Result of FASTA (ccds) for
pF1KA0950
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0950, 316 aa
1>>>pF1KA0950 316 - 316 aa - 316 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9971+/-0.000795; mu= 9.6711+/- 0.048
mean_var=120.0480+/-24.567, 0's: 0 Z-trim(112.0): 8 B-trim: 0 in 0/51
Lambda= 0.117057
statistics sampled from 12826 (12832) to 12826 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.394), width: 16
Scan time: 2.620
The best scores are: opt bits E(32554)
CCDS8791.1 FAIM2 gene_id:23017|Hs108|chr12 ( 316) 2116 367.7 6.7e-102
CCDS2412.1 TMBIM1 gene_id:64114|Hs108|chr2 ( 311) 984 176.5 2.3e-44
CCDS34961.1 GRINA gene_id:2907|Hs108|chr8 ( 371) 835 151.4 1e-36
CCDS41805.1 TMBIM4 gene_id:51643|Hs108|chr12 ( 238) 375 73.6 1.7e-13
CCDS61187.1 TMBIM4 gene_id:51643|Hs108|chr12 ( 285) 364 71.8 7.2e-13
>>CCDS8791.1 FAIM2 gene_id:23017|Hs108|chr12 (316 aa)
initn: 2116 init1: 2116 opt: 2116 Z-score: 1942.9 bits: 367.7 E(32554): 6.7e-102
Smith-Waterman score: 2116; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)
10 20 30 40 50 60
pF1KA0 MTQGKLSVANKAPGTEGQQQVHGEKKEAPAVPSAPPSYEEATSGEGMKAGAFPPAPTAVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MTQGKLSVANKAPGTEGQQQVHGEKKEAPAVPSAPPSYEEATSGEGMKAGAFPPAPTAVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LHPSWAYVDPSSSSSYDNGFPTGDHELFTTFSWDDQKVRRVFVRKVYTILLIQLLVTLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LHPSWAYVDPSSSSSYDNGFPTGDHELFTTFSWDDQKVRRVFVRKVYTILLIQLLVTLAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 VALFTFCDPVKDYVQANPGWYWASYAVFFATYLTLACCSGPRRHFPWNLILLTVFTLSMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 VALFTFCDPVKDYVQANPGWYWASYAVFFATYLTLACCSGPRRHFPWNLILLTVFTLSMA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YLTGMLSSYYNTTSVLLCLGITALVCLSVTVFSFQTKFDFTSCQGVLFVLLMTLFFSGLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 YLTGMLSSYYNTTSVLLCLGITALVCLSVTVFSFQTKFDFTSCQGVLFVLLMTLFFSGLI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 LAILLPFQYVPWLHAVYAALGAGVFTLFLALDTQLLMGNRRHSLSPEEYIFGALNIYLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LAILLPFQYVPWLHAVYAALGAGVFTLFLALDTQLLMGNRRHSLSPEEYIFGALNIYLDI
250 260 270 280 290 300
310
pF1KA0 IYIFTFFLQLFGTNRE
::::::::::::::::
CCDS87 IYIFTFFLQLFGTNRE
310
>>CCDS2412.1 TMBIM1 gene_id:64114|Hs108|chr2 (311 aa)
initn: 1023 init1: 935 opt: 984 Z-score: 909.9 bits: 176.5 E(32554): 2.3e-44
Smith-Waterman score: 987; 52.0% identity (74.0% similar) in 300 aa overlap (13-312:23-308)
10 20 30 40 50
pF1KA0 MTQGKLSVANKAPGTEGQQQVHGEKKEAPAVPSAPPSYEEATSGEGMKAG
:: :: .: :. : :.: . : : ::
CCDS24 MSNPSAPPPYEDRNPLYPGPPPPGGYGQPSV------LPGGYPAYPGYPQP--GYGHPAG
10 20 30 40 50
60 70 80 90 100 110
pF1KA0 AFPPAPTAVPLHPSWAYVDPSSSSSYDNGFPTGDHELFTTFSWDDQKVRRVFVRKVYTIL
: : : :: :. .:: : . . : :::.:::..:.::::.:.
