FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1160, 331 aa
  1>>>pF1KA1160 331 - 331 aa - 331 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8263+/-0.000736; mu= 5.9062+/- 0.045
 mean_var=157.2146+/-30.607, 0's: 0 Z-trim(114.9): 12  B-trim: 0 in 0/52
 Lambda= 0.102289
 statistics sampled from 15477 (15488) to 15477 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.476), width:  16
 Scan time:  2.980

The best scores are:                                      opt bits E(32554)
CCDS56276.1 RAB43 gene_id:100534599|Hs108|chr3     ( 331) 2192 334.5   7e-92
CCDS43149.1 ISY1 gene_id:57461|Hs108|chr3          ( 285) 1860 285.5 3.5e-77
CCDS56277.1 ISY1 gene_id:57461|Hs108|chr3          ( 307)  931 148.4 6.8e-36


>>CCDS56276.1 RAB43 gene_id:100534599|Hs108|chr3          (331 aa)
 initn: 2192 init1: 2192 opt: 2192  Z-score: 1763.1  bits: 334.5 E(32554): 7e-92
Smith-Waterman score: 2192; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)

               10        20        30        40        50        60
pF1KA1 MARNAEKAMTALARFRQAQLEEGKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MARNAEKAMTALARFRQAQLEEGKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 QNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 KYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAVTEEESDEEGSQEKGGDDSQQKFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAVTEEESDEEGSQEKGGDDSQQKFI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 AHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLLGCRSGTRPARSGSAPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLLGCRSGTRPARSGSAPSP
              250       260       270       280       290       300

              310       320       330 
pF1KA1 RATTAVPMGPSLPTTSPRGAPSCRCLTGLRM
       :::::::::::::::::::::::::::::::
CCDS56 RATTAVPMGPSLPTTSPRGAPSCRCLTGLRM
              310       320       330 

>>CCDS43149.1 ISY1 gene_id:57461|Hs108|chr3               (285 aa)
 initn: 1860 init1: 1860 opt: 1860  Z-score: 1499.2  bits: 285.5 E(32554): 3.5e-77
Smith-Waterman score: 1860; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)

               10        20        30        40        50        60
pF1KA1 MARNAEKAMTALARFRQAQLEEGKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MARNAEKAMTALARFRQAQLEEGKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 QNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 KYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAVTEEESDEEGSQEKGGDDSQQKFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAVTEEESDEEGSQEKGGDDSQQKFI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 AHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLLGCRSGTRPARSGSAPSP
       ::::::::::::::::::::::::::::::::::::::::::::                
CCDS43 AHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLLGY               
              250       260       270       280                    

              310       320       330 
pF1KA1 RATTAVPMGPSLPTTSPRGAPSCRCLTGLRM

>>CCDS56277.1 ISY1 gene_id:57461|Hs108|chr3               (307 aa)
 initn: 971 init1: 930 opt: 931  Z-score: 757.8  bits: 148.4 E(32554): 6.8e-36
Smith-Waterman score: 1796; 92.8% identity (92.8% similar) in 306 aa overlap (1-284:1-306)

               10        20        30        40        50        60
pF1KA1 MARNAEKAMTALARFRQAQLEEGKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MARNAEKAMTALARFRQAQLEEGKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 QNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGY
               70        80        90       100       110       120

              130              140                      150        
pF1KA1 KYFGAAKDLPGVRELFEKE-------P---------------LPPPRKTRAELMKAIDFE
       :::::::::::::::::::       :               ::::::::::::::::::
CCDS56 KYFGAAKDLPGVRELFEKERQVRWLMPVIPALWEAEAGGSQALPPPRKTRAELMKAIDFE
              130       140       150       160       170       180

      160       170       180       190       200       210        
pF1KA1 YYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAVT
              190       200       210       220       230       240

      220       230       240       250       260       270        
pF1KA1 EEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEE
              250       260       270       280       290       300

      280       290       300       310       320       330 
pF1KA1 ARRLLGCRSGTRPARSGSAPSPRATTAVPMGPSLPTTSPRGAPSCRCLTGLRM
       ::::::                                               
CCDS56 ARRLLGY                                              
                                                            




331 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:39:52 2016 done: Wed Nov  2 20:39:53 2016
 Total Scan time:  2.980 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]