Result of FASTA (omim) for
pF1KA0906
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0906, 1887 aa
1>>>pF1KA0906 1887 - 1887 aa - 1887 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4201+/-0.000445; mu= 19.7649+/- 0.028
mean_var=95.3440+/-18.913, 0's: 0 Z-trim(111.3): 15 B-trim: 0 in 0/56
Lambda= 0.131349
statistics sampled from 19807 (19814) to 19807 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.567), E-opt: 0.2 (0.232), width: 16
Scan time: 18.280
The best scores are: opt bits E(85289)
NP_079199 (OMIM: 607703) nuclear pore membrane gly (1887) 12180 2319.9 0
XP_016861510 (OMIM: 607703) PREDICTED: nuclear por ( 951) 6109 1169.3 0
XP_011531840 (OMIM: 607703) PREDICTED: nuclear por (1012) 6109 1169.3 0
XP_005265051 (OMIM: 607703) PREDICTED: nuclear por (1034) 6109 1169.3 0
XP_016861509 (OMIM: 607703) PREDICTED: nuclear por ( 992) 6072 1162.3 0
XP_016861507 (OMIM: 607703) PREDICTED: nuclear por (1015) 6072 1162.3 0
XP_016861508 (OMIM: 607703) PREDICTED: nuclear por (1004) 6071 1162.1 0
>>NP_079199 (OMIM: 607703) nuclear pore membrane glycopr (1887 aa)
initn: 12180 init1: 12180 opt: 12180 Z-score: 12465.4 bits: 2319.9 E(85289): 0
Smith-Waterman score: 12180; 99.7% identity (99.8% similar) in 1887 aa overlap (1-1887:1-1887)
10 20 30 40 50 60
pF1KA0 MAARGRGLLLLTLSVLLAAGPSAAAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWLSTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MAARGRGLLLLTLSVLLAAGPSAAAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWLSTR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 PEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHDIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 PEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHDIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 IVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALRIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 IVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALRIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 TFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 TFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLIL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 ENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPTRPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_079 ENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPARPV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 AVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRWVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 AVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRWVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 ETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 ETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQTA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 IDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRAHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 IDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRAHG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 GSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSMEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 GSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSMEF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 APCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLPGRLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 APCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLPGRLPP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 GSEHCSGVRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLGSSK
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 GSEHCSGIRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLGSSK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 EMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 EMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVI
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 ALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVVPVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 ALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVVPVS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 SHRNPLLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEAELPMQLVSQDDESGQKKLH
::::: :::::::::::::::::::::::::::::::::: :::::::::::::::::::
NP_079 SHRNPRLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEPELPMQLVSQDDESGQKKLH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 GLQAILVHEASGTTAITATATGYQESHLSSARTKQPHDPLVPLSASIELILVEDVRVSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 GLQAILVHEASGTTAITATATGYQESHLSSARTKQPHDPLVPLSASIELILVEDVRVSPE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 EVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTIMIHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 EVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTIMIHD
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 LCLVFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LCLVFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLK
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 LRAASPIITLVALDEALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LRAASPIITLVALDEALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPP
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 FRLMPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNGTVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 FRLMPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNGTVSG
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 LVQAVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LVQAVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFS
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 FGNAVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVVVKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 FGNAVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVVVKAV
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 DPTSGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAASLSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 DPTSGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAASLSY
