(Circular) (Six-base) MAPSORT of: pF1KA1168.seq Check: 3423 from: 1 to: 6947 pF1KA1168 6947 bp With 182 enzymes: SgfI * June 20, 2008 10:20 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 1005 1479 3734 1005 Size: 474 2255 4218 Fragments arranged by size: 4218 2255 474 AccI GT'mk_AC Cuts at: 2288 3284 3985 2288 Size: 996 701 5250 Fragments arranged by size: 5250 996 701 Acc65I G'GTAC_C Cuts at: 3963 3963 Size: 6947 AclI AA'CG_TT Cuts at: 2355 6787 2355 Size: 4432 2515 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 2449 3139 3802 4772 5204 5557 6219 2449 Size: 690 663 970 432 353 662 3177 Fragments arranged by size: 3177 970 690 663 662 432 353 AflIII A'CryG_T Cuts at: 605 2439 3155 4299 6099 6380 605 Size: 1834 716 1144 1800 281 1172 Fragments arranged by size: 1834 1800 1172 1144 716 281 AhdI GACnn_n'nnGTC Cuts at: 1942 1942 Size: 6947 AlwNI CAG_nnn'CTG Cuts at: 690 2238 3168 4252 5690 690 Size: 1548 930 1084 1438 1947 Fragments arranged by size: 1947 1548 1438 1084 930 ApaI G_GGCC'C Cuts at: 3514 3514 Size: 6947 ApaLI G'TGCA_C Cuts at: 1107 5785 1107 Size: 4678 2269 ApoI r'AATT_y Cuts at: 997 1447 2053 2898 3951 6300 6556 997 Size: 450 606 845 1053 2349 256 1388 Fragments arranged by size: 2349 1388 1053 845 606 450 256 AseI AT'TA_AT Cuts at: 20 977 20 Size: 957 5990 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6947 AvaI C'yCGr_G Cuts at: 377 1794 3967 377 Size: 1417 2173 3357 Fragments arranged by size: 3357 2173 1417 BamHI G'GATC_C Cuts at: 2848 3092 3972 2848 Size: 244 880 5823 Fragments arranged by size: 5823 880 244 BanI G'GyrC_C Cuts at: 1020 1393 1743 3963 4377 4625 4660 1020 Size: 373 350 2220 414 248 35 3307 Fragments arranged by size: 3307 2220 414 373 350 248 35 BanII G_rGCy'C Cuts at: 1196 1231 1274 1589 1685 3146 3514 3961 4991 Size: 35 43 315 96 1461 368 447 1030 Cuts at: 4991 1196 Size: 3152 Fragments arranged by size: 3152 1461 1030 447 368 315 96 43 35 BbeI G_GCGC'C Cuts at: 4381 4629 4381 Size: 248 6699 BbsI GAAGACnn'nnnn_ Cuts at: 442 1509 1918 2700 442 Size: 1067 409 782 4689 Fragments arranged by size: 4689 1067 782 409 BbvCI CC'TCA_GC Cuts at: 2258 3386 2258 Size: 1128 5819 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 486 520 1823 1857 486 Size: 34 1303 34 5576 Fragments arranged by size: 5576 1303 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2408 4845 5901 6947 2408 Size: 2437 1056 1046 2408 Fragments arranged by size: 2437 2408 1056 1046 BclI T'GATC_A Cuts at: 1475 2277 4467 1475 Size: 802 2190 3955 Fragments arranged by size: 3955 2190 802 BfrBI ATG'CAT Cuts at: 191 259 191 Size: 68 6879 BglI GCCn_nnn'nGGC Cuts at: 1593 1838 1593 Size: 245 6702 BglII A'GATC_T Cuts at: 425 2306 3815 4462 6499 425 Size: 1881 1509 647 2037 873 Fragments arranged by size: 2037 1881 1509 873 647 BlpI GC'TnA_GC Cuts at: 3626 4059 3626 Size: 433 6514 Bme1580I G_kGCm'C Cuts at: 1025 1111 1748 3514 3779 