FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0683, 837 aa
  1>>>pF1KA0683 837 - 837 aa - 837 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9608+/-0.000871; mu= 13.3528+/- 0.053
 mean_var=104.3121+/-20.749, 0's: 0 Z-trim(109.3): 2  B-trim: 8 in 1/50
 Lambda= 0.125576
 statistics sampled from 10801 (10803) to 10801 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.332), width:  16
 Scan time:  3.690

The best scores are:                                      opt bits E(32554)
CCDS32363.1 TELO2 gene_id:9894|Hs108|chr16         ( 837) 5447 997.8       0


>>CCDS32363.1 TELO2 gene_id:9894|Hs108|chr16              (837 aa)
 initn: 5447 init1: 5447 opt: 5447  Z-score: 5332.9  bits: 997.8 E(32554):    0
Smith-Waterman score: 5447; 99.9% identity (100.0% similar) in 837 aa overlap (1-837:1-837)

               10        20        30        40        50        60
pF1KA0 MEPAPSRVRLAVREAIHALSSSEDGGHIFCTLESLKRYLGEMEPPALPREKEEFASAHFS
       ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEPAPSEVRLAVREAIHALSSSEDGGHIFCTLESLKRYLGEMEPPALPREKEEFASAHFS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 PVLRCLASRLSPAWLELLPHGRLEELWASFFLEGPADQAFLVLMETIEGAAGPSFRLMKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PVLRCLASRLSPAWLELLPHGRLEELWASFFLEGPADQAFLVLMETIEGAAGPSFRLMKM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 ARLLARFLREGRLAVLMEAQCRQQTQPGFILLRETLLGKVVALPDHLGNRLQQENLAEFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ARLLARFLREGRLAVLMEAQCRQQTQPGFILLRETLLGKVVALPDHLGNRLQQENLAEFF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 PQNYFRLLGEEVVRVLQAVVDSLQGGLDSSVSFVSQVLGKACVHGRQQEILGVLVPRLAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PQNYFRLLGEEVVRVLQAVVDSLQGGLDSSVSFVSQVLGKACVHGRQQEILGVLVPRLAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 LTQGSYLHQRVCWRLVEQVPDRAMEAVLTGLVEAALGPEVLSRLLGNLVVKNKKAQFVMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LTQGSYLHQRVCWRLVEQVPDRAMEAVLTGLVEAALGPEVLSRLLGNLVVKNKKAQFVMT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 QKLLFLQSRLTTPMLQSLLGHLAMDSQRRPLLLQVLKELLETWGSSSAIRHTPLPQQRHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QKLLFLQSRLTTPMLQSLLGHLAMDSQRRPLLLQVLKELLETWGSSSAIRHTPLPQQRHV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 SKAVLICLAQLGEPELRDSRDELLASMMAGVKCRLDSSLPPVRRLGMIVAEVVSARIHPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SKAVLICLAQLGEPELRDSRDELLASMMAGVKCRLDSSLPPVRRLGMIVAEVVSARIHPE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 GPPLKFQYEEDELSLELLALASPQPAGDGASEAGTSLVPATAEPPAETPAEIVDGGVPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GPPLKFQYEEDELSLELLALASPQPAGDGASEAGTSLVPATAEPPAETPAEIVDGGVPQA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 QLAGSDSDLDSDDEFVPYDMSGDRELKSSKAPAYVRDCVEALTTSEDIERWEAALRALEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QLAGSDSDLDSDDEFVPYDMSGDRELKSSKAPAYVRDCVEALTTSEDIERWEAALRALEG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 LVYRSPTATREVSVELAKVLLHLEEKTCVVGFAGLRQRALVAVTVTDPAPVADYLTSQFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LVYRSPTATREVSVELAKVLLHLEEKTCVVGFAGLRQRALVAVTVTDPAPVADYLTSQFY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 ALNYSLRQRMDILDVLTLAAQELSRPGCLGRTPQPGSPSPNTPCLPEAAVSQPGSAVASD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ALNYSLRQRMDILDVLTLAAQELSRPGCLGRTPQPGSPSPNTPCLPEAAVSQPGSAVASD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 WRVVVEERIRSKTQRLSKGGPRQGPAGSPSRFNSVAGHFFFPLLQRFDRPLVTFDLLGED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WRVVVEERIRSKTQRLSKGGPRQGPAGSPSRFNSVAGHFFFPLLQRFDRPLVTFDLLGED
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 QLVLGRLAHTLGALMCLAVNTTVAVAMGKALLEFVWALRFHIDAYVRQGLLSAVSSVLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QLVLGRLAHTLGALMCLAVNTTVAVAMGKALLEFVWALRFHIDAYVRQGLLSAVSSVLLS
              730       740       750       760       770       780

              790       800       810       820       830       
pF1KA0 LPAARLLEDLMDELLEARSWLADVAEKDPDEDCRTLALRALLLLQRLKNRLLPPASP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LPAARLLEDLMDELLEARSWLADVAEKDPDEDCRTLALRALLLLQRLKNRLLPPASP
              790       800       810       820       830       




837 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:32:13 2016 done: Wed Nov  2 19:32:13 2016
 Total Scan time:  3.690 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]