FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0930, 413 aa
  1>>>pF1KA0930 413 - 413 aa - 413 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3319+/-0.000818; mu= 12.4404+/- 0.049
 mean_var=85.7707+/-16.771, 0's: 0 Z-trim(109.1): 9  B-trim: 0 in 0/52
 Lambda= 0.138486
 statistics sampled from 10633 (10638) to 10633 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.327), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS33666.1 KIAA0930 gene_id:23313|Hs108|chr22     ( 409) 2587 526.6 1.7e-149
CCDS33665.1 KIAA0930 gene_id:23313|Hs108|chr22     ( 404) 2583 525.8 2.9e-149


>>CCDS33666.1 KIAA0930 gene_id:23313|Hs108|chr22          (409 aa)
 initn: 2587 init1: 2587 opt: 2587  Z-score: 2797.5  bits: 526.6 E(32554): 1.7e-149
Smith-Waterman score: 2587; 99.7% identity (99.7% similar) in 385 aa overlap (29-413:25-409)

               10        20        30        40        50        60
pF1KA0 MWGYGRSLAKAMLQGPGWPSFLTPVWPPSAGCFKDDRIVFWTWMFSTYFMEKWAPRQDDM
                                   : ::::::::::::::::::::::::::::::
CCDS33     MGSQAAAEWRNWASWEVSSSLSGCSMGCFKDDRIVFWTWMFSTYFMEKWAPRQDDM
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KA0 LFYVRRKLAYSGSESGADGRKAAEPEVEVEVYRRDSKKLPGLGDPDIDWEESVCLNLILQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LFYVRRKLAYSGSESGADGRKAAEPEVEVEVYRRDSKKLPGLGDPDIDWEESVCLNLILQ
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KA0 KLDYMVTCAVCTRADGGDIHIHKKKSQQVFASPSKHPMDSKGEESKISYPNIFFMIDSFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KLDYMVTCAVCTRADGGDIHIHKKKSQQVFASPSKHPMDSKGEESKISYPNIFFMIDSFE
        120       130       140       150       160       170      

              190       200       210       220       230       240
pF1KA0 EVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSIRYEALKKVYDNRVSVAARMAQKMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSIRYEALKKVYDNRVSVAARMAQKMS
        180       190       200       210       220       230      

              250       260       270       280       290       300
pF1KA0 FGFYKYSNMEFVRMKGPQGKGHAEMAVSRVSTGDTSPCGTEEDSSPASPMHERVTSFSTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FGFYKYSNMEFVRMKGPQGKGHAEMAVSRVSTGDTSPCGTEEDSSPASPMHERVTSFSTP
        240       250       260       270       280       290      

              310       320       330       340       350       360
pF1KA0 PTPERNNRPAFFSPSLKRKVPRNRIAEMKKSHSANDSEEFFREDDGGADLHNATNLRSRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PTPERNNRPAFFSPSLKRKVPRNRIAEMKKSHSANDSEEFFREDDGGADLHNATNLRSRS
        300       310       320       330       340       350      

              370       380       390       400       410   
pF1KA0 LSGTGRSLVGSWLKLNRADGNFLLYAHLTYVTLPLHRILTDILEVRQKPILMT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LSGTGRSLVGSWLKLNRADGNFLLYAHLTYVTLPLHRILTDILEVRQKPILMT
        360       370       380       390       400         

>>CCDS33665.1 KIAA0930 gene_id:23313|Hs108|chr22          (404 aa)
 initn: 2583 init1: 2583 opt: 2583  Z-score: 2793.3  bits: 525.8 E(32554): 2.9e-149
Smith-Waterman score: 2583; 100.0% identity (100.0% similar) in 383 aa overlap (31-413:22-404)

               10        20        30        40        50        60
pF1KA0 MWGYGRSLAKAMLQGPGWPSFLTPVWPPSAGCFKDDRIVFWTWMFSTYFMEKWAPRQDDM
                                     ::::::::::::::::::::::::::::::
CCDS33          MLRAIAEERGRLSLRREVCGLGCFKDDRIVFWTWMFSTYFMEKWAPRQDDM
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KA0 LFYVRRKLAYSGSESGADGRKAAEPEVEVEVYRRDSKKLPGLGDPDIDWEESVCLNLILQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LFYVRRKLAYSGSESGADGRKAAEPEVEVEVYRRDSKKLPGLGDPDIDWEESVCLNLILQ
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KA0 KLDYMVTCAVCTRADGGDIHIHKKKSQQVFASPSKHPMDSKGEESKISYPNIFFMIDSFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KLDYMVTCAVCTRADGGDIHIHKKKSQQVFASPSKHPMDSKGEESKISYPNIFFMIDSFE
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KA0 EVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSIRYEALKKVYDNRVSVAARMAQKMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSIRYEALKKVYDNRVSVAARMAQKMS
             180       190       200       210       220       230 

              250       260       270       280       290       300
pF1KA0 FGFYKYSNMEFVRMKGPQGKGHAEMAVSRVSTGDTSPCGTEEDSSPASPMHERVTSFSTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FGFYKYSNMEFVRMKGPQGKGHAEMAVSRVSTGDTSPCGTEEDSSPASPMHERVTSFSTP
             240       250       260       270       280       290 

              310       320       330       340       350       360
pF1KA0 PTPERNNRPAFFSPSLKRKVPRNRIAEMKKSHSANDSEEFFREDDGGADLHNATNLRSRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PTPERNNRPAFFSPSLKRKVPRNRIAEMKKSHSANDSEEFFREDDGGADLHNATNLRSRS
             300       310       320       330       340       350 

              370       380       390       400       410   
pF1KA0 LSGTGRSLVGSWLKLNRADGNFLLYAHLTYVTLPLHRILTDILEVRQKPILMT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LSGTGRSLVGSWLKLNRADGNFLLYAHLTYVTLPLHRILTDILEVRQKPILMT
             360       370       380       390       400    




413 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:01:57 2016 done: Wed Nov  2 20:01:57 2016
 Total Scan time:  1.870 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]