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 RVLDGPEKVPVVHVDEKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSYLRVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 RVLDGPEKVPVVHVDEKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSYLRVS
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 MSPVLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIGKGPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MSPVLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIGKGPT
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 NNTCVVRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 NNTCVVRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTS
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 LEGLSGTWSSSANSILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQRIMAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LEGLSGTWSSSANSILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQRIMAR
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 HLHPIQTSFQEATASKVIVAVGDRSSNLRGECTPTQREVIQALHPETLISCQSQFKPAVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 HLHPIQTSFQEATASKVIVAVGDRSSNLRGECTPTQREVIQALHPETLISCQSQFKPAVF
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 DFPSQDVFTVEPQFDTALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASLSSSHFSTEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 DFPSQDVFTVEPQFDTALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASLSSSHFSTEQ
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA0 VGAEVPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFAKEKSFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 VGAEVPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFAKEKSFG
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KA0 WPSFITYTVGVSDPAAGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGPYGASLF
::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 WPSFITYTVGVLDPAAGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGPYGASLF
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KA0 QHFLDSYQVMFFTLFALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYFAASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 QHFLDSYQVMFFTLFALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYFAASS
1810 1820 1830 1840 1850 1860
1870 1880
pF1KA0 PTSPNALPPARKASPPSGLWSPAYASH
:::::::::::::::::::::::::::
NP_079 PTSPNALPPARKASPPSGLWSPAYASH
1870 1880
>>XP_016861510 (OMIM: 607703) PREDICTED: nuclear pore me (951 aa)
initn: 6109 init1: 6109 opt: 6109 Z-score: 6252.4 bits: 1169.3 E(85289): 0
Smith-Waterman score: 6109; 99.6% identity (99.8% similar) in 945 aa overlap (1-945:1-945)
10 20 30 40 50 60
pF1KA0 MAARGRGLLLLTLSVLLAAGPSAAAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWLSTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAARGRGLLLLTLSVLLAAGPSAAAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWLSTR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 PEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHDIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHDIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 IVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALRIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALRIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 TFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLIL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 ENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPTRPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_016 ENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPARPV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 AVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRWVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRWVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 ETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQTA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 IDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRAHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRAHG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 GSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSMEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSMEF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 APCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLPGRLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLPGRLPP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 GSEHCSGVRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLGSSK
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSEHCSGIRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLGSSK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 EMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVI
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 ALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVVPVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVVPVS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 SHRNPLLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEAELPMQLVSQDDESGQKKLH
::::: :::::::::::::::::::::::::::::::::: :::::::::::::::::::
XP_016 SHRNPRLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEPELPMQLVSQDDESGQKKLH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 GLQAILVHEASGTTAITATATGYQESHLSSARTKQPHDPLVPLSASIELILVEDVRVSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLQAILVHEASGTTAITATATGYQESHLSSARTKQPHDPLVPLSASIELILVEDVRVSPE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 EVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTIMIHD
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMSSRRNP
910 920 930 940 950
970 980 990 1000 1010 1020
pF1KA0 LCLVFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLK
>>XP_011531840 (OMIM: 607703) PREDICTED: nuclear pore me (1012 aa)
initn: 6109 init1: 6109 opt: 6109 Z-score: 6252.0 bits: 1169.3 E(85289): 0
Smith-Waterman score: 6109; 99.6% identity (99.8% similar) in 945 aa overlap (1-945:1-945)
10 20 30 40 50 60
