Result of FASTA (ccds) for
pF1KA1128
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1128, 1047 aa
1>>>pF1KA1128 1047 - 1047 aa - 1047 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8925+/-0.00108; mu= 5.1924+/- 0.065
mean_var=162.7091+/-33.528, 0's: 0 Z-trim(109.6): 23 B-trim: 300 in 1/49
Lambda= 0.100547
statistics sampled from 10958 (10973) to 10958 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.337), width: 16
Scan time: 3.900
The best scores are: opt bits E(32554)
CCDS60582.1 CCSER2 gene_id:54462|Hs108|chr10 (1047) 7051 1035.5 0
CCDS31235.1 CCSER2 gene_id:54462|Hs108|chr10 ( 834) 5258 775.4 0
CCDS73159.1 CCSER2 gene_id:54462|Hs108|chr10 ( 567) 3551 527.8 2.6e-149
CCDS60583.1 CCSER2 gene_id:54462|Hs108|chr10 ( 261) 1464 224.9 1.8e-58
>>CCDS60582.1 CCSER2 gene_id:54462|Hs108|chr10 (1047 aa)
initn: 7051 init1: 7051 opt: 7051 Z-score: 5533.6 bits: 1035.5 E(32554): 0
Smith-Waterman score: 7051; 100.0% identity (100.0% similar) in 1047 aa overlap (1-1047:1-1047)
10 20 30 40 50 60
pF1KA1 MEEKTQIKTFLGSKLPKYGTKSVRSTLQPMPNGTPVNLLGTSKNSNVKSYIKNNGSDCPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MEEKTQIKTFLGSKLPKYGTKSVRSTLQPMPNGTPVNLLGTSKNSNVKSYIKNNGSDCPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SHSFNWRKANKYQLCAQGVEEPNNTQNSHDKIIDPEKRVPTQGMFDKNGIKGGLKSVSLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SHSFNWRKANKYQLCAQGVEEPNNTQNSHDKIIDPEKRVPTQGMFDKNGIKGGLKSVSLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 TSKLAKPSTMFVSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSINTPKSQLNGFYGNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TSKLAKPSTMFVSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSINTPKSQLNGFYGNR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 SAGSMQRPRANSCATRSSSGESLAQSPDSSKSINCEKMVRSQSFSHSIQNSFLPPSSITR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SAGSMQRPRANSCATRSSSGESLAQSPDSSKSINCEKMVRSQSFSHSIQNSFLPPSSITR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 SHSFNRAVDLTKPYQNQQLSIRVPLRSSMLTRNSRQPEVLNGNEHLGYGFNRPYAAGGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SHSFNRAVDLTKPYQNQQLSIRVPLRSSMLTRNSRQPEVLNGNEHLGYGFNRPYAAGGKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 LALPNGPGVTSTLGYRMVHPSLLKSSRSPFSGTMTVDGNKNSPADTCVEEDATVLAKDRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LALPNGPGVTSTLGYRMVHPSLLKSSRSPFSGTMTVDGNKNSPADTCVEEDATVLAKDRA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 ANKDQELIENESYRTKNNQTMKHDAKMRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ANKDQELIENESYRTKNNQTMKHDAKMRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFID
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 IEDSNRTRITPEEMSLKEEKHENGPPQDMFDSPKENEKAFSKTDEWIDISVSDRSECTKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IEDSNRTRITPEEMSLKEEKHENGPPQDMFDSPKENEKAFSKTDEWIDISVSDRSECTKH
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 TSGNNLVSPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGNVHPVGSYESSEMNSIDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TSGNNLVSPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGNVHPVGSYESSEMNSIDI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 LNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRPDRNVRQPQEGFWKRPPQRWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRPDRNVRQPQEGFWKRPPQRWS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 GQEHYHLSHPDHYHHHGKSDLSRGSPYRESPLGHFESYGGMPFFQAQKMFVDVPENTVIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GQEHYHLSHPDHYHHHGKSDLSRGSPYRESPLGHFESYGGMPFFQAQKMFVDVPENTVIL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 DEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDIQLSLPSSPEPEDGDKVYKNEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 DEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDIQLSLPSSPEPEDGDKVYKNEDL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 LNEIKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEKCTYADKYTQTPWRRIPPQVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LNEIKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEKCTYADKYTQTPWRRIPPQVLQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 PSSSLPRPTDHTQGKLIKPQRIEARSECSIQDMHQGGAHPEESFTHVLHQESNYGLEEQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PSSSLPRPTDHTQGKLIKPQRIEARSECSIQDMHQGGAHPEESFTHVLHQESNYGLEEQP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 FSSGPQLTMDVAKSTPSEANLNITVNAQEPYHLANNQISDMQFIPTSLQTPPESSTVDQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 FSSGPQLTMDVAKSTPSEANLNITVNAQEPYHLANNQISDMQFIPTSLQTPPESSTVDQA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 KRVGRNQSPPVGYMSQPKSLQLLKPSILSSLVPPPVSESSPSRTPTCKKSPIITTCNSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KRVGRNQSPPVGYMSQPKSLQLLKPSILSSLVPPPVSESSPSRTPTCKKSPIITTCNSAK