CCDS24 YPQPMP---PTHPMPMNYGPGH--GYD-GEERAVSDSFGPGEWDDRKVRHTFIRKVYSII
60 70 80 90 100
120 130 140 150 160 170
pF1KA0 LIQLLVTLAVVALFTFCDPVKDYVQANPGWYWASYAVFFATYLTLACCSGPRRHFPWNLI
.:::.:.:..:.::: .::. .:. : . :..::::: .::: ::::.::::.::::.:
CCDS24 SVQLLITVAIIAIFTFVEPVSAFVRRNVAVYYVSYAVFVVTYLILACCQGPRRRFPWNII
110 120 130 140 150 160
180 190 200 210 220 230
pF1KA0 LLTVFTLSMAYLTGMLSSYYNTTSVLLCLGITALVCLSVTVFSFQTKFDFTSCQGVLFVL
:::.::..:...:: .::.:.: .:.. . :::.: .:::.: :::: ::::: :.. ::
CCDS24 LLTLFTFAMGFMTGTISSMYQTKAVIIAMIITAVVSISVTIFCFQTKVDFTSCTGLFCVL
170 180 190 200 210 220
240 250 260 270 280 290
pF1KA0 LMTLFFSGLILAILLPFQYVPWLHAVYAALGAGVFTLFLALDTQLLMGNRRHSLSPEEYI
..:. .:.. .:.: :::: ::: .:::::: :::::: ::::..:::.:..:::.::
CCDS24 GIVLLVTGIVTSIVLYFQYVYWLHMLYAALGAICFTLFLAYDTQLVLGNRKHTISPEDYI
230 240 250 260 270 280
300 310
pF1KA0 FGALNIYLDIIYIFTFFLQLFGTNRE
:::.:: :::::::: :::.:
CCDS24 TGALQIYTDIIYIFTFVLQLMGDRN
290 300 310
>>CCDS34961.1 GRINA gene_id:2907|Hs108|chr8 (371 aa)
initn: 813 init1: 546 opt: 835 Z-score: 772.7 bits: 151.4 E(32554): 1e-36
Smith-Waterman score: 835; 45.1% identity (75.3% similar) in 288 aa overlap (32-316:90-371)
10 20 30 40 50 60
pF1KA0 TQGKLSVANKAPGTEGQQQVHGEKKEAPAVPSAPPSYEEATSGEG-MKAGAFPPAPTAVP
:..: : .. .: . . ::: : . :
CCDS34 GPSPYPQGGYPQGPYPQGGYPQGPYPQEGYPQGP--YPQGGYPQGPYPQSPFPPNPYGQP
60 70 80 90 100 110
70 80 90 100 110
pF1KA0 -LHPSWAYVDPSSSSSYDNGFPTG-DHELFTTFSWDDQKVRRVFVRKVYTILLIQLLVTL
. :. .:. .. ..: :. :.. : . .:::...:..:.:::. .: .:: :::
CCDS34 QVFPGQDPDSPQHGNYQEEGPPSYYDNQDFPATNWDDKSIRQAFIRKVFLVLTLQLSVTL
120 130 140 150 160 170
120 130 140 150 160 170
pF1KA0 AVVALFTFCDPVKDYVQANPGWYWASYAVFFATYLTLACCSGPRRHFPWNLILLTVFTLS
..:..::: :: .:. : :..:::::: . ..:.::. ::. ::::. :.:.: :
CCDS34 STVSVFTFVAEVKGFVRENVWTYYVSYAVFFISLIVLSCCGDFRRKHPWNLVALSVLTAS
180 190 200 210 220 230
180 190 200 210 220 230
pF1KA0 MAYLTGMLSSYYNTTSVLLCLGITALVCLSVTVFSFQTKFDFTSCQGVLFVLLMTLFFSG
..:..::..:.::: .:.. .:::. ::..:..::.::..:::::.:::.: ...::
CCDS34 LSYMVGMIASFYNTEAVIMAVGITTAVCFTVVIFSMQTRYDFTSCMGVLLVSMVVLF---
240 250 260 270 280 290
240 250 260 270 280 290
pF1KA0 LILAILLPFQYVPWLHAVYAALGAGVFTLFLALDTQLLMGNRRHSLSPEEYIFGALNIYL
:.::: : :. :::.::: .:: :::.:::::.::.. :::::::.:.:::.:
CCDS34 -IFAILCIFIRNRILEIVYASLGALLFTCFLAVDTQLLLGNKQLSLSPEEYVFAALNLYT
300 310 320 330 340 350
300 310
pF1KA0 DIIYIFTFFLQLFGTNRE
::: :: ..: ..: .:
CCDS34 DIINIFLYILTIIGRAKE
360 370
>>CCDS41805.1 TMBIM4 gene_id:51643|Hs108|chr12 (238 aa)
initn: 342 init1: 135 opt: 375 Z-score: 355.7 bits: 73.6 E(32554): 1.7e-13
Smith-Waterman score: 375; 33.1% identity (62.9% similar) in 248 aa overlap (69-311:5-232)
40 50 60 70 80 90
pF1KA0 EEATSGEGMKAGAFPPAPTAVPLHPSWAYVDPS-SSSSYDNGFPTGDHELFTTFSWDDQK
:: :: .. : :. .: .