pF1KA0 MAARGRGLLLLTLSVLLAAGPSAAAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWLSTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAARGRGLLLLTLSVLLAAGPSAAAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWLSTR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 PEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHDIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHDIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 IVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALRIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALRIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 TFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLIL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 ENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPTRPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_011 ENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPARPV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 AVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRWVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRWVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 ETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQTA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 IDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRAHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRAHG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 GSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSMEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSMEF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 APCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLPGRLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLPGRLPP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 GSEHCSGVRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLGSSK
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSEHCSGIRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLGSSK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 EMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVI
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 ALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVVPVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVVPVS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 SHRNPLLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEAELPMQLVSQDDESGQKKLH
::::: :::::::::::::::::::::::::::::::::: :::::::::::::::::::
XP_011 SHRNPRLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEPELPMQLVSQDDESGQKKLH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 GLQAILVHEASGTTAITATATGYQESHLSSARTKQPHDPLVPLSASIELILVEDVRVSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLQAILVHEASGTTAITATATGYQESHLSSARTKQPHDPLVPLSASIELILVEDVRVSPE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 EVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTIMIHD
:::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMACAKDSRNSNQALVP
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 LCLVFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLK
XP_011 LVSSEACRRNFPGSIDVSSKSWLLQKQLQATVSEGCLLVAVAFSSCRAAAQR
970 980 990 1000 1010
>>XP_005265051 (OMIM: 607703) PREDICTED: nuclear pore me (1034 aa)
initn: 6109 init1: 6109 opt: 6109 Z-score: 6251.9 bits: 1169.3 E(85289): 0
Smith-Waterman score: 6109; 99.6% identity (99.8% similar) in 945 aa overlap (1-945:1-945)
10 20 30 40 50 60
pF1KA0 MAARGRGLLLLTLSVLLAAGPSAAAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWLSTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAARGRGLLLLTLSVLLAAGPSAAAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWLSTR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 PEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHDIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHDIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 IVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALRIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALRIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 TFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLIL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 ENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPTRPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_005 ENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPARPV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 AVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRWVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRWVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 ETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQTA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 IDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRAHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRAHG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 GSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSMEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSMEF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 APCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLPGRLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLPGRLPP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 GSEHCSGVRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLGSSK
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSEHCSGIRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLGSSK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 EMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVI
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 ALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVVPVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVVPVS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 SHRNPLLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEAELPMQLVSQDDESGQKKLH
::::: :::::::::::::::::::::::::::::::::: :::::::::::::::::::
XP_005 SHRNPRLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEPELPMQLVSQDDESGQKKLH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 GLQAILVHEASGTTAITATATGYQESHLSSARTKQPHDPLVPLSASIELILVEDVRVSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLQAILVHEASGTTAITATATGYQESHLSSARTKQPHDPLVPLSASIELILVEDVRVSPE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 EVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTIMIHD