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 LQPTSSQTNLANNQNLKASKLRPPSGSFKQKQTNSPQLEPQSFQAKTSIPRPLTQRKEIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LQPTSSQTNLANNQNLKASKLRPPSGSFKQKQTNSPQLEPQSFQAKTSIPRPLTQRKEIM
970 980 990 1000 1010 1020
1030 1040
pF1KA1 QNPNGNLHSGDCLASNRYSRLPKPKIH
:::::::::::::::::::::::::::
CCDS60 QNPNGNLHSGDCLASNRYSRLPKPKIH
1030 1040
>>CCDS31235.1 CCSER2 gene_id:54462|Hs108|chr10 (834 aa)
initn: 5272 init1: 5237 opt: 5258 Z-score: 4129.6 bits: 775.4 E(32554): 0
Smith-Waterman score: 5258; 95.6% identity (97.1% similar) in 821 aa overlap (1-820:1-821)
10 20 30 40 50 60
pF1KA1 MEEKTQIKTFLGSKLPKYGTKSVRSTLQPMPNGTPVNLLGTSKNSNVKSYIKNNGSDCPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MEEKTQIKTFLGSKLPKYGTKSVRSTLQPMPNGTPVNLLGTSKNSNVKSYIKNNGSDCPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SHSFNWRKANKYQLCAQGVEEPNNTQNSHDKIIDPEKRVPTQGMFDKNGIKGGLKSVSLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SHSFNWRKANKYQLCAQGVEEPNNTQNSHDKIIDPEKRVPTQGMFDKNGIKGGLKSVSLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 TSKLAKPSTMFVSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSINTPKSQLNGFYGNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TSKLAKPSTMFVSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSINTPKSQLNGFYGNR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 SAGSMQRPRANSCATRSSSGESLAQSPDSSKSINCEKMVRSQSFSHSIQNSFLPPSSITR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SAGSMQRPRANSCATRSSSGESLAQSPDSSKSINCEKMVRSQSFSHSIQNSFLPPSSITR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 SHSFNRAVDLTKPYQNQQLSIRVPLRSSMLTRNSRQPEVLNGNEHLGYGFNRPYAAGGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SHSFNRAVDLTKPYQNQQLSIRVPLRSSMLTRNSRQPEVLNGNEHLGYGFNRPYAAGGKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 LALPNGPGVTSTLGYRMVHPSLLKSSRSPFSGTMTVDGNKNSPADTCVEEDATVLAKDRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LALPNGPGVTSTLGYRMVHPSLLKSSRSPFSGTMTVDGNKNSPADTCVEEDATVLAKDRA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 ANKDQELIENESYRTKNNQTMKHDAKMRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ANKDQELIENESYRTKNNQTMKHDAKMRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFID
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 IEDSNRTRITPEEMSLKEEKHENGPPQDMFDSPKENEKAFSKTDEWIDISVSDRSECTKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IEDSNRTRITPEEMSLKEEKHENGPPQDMFDSPKENEKAFSKTDEWIDISVSDRSECTKH
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 TSGNNLVSPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGNVHPVGSYESSEMNSIDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TSGNNLVSPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGNVHPVGSYESSEMNSIDI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 LNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRPDRNVRQPQEGFWKRPPQRWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRPDRNVRQPQEGFWKRPPQRWS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 GQEHYHLSHPDHYHHHGKSDLSRGSPYRESPLGHFESYGGMPFFQAQKMFVDVPENTVIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GQEHYHLSHPDHYHHHGKSDLSRGSPYRESPLGHFESYGGMPFFQAQKMFVDVPENTVIL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 DEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDIQLSLPSSPEPEDGDKVYKNEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDIQLSLPSSPEPEDGDKVYKNEDL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 LNEIKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEKCTYADKYTQTPWRRIPPQVLQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LNEIKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEKCTYADKYTQTPWRRIPGGYSA
730 740 750 760 770 780
790 800 810 820 830
pF1KA1 PSSSLPRPTDHTQGKLIKPQRIEARSECSIQDMHQGG-AHPEESFTHVLHQESNYGLEEQ
:: : . . . . . :.: .. : ..:. : .::