4572 4665 5789 1025 Size: 86 637 1766 265 793 93 1124 2183 Fragments arranged by size: 2183 1766 1124 793 637 265 93 86 BmgBI CAC'GTC Cuts at: 120 1106 1326 2442 3156 3540 120 Size: 986 220 1116 714 384 3527 Fragments arranged by size: 3527 1116 986 714 384 220 BmrI ACTGGGnnnn_n' Cuts at: 705 765 872 1125 1674 3663 4159 4240 4575 Size: 60 107 253 549 1989 496 81 335 Cuts at: 4575 6719 705 Size: 2144 933 Fragments arranged by size: 2144 1989 933 549 496 335 253 107 81 60 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1356 3099 5314 1356 Size: 1743 2215 2989 Fragments arranged by size: 2989 2215 1743 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 291 346 472 2083 2593 2605 3001 3118 3328 Size: 55 126 1611 510 12 396 117 210 Cuts at: 3328 291 Size: 3910 Fragments arranged by size: 3910 1611 510 396 210 126 117 55 12 Bpu10I CC'TnA_GC Cuts at: 1230 2258 3386 1230 Size: 1028 1128 4791 Fragments arranged by size: 4791 1128 1028 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 883 1722 4123 5002 5716 6014 883 Size: 839 2401 879 714 298 1816 Fragments arranged by size: 2401 1816 879 839 714 298 BsaI GGTCTCn'nnnn_ Cuts at: 1060 6651 1060 Size: 5591 1356 BsaAI yAC'GTr Cuts at: 4300 4300 Size: 6947 BsaBI GATnn'nnATC Cuts at: 6 4461 6498 6 Size: 4455 2037 455 Fragments arranged by size: 4455 2037 455 BsaHI Gr'CG_yC Cuts at: 2384 3530 4378 4626 5328 6824 2384 Size: 1146 848 248 702 1496 2507 Fragments arranged by size: 2507 1496 1146 848 702 248 BsaWI w'CCGG_w Cuts at: 3314 3797 4136 4657 5335 5746 5893 6167 3314 Size: 483 339 521 678 411 147 274 4094 Fragments arranged by size: 4094 678 521 483 411 339 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 878 908 2542 2560 2572 2590 3421 3451 878 Size: 30 1634 18 12 18 831 30 4374 Fragments arranged by size: 4374 1634 831 30 30 18 18 12 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 826 886 1273 1935 3193 3244 826 Size: 60 387 662 1258 51 4529 Fragments arranged by size: 4529 1258 662 387 60 51 BseYI C'CCAG_C Cuts at: 2036 2486 3375 3681 4372 5130 5795 6203 2036 Size: 450 889 306 691 758 665 408 2780 Fragments arranged by size: 2780 889 758 691 665 450 408 306 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 663 3757 663 Size: 3094 3853 BsiEI CG_ry'CG Cuts at: 104 3798 4489 4535 5765 104 Size: 3694 691 46 1230 1286 Fragments arranged by size: 3694 1286 1230 691 46 BsiHKAI G_wGCw'C Cuts at: 1077 1111 1196 1274 1496 3146 3961 4739 4929 Size: 34 85 78 222 1650 815 778 190 Cuts at: 4929 5789 1077 Size: 860 2235 Fragments arranged by size: 2235 1650 860 815 778 222 190 85 78 34 BsmI GAATG_Cn' Cuts at: 261 3476 261 Size: 3215 3732 Bsp1286I G_dGCh'C Cuts at: 1025 1077 1111 1196 1231 1274 1496 1589 1685 Size: 52 34 85 35 43 222 93 96 Cuts at: 1685 1748 3146 3514 3779 3961 4572 4665 4739 Size: 63 1398 368 265 182 611 93 74 Cuts at: 4739 4929 4991 5789 1025 Size: 190 62 798 2183 