FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0982, 494 aa
  1>>>pF1KA0982 494 - 494 aa - 494 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9560+/-0.00122; mu= 4.4820+/- 0.072
 mean_var=149.1413+/-30.863, 0's: 0 Z-trim(105.7): 130  B-trim: 0 in 0/51
 Lambda= 0.105021
 statistics sampled from 8448 (8590) to 8448 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS7057.1 WDR37 gene_id:22884|Hs108|chr10         ( 494) 3254 505.5 5.3e-143


>>CCDS7057.1 WDR37 gene_id:22884|Hs108|chr10              (494 aa)
 initn: 3254 init1: 3254 opt: 3254  Z-score: 2680.8  bits: 505.5 E(32554): 5.3e-143
Smith-Waterman score: 3254; 99.8% identity (99.8% similar) in 494 aa overlap (1-494:1-494)

               10        20        30        40        50        60
pF1KA0 MPTESASCSTARQTKQKRKSHSLSIRRTNSSEQERTGLPRDMLEGQDSKLPSSVRSTLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MPTESASCSTARQTKQKRKSHSLSIRRTNSSEQERTGLPRDMLEGQDSKLPSSVRSTLLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LFGQIEREFENLYIENLELRREIDTLNERLAAEGQAIDGAELSKGQLKTKASHSTSQLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LFGQIEREFENLYIENLELRREIDTLNERLAAEGQAIDGAELSKGQLKTKASHSTSQLSQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 KLKTTYKASTSKIVSSFKTTTSRAACQLVKEYIGHRDGIWDVSVAKTQPVVLGTASADHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 KLKTTYKASTSKIVSSFKTTTSRAACQLVKEYIGHRDGIWDVSVAKTQPVVLGTASADHT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 ALLWSIETGKCLVKYAGHVGSVNSIKFHPSEQLALTASGDQTAHIWRYAVQLPTPQPVAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 ALLWSIETGKCLVKYAGHVGSVNSIKFHPSEQLALTASGDQTAHIWRYAVQLPTPQPVAD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 TSISGEDEVECSDKDEPDLDGDVSSDSPTIRVPLTSLKSHQGVVIASDWLVGGKQAVTAS
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
CCDS70 TSISGEDEVECSDKDEPDLDGDVSSDCPTIRVPLTSLKSHQGVVIASDWLVGGKQAVTAS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 WDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 WDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 NVFQGHTDTVTSAVFTVGDNVVSGSDDRTVKVWDLKNMRSPIATIRTDSAINRINVCVGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 NVFQGHTDTVTSAVFTVGDNVVSGSDDRTVKVWDLKNMRSPIATIRTDSAINRINVCVGQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 KIIALPHDNRQVRLFDMSGVRLARLPRSSRQGHRRMVCCSAWSEDHPVCNLFTCGFDRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 KIIALPHDNRQVRLFDMSGVRLARLPRSSRQGHRRMVCCSAWSEDHPVCNLFTCGFDRQA
              430       440       450       460       470       480

              490    
pF1KA0 IGWNINIPALLQEK
       ::::::::::::::
CCDS70 IGWNINIPALLQEK
              490    




494 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:11:17 2016 done: Wed Nov  2 20:11:17 2016
 Total Scan time:  2.650 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]