CCDS31 PSFSPWQGSFQGIPRTVPPHRRQTSSTTAFQQPSQTHRSHPGKTNKATTYRGPQ
790 800 810 820 830
840 850 860 870 880 890
pF1KA1 PFSSGPQLTMDVAKSTPSEANLNITVNAQEPYHLANNQISDMQFIPTSLQTPPESSTVDQ
>>CCDS73159.1 CCSER2 gene_id:54462|Hs108|chr10 (567 aa)
initn: 3551 init1: 3551 opt: 3551 Z-score: 2794.1 bits: 527.8 E(32554): 2.6e-149
Smith-Waterman score: 3551; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)
10 20 30 40 50 60
pF1KA1 MEEKTQIKTFLGSKLPKYGTKSVRSTLQPMPNGTPVNLLGTSKNSNVKSYIKNNGSDCPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MEEKTQIKTFLGSKLPKYGTKSVRSTLQPMPNGTPVNLLGTSKNSNVKSYIKNNGSDCPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SHSFNWRKANKYQLCAQGVEEPNNTQNSHDKIIDPEKRVPTQGMFDKNGIKGGLKSVSLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SHSFNWRKANKYQLCAQGVEEPNNTQNSHDKIIDPEKRVPTQGMFDKNGIKGGLKSVSLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 TSKLAKPSTMFVSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSINTPKSQLNGFYGNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TSKLAKPSTMFVSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSINTPKSQLNGFYGNR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 SAGSMQRPRANSCATRSSSGESLAQSPDSSKSINCEKMVRSQSFSHSIQNSFLPPSSITR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SAGSMQRPRANSCATRSSSGESLAQSPDSSKSINCEKMVRSQSFSHSIQNSFLPPSSITR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 SHSFNRAVDLTKPYQNQQLSIRVPLRSSMLTRNSRQPEVLNGNEHLGYGFNRPYAAGGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SHSFNRAVDLTKPYQNQQLSIRVPLRSSMLTRNSRQPEVLNGNEHLGYGFNRPYAAGGKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 LALPNGPGVTSTLGYRMVHPSLLKSSRSPFSGTMTVDGNKNSPADTCVEEDATVLAKDRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LALPNGPGVTSTLGYRMVHPSLLKSSRSPFSGTMTVDGNKNSPADTCVEEDATVLAKDRA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 ANKDQELIENESYRTKNNQTMKHDAKMRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ANKDQELIENESYRTKNNQTMKHDAKMRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFID
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 IEDSNRTRITPEEMSLKEEKHENGPPQDMFDSPKENEKAFSKTDEWIDISVSDRSECTKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IEDSNRTRITPEEMSLKEEKHENGPPQDMFDSPKENEKAFSKTDEWIDISVSDRSECTKH
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 TSGNNLVSPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGNVHPVGSYESSEMNSIDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TSGNNLVSPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGNVHPVGSYESSEMNSIVC
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 LNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRPDRNVRQPQEGFWKRPPQRWS
CCDS73 MDLYTLGIFCLPYYRETCDMIDFVKNL
550 560
>>CCDS60583.1 CCSER2 gene_id:54462|Hs108|chr10 (261 aa)
initn: 1467 init1: 1443 opt: 1464 Z-score: 1163.3 bits: 224.9 E(32554): 1.8e-58
Smith-Waterman score: 1464; 85.5% identity (90.3% similar) in 248 aa overlap (574-820:1-248)
550 560 570 580 590 600
pF1KA1 LESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRPDRNVRQPQEGFWKRPPQRWSGQE
::::::::::::::::::::::::::::::
CCDS60 MNRFDRPDRNVRQPQEGFWKRPPQRWSGQE
10 20 30
610 620 630 640 650 660
pF1KA1 HYHLSHPDHYHHHGKSDLSRGSPYRESPLGHFESYGGMPFFQAQKMFVDVPENTVILDEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 HYHLSHPDHYHHHGKSDLSRGSPYRESPLGHFESYGGMPFFQAQKMFVDVPENTVILDEM
40 50 60 70 80 90
670 680 690 700 710 720
pF1KA1 TLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDIQLSLPSSPEPEDGDKVYKNEDLLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDIQLSLPSSPEPEDGDKVYKNEDLLNE
100 110 120 130 140 150
730 740 750 760 770 780
pF1KA1 IKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEKCTYADKYTQTPWRRIPPQVLQPSS
:::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS60 IKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEKCTYADKYTQTPWRRIPGGYSAPSF
160 170 180 190 200 210
790 800 810 820 830 840
pF1KA1 SLPRPTDHTQGKLIKPQRIEARSECSIQDMHQGG-AHPEESFTHVLHQESNYGLEEQPFS
: . . . . . :.: .. : ..:. : .::
CCDS60 SPWQGSFQGIPRTVPPHRRQTSSTTAFQQPSQTHRSHPGKTNKATTYRGPQ
220 230 240 250 260
850 860 870 880 890 900
pF1KA1 SGPQLTMDVAKSTPSEANLNITVNAQEPYHLANNQISDMQFIPTSLQTPPESSTVDQAKR
1047 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:33:09 2016 done: Wed Nov 2 20:33:10 2016
Total Scan time: 3.900 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]