Fragments arranged by size: 2183 1398 798 611 368 265 222 190 182 96 93 93 85 74 63 62 52 43 35 34 BspEI T'CCGG_A Cuts at: 3314 3314 Size: 6947 BspHI T'CATG_A Cuts at: 473 5379 473 Size: 4906 2041 BspMI ACCTGCnnnn'nnnn_ Cuts at: 161 1005 1479 2826 3497 3734 3997 4211 4513 Size: 844 474 1347 671 237 263 214 302 Cuts at: 4513 4894 161 Size: 381 2214 Fragments arranged by size: 2214 1347 844 671 474 381 302 263 237 214 BsrBI CCG'CTC Cuts at: 50 510 3348 3372 3432 5239 5293 6777 6942 Size: 460 2838 24 60 1807 54 1484 165 Cuts at: 6942 50 Size: 55 Fragments arranged by size: 2838 1807 1484 460 165 60 55 54 24 BsrDI GCAATG_nn' Cuts at: 272 1552 1886 2864 3189 3398 4859 272 Size: 1280 334 978 325 209 1461 2360 Fragments arranged by size: 2360 1461 1280 978 334 325 209 BsrFI r'CCGG_y Cuts at: 2594 3563 4945 5126 2594 Size: 969 1382 181 4415 Fragments arranged by size: 4415 1382 969 181 BsrGI T'GTAC_A Cuts at: 356 1856 2189 356 Size: 1500 333 5114 Fragments arranged by size: 5114 1500 333 BssSI C'ACGA_G Cuts at: 5218 5926 5218 Size: 708 6239 BstAPI GCAn_nnn'nTGC Cuts at: 1020 2610 4324 1020 Size: 1590 1714 3643 Fragments arranged by size: 3643 1714 1590 BstBI TT'CG_AA Cuts at: 1647 5308 1647 Size: 3661 3286 BstEII G'GTnAC_C Cuts at: 462 3412 462 Size: 2950 3997 BstXI CCAn_nnnn'nTGG Cuts at: 747 747 Size: 6947 BstYI r'GATC_y Cuts at: 1 425 705 1160 2184 2306 2848 3092 3815 Size: 424 280 455 1024 122 542 244 723 Cuts at: 3815 3972 4439 4462 4797 5043 5349 5361 5447 Size: 157 467 23 335 246 306 12 86 Cuts at: 5447 6499 1 Size: 1052 449 Fragments arranged by size: 1052 1024 723 542 467 455 449 424 335 306 280 246 244 157 122 86 23 12 Bsu36I CC'TnA_GG Cuts at: 1918 3169 1918 Size: 1251 5696 BtgI C'CryG_G Cuts at: 1397 2072 2327 3863 1397 Size: 675 255 1536 4481 Fragments arranged by size: 4481 1536 675 255 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 2940 3656 4897 5078 5241 2940 Size: 716 1241 181 163 4646 Fragments arranged by size: 4646 1241 716 181 163 BtsI GCAGTG_nn' Cuts at: 2026 2343 2422 3637 4190 2026 Size: 317 79 1215 553 4783 Fragments arranged by size: 4783 1215 553 317 79 DraI TTT'AAA Cuts at: 2226 3946 2226 Size: 1720 5227 DraIII CAC_nnn'GTG Cuts at: 773 2673 773 Size: 1900 5047 DrdI GACnn_nn'nnGTC Cuts at: 4653 5997 4653 Size: 1344 5603 EaeI y'GGCC_r Cuts at: 749 1052 2688 3791 3929 4532 4706 5097 5124 Size: 303 1636 1103 138 603 174 391 27 Cuts at: 5124 6469 749 Size: 1345 1227 Fragments arranged by size: 1636 1345 1227 1103 603 391 303 174 138 27 EagI C'GGCC_G Cuts at: 4532 4532 Size: 6947 EarI CTCTTCn'nnn_ Cuts at: 155 964 1079 1279 1830 2986 3199 4970 5180 Size: 809 115 200 551 1156 213 1771 210 Cuts at: 5180 155 Size: 1922 Fragments arranged by size: 1922 1771 1156 809 551 213 210 200 115 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 2667 5155 5897 6043 6757 2667 Size: 2488 742 146 714 2857 Fragments arranged by size: 