:::::::::::::::::::::::::::::::::::::::::::::
XP_005 EVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMRLMLVSSCLAKRMFS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 LCLVFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLK
XP_005 QRRASRRGRESHCSCSSQRQTLGWQDALSSWGHACGWRTLEEARSLRPQAASPKHSYPLI
970 980 990 1000 1010 1020
>>XP_016861509 (OMIM: 607703) PREDICTED: nuclear pore me (992 aa)
initn: 6071 init1: 6071 opt: 6072 Z-score: 6214.3 bits: 1162.3 E(85289): 0
Smith-Waterman score: 6072; 99.0% identity (99.1% similar) in 954 aa overlap (934-1887:39-992)
910 920 930 940 950 960
pF1KA0 IYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTIMIHDLCL
.: : : ::::::::::::::::::
XP_016 EEVLEELTWMQEDCSEEGRWTWAWRMTWSQQVEAGERVQVFKVHPLLPGSSTIMIHDLCL
10 20 30 40 50 60
970 980 990 1000 1010 1020
pF1KA0 VFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLKLRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLKLRA
70 80 90 100 110 120
1030 1040 1050 1060 1070 1080
pF1KA0 ASPIITLVALDEALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPPFRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASPIITLVALDEALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPPFRL
130 140 150 160 170 180
1090 1100 1110 1120 1130 1140
pF1KA0 MPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNGTVSGLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNGTVSGLVQ
190 200 210 220 230 240
1150 1160 1170 1180 1190 1200
pF1KA0 AVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFSFGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFSFGN
250 260 270 280 290 300
1210 1220 1230 1240 1250 1260
pF1KA0 AVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVVVKAVDPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVVVKAVDPT
310 320 330 340 350 360
1270 1280 1290 1300 1310 1320
pF1KA0 SGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAASLSYRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAASLSYRVL
370 380 390 400 410 420
1330 1340 1350 1360 1370 1380
pF1KA0 DGPEKVPVVHVDEKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSYLRVSMSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGPEKVPVVHVDEKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSYLRVSMSP
430 440 450 460 470 480
1390 1400 1410 1420 1430 1440
pF1KA0 VLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIGKGPTNNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIGKGPTNNT
490 500 510 520 530 540
1450 1460 1470 1480 1490 1500
pF1KA0 CVVRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTSLEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CVVRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTSLEG
550 560 570 580 590 600
1510 1520 1530 1540 1550 1560
pF1KA0 LSGTWSSSANSILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQRIMARHLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSGTWSSSANSILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQRIMARHLH
610 620 630 640 650 660
1570 1580 1590 1600 1610 1620
pF1KA0 PIQTSFQEATASKVIVAVGDRSSNLRGECTPTQREVIQALHPETLISCQSQFKPAVFDFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PIQTSFQEATASKVIVAVGDRSSNLRGECTPTQREVIQALHPETLISCQSQFKPAVFDFP
670 680 690 700 710 720
1630 1640 1650 1660 1670 1680
pF1KA0 SQDVFTVEPQFDTALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASLSSSHFSTEQVGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQDVFTVEPQFDTALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASLSSSHFSTEQVGA
730 740 750 760 770 780
1690 1700 1710 1720 1730 1740
pF1KA0 EVPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFAKEKSFGWPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFAKEKSFGWPS
790 800 810 820 830 840
1750 1760 1770 1780 1790 1800
pF1KA0 FITYTVGVSDPAAGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGPYGASLFQHF
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FITYTVGVLDPAAGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGPYGASLFQHF
850 860 870 880 890 900
1810 1820 1830 1840 1850 1860
pF1KA0 LDSYQVMFFTLFALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYFAASSPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LDSYQVMFFTLFALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYFAASSPTS
910 920 930 940 950 960
1870 1880
pF1KA0 PNALPPARKASPPSGLWSPAYASH
::::::::::::::::::::::::
XP_016 PNALPPARKASPPSGLWSPAYASH
970 980 990
>>XP_016861507 (OMIM: 607703) PREDICTED: nuclear pore me (1015 aa)
initn: 6071 init1: 6071 opt: 6072 Z-score: 6214.1 bits: 1162.3 E(85289): 0
Smith-Waterman score: 6072; 99.0% identity (99.1% similar) in 954 aa overlap (934-1887:62-1015)
910 920 930 940 950 960
pF1KA0 IYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTIMIHDLCL
.: : : ::::::::::::::::::
XP_016 EEVLEELTWMQEDCSEEGRWTWAWRMTWSQQVEAGERVQVFKVHPLLPGSSTIMIHDLCL
40 50 60 70 80 90
970 980 990 1000 1010 1020
pF1KA0 VFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLKLRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLKLRA
100 110 120 130 140 150
1030 1040 1050 1060 1070 1080
pF1KA0 ASPIITLVALDEALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPPFRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASPIITLVALDEALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPPFRL
160 170 180 190 200 210
1090 1100 1110 1120 1130 1140
pF1KA0 MPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNGTVSGLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNGTVSGLVQ
220 230 240 250 260 270
1150 1160 1170 1180 1190 1200
pF1KA0 AVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFSFGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFSFGN
280 290 300 310 320 330
1210 1220 1230 1240 1250 1260
pF1KA0 AVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVVVKAVDPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVVVKAVDPT
340 350 360 370 380 390
1270 1280 1290 1300 1310 1320
pF1KA0 SGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAASLSYRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAASLSYRVL
400 410 420 430 440 450
1330 1340 1350 1360 1370 1380
pF1KA0 DGPEKVPVVHVDEKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSYLRVSMSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGPEKVPVVHVDEKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSYLRVSMSP
