFVALFDYDPVSMSPNPDAGEEELPFR
. :.:.:::: ::.:. :: : :.:::: :.
CCDS46 ---------------------------ANTPARVFVALSDYNPLVMSANLKAAEEELVFQ
1450 1460 1470 1480
1600 1610 1620 1630 1640 1650
pF1KA0 EGQILKVFGDKDADGFYQGEGGGRTGYIPCNMVAEVAVDSPAGRQQLLQRGYLSPDILLE
. :.:.:.:..:. :: .: . ..: :: .:::. : : .: .: . ::
CCDS46 KRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEV----GTEQTDRR-WRSP-----
1490 1500 1510 1520 1530
1660 1670 1680 1690 1700 1710
pF1KA0 GSGNGPFVYSTARTTGPPPKPRRSKKAESEGPAQPCPGPPKLVPSADLKAPHSMVAAFDY
..:: : : : : .: . : : .: : .:. :.::.::
CCDS46 AQGNLPSVAHLEDFQGLTI-P--------QGSSLVLQGNSKRLP---LWTPKIMIAALDY
1540 1550 1560 1570 1580
1720 1730 1740 1750 1760 1770
pF1KA0 NPQESSPNMDVEAELPFRAGDVITVFGGMDDDGFYYGELNGQRGLVPSNFLEGPGPEAGG
.: ... . . ...: .:::::. :.: :::.:::::::.:.:::::...:.
CCDS46 DPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH
1590 1600 1610 1620 1630
1780 1790
pF1KA0 LDREPRTPQAESQRTRRRRVQC
1797 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:51:44 2016 done: Fri Nov 4 00:51:45 2016
Total Scan time: 8.920 Total Display time: 0.440
Function used was FASTA [36.3.4 Apr, 2011]