FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0767, 578 aa
  1>>>pF1KA0767 578 - 578 aa - 578 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4327+/-0.00102; mu= 9.3808+/- 0.061
 mean_var=146.7142+/-29.938, 0's: 0 Z-trim(109.2): 19  B-trim: 206 in 1/52
 Lambda= 0.105886
 statistics sampled from 10735 (10744) to 10735 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.33), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(32554)
CCDS33672.1 GRAMD4 gene_id:23151|Hs108|chr22       ( 578) 3826 596.6 2.8e-170


>>CCDS33672.1 GRAMD4 gene_id:23151|Hs108|chr22            (578 aa)
 initn: 3826 init1: 3826 opt: 3826  Z-score: 3170.6  bits: 596.6 E(32554): 2.8e-170
Smith-Waterman score: 3826; 100.0% identity (100.0% similar) in 578 aa overlap (1-578:1-578)

               10        20        30        40        50        60
pF1KA0 MLRRLDKIRFRGHKRDDFLDLAESPNASDTECSDEIPLKVPRTSPRDSEELRDPAGPGTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLRRLDKIRFRGHKRDDFLDLAESPNASDTECSDEIPLKVPRTSPRDSEELRDPAGPGTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 IMATGVQDFNRTEFDRLNEIKGHLEIALLEKHFLQEELRKLREETNAEMLRQELDRERQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IMATGVQDFNRTEFDRLNEIKGHLEIALLEKHFLQEELRKLREETNAEMLRQELDRERQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 RMELEQKVQEVLKARTEEQMAQQPPKGQAQASNGAERRSQGLSSRLQKWFYERFGEYVED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RMELEQKVQEVLKARTEEQMAQQPPKGQAQASNGAERRSQGLSSRLQKWFYERFGEYVED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 FRFQPEENTVETEEPLSARRLTENMRRLKRGAKPVTNFVKNLSALSDWYSVYTSAIAFTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FRFQPEENTVETEEPLSARRLTENMRRLKRGAKPVTNFVKNLSALSDWYSVYTSAIAFTV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 YMNAVWHGWAIPLFLFLAILRLSLNYLIARGWRIQWSIVPEVSEPVEPPKEDLTVSEKFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YMNAVWHGWAIPLFLFLAILRLSLNYLIARGWRIQWSIVPEVSEPVEPPKEDLTVSEKFQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 LVLDVAQKAQNLFGKMADILEKIKNLFMWVQPEITQKLYVALWAAFLASCFFPYRLVGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LVLDVAQKAQNLFGKMADILEKIKNLFMWVQPEITQKLYVALWAAFLASCFFPYRLVGLA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 VGLYAGIKFFLIDFIFKRCPRLRAKYDTPYIIWRSLPTDPQLKERSSAAVSRRLQTTSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VGLYAGIKFFLIDFIFKRCPRLRAKYDTPYIIWRSLPTDPQLKERSSAAVSRRLQTTSSR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 SYVPSAPAGLGKEEDAGRFHSTKKGNFHEIFNLTENERPLAVCENGWRCCLINRDRKMPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SYVPSAPAGLGKEEDAGRFHSTKKGNFHEIFNLTENERPLAVCENGWRCCLINRDRKMPT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 DYIRNGVLYVTENYLCFESSKSGSSKRNKVIKLVDITDIQKYKVLSVLPGSGMGIAVSTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DYIRNGVLYVTENYLCFESSKSGSSKRNKVIKLVDITDIQKYKVLSVLPGSGMGIAVSTP
              490       500       510       520       530       540

              550       560       570        
pF1KA0 STQKPLVFGAMVHRDEAFETILSQYIKITSAAASGGDS
       ::::::::::::::::::::::::::::::::::::::
CCDS33 STQKPLVFGAMVHRDEAFETILSQYIKITSAAASGGDS
              550       560       570        




578 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:59:14 2016 done: Fri Nov  4 00:59:15 2016
 Total Scan time:  3.700 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]