460 470 480 490 500 510
1390 1400 1410 1420 1430 1440
pF1KA0 VLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIGKGPTNNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIGKGPTNNT
520 530 540 550 560 570
1450 1460 1470 1480 1490 1500
pF1KA0 CVVRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTSLEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CVVRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTSLEG
580 590 600 610 620 630
1510 1520 1530 1540 1550 1560
pF1KA0 LSGTWSSSANSILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQRIMARHLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSGTWSSSANSILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQRIMARHLH
640 650 660 670 680 690
1570 1580 1590 1600 1610 1620
pF1KA0 PIQTSFQEATASKVIVAVGDRSSNLRGECTPTQREVIQALHPETLISCQSQFKPAVFDFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PIQTSFQEATASKVIVAVGDRSSNLRGECTPTQREVIQALHPETLISCQSQFKPAVFDFP
700 710 720 730 740 750
1630 1640 1650 1660 1670 1680
pF1KA0 SQDVFTVEPQFDTALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASLSSSHFSTEQVGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQDVFTVEPQFDTALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASLSSSHFSTEQVGA
760 770 780 790 800 810
1690 1700 1710 1720 1730 1740
pF1KA0 EVPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFAKEKSFGWPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFAKEKSFGWPS
820 830 840 850 860 870
1750 1760 1770 1780 1790 1800
pF1KA0 FITYTVGVSDPAAGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGPYGASLFQHF
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FITYTVGVLDPAAGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGPYGASLFQHF
880 890 900 910 920 930
1810 1820 1830 1840 1850 1860
pF1KA0 LDSYQVMFFTLFALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYFAASSPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LDSYQVMFFTLFALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYFAASSPTS
940 950 960 970 980 990
1870 1880
pF1KA0 PNALPPARKASPPSGLWSPAYASH
::::::::::::::::::::::::
XP_016 PNALPPARKASPPSGLWSPAYASH
1000 1010
>>XP_016861508 (OMIM: 607703) PREDICTED: nuclear pore me (1004 aa)
initn: 6071 init1: 6071 opt: 6071 Z-score: 6213.2 bits: 1162.1 E(85289): 0
Smith-Waterman score: 6071; 99.9% identity (99.9% similar) in 942 aa overlap (946-1887:63-1004)
920 930 940 950 960 970
pF1KA0 IREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTIMIHDLCLVFPAPAKAVVYV
::::::::::::::::::::::::::::::
XP_016 EVLEELTWMQEDCSEEGRWTWAWRMTWSQQVHPLLPGSSTIMIHDLCLVFPAPAKAVVYV
40 50 60 70 80 90
980 990 1000 1010 1020 1030
pF1KA0 SDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLKLRAASPIITLVALDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLKLRAASPIITLVALDE
100 110 120 130 140 150
1040 1050 1060 1070 1080 1090
pF1KA0 ALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPPFRLMPRKVTLLIGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPPFRLMPRKVTLLIGAT
160 170 180 190 200 210
1100 1110 1120 1130 1140 1150
pF1KA0 MQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNGTVSGLVQAVDAETGKVVII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNGTVSGLVQAVDAETGKVVII
220 230 240 250 260 270
1160 1170 1180 1190 1200 1210
pF1KA0 SQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFSFGNAVPGLTFHWSVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFSFGNAVPGLTFHWSVT
280 290 300 310 320 330
1220 1230 1240 1250 1260 1270
pF1KA0 KRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVVVKAVDPTSGQLYGLARELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVVVKAVDPTSGQLYGLARELS
340 350 360 370 380 390
1280 1290 1300 1310 1320 1330
pF1KA0 DEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAASLSYRVLDGPEKVPVVHVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAASLSYRVLDGPEKVPVVHVD
400 410 420 430 440 450
1340 1350 1360 1370 1380 1390
pF1KA0 EKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSYLRVSMSPVLHTQNKEALVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSYLRVSMSPVLHTQNKEALVA
460 470 480 490 500 510
1400 1410 1420 1430 1440 1450
pF1KA0 VPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIGKGPTNNTCVVRTVSVGLTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIGKGPTNNTCVVRTVSVGLTL
520 530 540 550 560 570
1460 1470 1480 1490 1500 1510
pF1KA0 LRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTSLEGLSGTWSSSANSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTSLEGLSGTWSSSANSI
580 590 600 610 620 630
1520 1530 1540 1550 1560 1570
pF1KA0 LHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQRIMARHLHPIQTSFQEATAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQRIMARHLHPIQTSFQEATAS
640 650 660 670 680 690
1580 1590 1600 1610 1620 1630
pF1KA0 KVIVAVGDRSSNLRGECTPTQREVIQALHPETLISCQSQFKPAVFDFPSQDVFTVEPQFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KVIVAVGDRSSNLRGECTPTQREVIQALHPETLISCQSQFKPAVFDFPSQDVFTVEPQFD
700 710 720 730 740 750
1640 1650 1660 1670 1680 1690
pF1KA0 TALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASLSSSHFSTEQVGAEVPFSPGLFADQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASLSSSHFSTEQVGAEVPFSPGLFADQ
760 770 780 790 800 810
1700 1710 1720 1730 1740 1750
pF1KA0 AEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFAKEKSFGWPSFITYTVGVSDPA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
XP_016 AEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFAKEKSFGWPSFITYTVGVLDPA
820 830 840 850 860 870
1760 1770 1780 1790 1800 1810
pF1KA0 AGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGPYGASLFQHFLDSYQVMFFTLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGPYGASLFQHFLDSYQVMFFTLF
880 890 900 910 920 930
1820 1830 1840 1850 1860 1870
pF1KA0 ALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYFAASSPTSPNALPPARKASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYFAASSPTSPNALPPARKASP
940 950 960 970 980 990
1880
pF1KA0 PSGLWSPAYASH
::::::::::::
XP_016 PSGLWSPAYASH
1000
1887 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:56:14 2016 done: Wed Nov 2 19:56:17 2016
Total Scan time: 18.280 Total Display time: 0.370
Function used was FASTA [36.3.4 Apr, 2011]