CCDS41 MADPDPRYPRSSIEDDFNYGSSVASATV-----H
10 20
100 110 120 130 140 150
pF1KA0 VRRVFVRKVYTILLIQLLVTLAVVALFTFCDPVKDYVQANPG----WYWASYAVFFATYL
.: .:.::::.:: .:.:.: .. ..: . . :. .:. .:. . .: ...:: :
CCDS41 IRMAFLRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESPALILLFALGSLGLIFALIL
30 40 50 60 70 80
160 170 180 190 200 210
pF1KA0 TLACCSGPRRHFPWNLILLTVFTLSMAYLTGMLSSYYNTTSVLLCLGITALVCLSVTVFS
. :...: :: :: ::: : .... ..:.. .: . .:. : ...::..
CCDS41 N-------RHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYIILQAFILTTTVFFGLTVYT
90 100 110 120 130 140
220 230 240 250 260 270
pF1KA0 FQTKFDFTSCQGVLFVLLMTLFFSGLILAILLPFQYVPWLHAVYAALGAGVFTLFLALDT
.:.: ::.. . ::.:: : .::. : : : .. : :: :: .: :. ::
CCDS41 LQSKKDFSKFGAGLFALLWILCLSGF----LKFFFYSEIMELVLAAAGALLFCGFIIYDT
150 160 170 180 190
280 290 300 310
pF1KA0 QLLMGNRRHSLSPEEYIFGALNIYLDIIYIFTFFLQLFGTNRE
. :: :.::::::...:...::::: .: .:...
CCDS41 HSLM----HKLSPEEYVLAAISLYLDIINLFLHLLRFLEAVNKK
200 210 220 230
>>CCDS61187.1 TMBIM4 gene_id:51643|Hs108|chr12 (285 aa)
initn: 362 init1: 135 opt: 364 Z-score: 344.6 bits: 71.8 E(32554): 7.2e-13
Smith-Waterman score: 364; 34.6% identity (65.9% similar) in 214 aa overlap (102-311:81-279)
80 90 100 110 120 130
pF1KA0 SSSSYDNGFPTGDHELFTTFSWDDQKVRRVFVRKVYTILLIQLLVTLAVVALFTFCDPVK
:.::::.:: .:.:.: .. ..: . . :.
CCDS61 PSATLNIIRFFHLRQSGRSGMVNIFYKGPTFLRKVYSILSLQVLLTTVTSTVFLYFESVR
60 70 80 90 100 110
140 150 160 170 180
pF1KA0 DYVQANPG----WYWASYAVFFATYLTLACCSGPRRHFPWNLILLTVFTLSMAYLTGMLS
.:. .:. . .: ...:: :. :...: :: :: ::: : ....
CCDS61 TFVHESPALILLFALGSLGLIFALILN-------RHKYPLNLYLLFGFTLLEALTVAVVV
120 130 140 150 160
190 200 210 220 230 240
pF1KA0 SYYNTTSVLLCLGITALVCLSVTVFSFQTKFDFTSCQGVLFVLLMTLFFSGLILAILLPF
..:.. .: . .:. : ...::...:.: ::.. . ::.:: : .::. : :
CCDS61 TFYDVYIILQAFILTTTVFFGLTVYTLQSKKDFSKFGAGLFALLWILCLSGF----LKFF
170 180 190 200 210
250 260 270 280 290 300
pF1KA0 QYVPWLHAVYAALGAGVFTLFLALDTQLLMGNRRHSLSPEEYIFGALNIYLDIIYIFTFF
: .. : :: :: .: :. ::. :: :.::::::...:...::::: .: .
CCDS61 FYSEIMELVLAAAGALLFCGFIIYDTHSLM----HKLSPEEYVLAAISLYLDIINLFLHL
220 230 240 250 260 270
310
pF1KA0 LQLFGTNRE
:...
CCDS61 LRFLEAVNKK
280
316 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:12:00 2016 done: Fri Nov 4 01:12:00 2016
Total Scan time: 2.620 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]