2857 2488 742 714 146 EcoICRI GAG'CTC Cuts at: 1194 1272 3144 3959 1194 Size: 78 1872 815 4182 Fragments arranged by size: 4182 1872 815 78 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 291 346 472 2083 2449 2593 2605 3001 3118 Size: 55 126 1611 366 144 12 396 117 Cuts at: 3118 3139 3328 3802 4772 5204 5557 6219 291 Size: 21 189 474 970 432 353 662 1019 Fragments arranged by size: 1611 1019 970 662 474 432 396 366 353 189 144 126 117 55 21 12 EcoNI CCTnn'n_nnAGG Cuts at: 672 1594 3424 672 Size: 922 1830 4195 Fragments arranged by size: 4195 1830 922 EcoO109I rG'GnC_Cy Cuts at: 1716 2550 3380 3495 3510 4086 1716 Size: 834 830 115 15 576 4577 Fragments arranged by size: 4577 834 830 576 115 15 EcoRI G'AATT_C Cuts at: 2053 3951 2053 Size: 1898 5049 EcoRV GAT'ATC Cuts at: 1737 1737 Size: 6947 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 4966 4966 Size: 6947 FspI TGC'GCA Cuts at: 4728 4728 Size: 6947 HaeII r_GCGC'y Cuts at: 1322 2204 3306 3578 4381 4629 5859 6630 1322 Size: 882 1102 272 803 248 1230 771 1639 Fragments arranged by size: 1639 1230 1102 882 803 771 272 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 124 156 410 442 550 582 690 697 722 Size: 32 254 32 108 32 108 7 25 Cuts at: 722 729 963 995 1059 1078 1091 1110 1721 Size: 7 234 32 64 19 13 19 611 Cuts at: 1721 1753 1928 1960 2542 2574 3272 3304 3309 Size: 32 175 32 582 32 698 32 5 Cuts at: 3309 3341 4789 4819 4821 4851 124 Size: 32 1448 30 2 30 2220 Fragments arranged by size: 2220 1448 698 611 582 254 234 175 108 108 64 32 32 32 32 32 32 32 32 32 30 30 25 19 19 13 7 7 5 2 HincII GTy'rAC Cuts at: 834 2069 3986 834 Size: 1235 1917 3795 Fragments arranged by size: 3795 1917 1235 HpaI GTT'AAC Cuts at: 2069 2069 Size: 6947 KasI G'GCGC_C Cuts at: 4377 4625 4377 Size: 248 6699 KpnI G_GTAC'C Cuts at: 3967 3967 Size: 6947 MfeI C'AATT_G Cuts at: 2462 2462 Size: 6947 MluI A'CGCG_T Cuts at: 6380 6380 Size: 6947 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 167 2327 5706 5890 167 Size: 2160 3379 184 1224 Fragments arranged by size: 3379 2160 1224 184 MscI TGG'CCA Cuts at: 751 1054 3931 4708 751 Size: 303 2877 777 2990 Fragments arranged by size: 2990 2877 777 303 MslI CAynn'nnrTG Cuts at: 341 604 841 1333 2101 2959 3077 3542 3601 Size: 263 237 492 768 858 118 465 59 Cuts at: 3601 4936 5063 341 Size: 1335 127 2225 Fragments arranged by size: 2225 1335 858 768 492 465 263 237 127 118 59 MspA1I CmG'CkG Cuts at: 371 1011 1399 2448 3117 3625 4058 4372 4732 Size: 640 388 1049 669 508 433 314 360 Cuts at: 4732 5516 5761 371 Size: 784 245 1557 Fragments arranged by size: 1557 1049 784 669 640 508 433 388 360 314 245 NaeI GCC'GGC Cuts at: 5128 5128 Size: 6947 NarI GG'CG_CC Cuts at: 4378 4626 4378 Size: 248 6699 NcoI C'CATG_G Cuts at: 2072 2327 2072 Size: 255 6692 NdeI CA'TA_TG Cuts at: 890 2624 890 Size: 1734 5213 NgoMIV G'CCGG_C Cuts at: 5126 5126 Size: 6947 NruI TCG'CGA Cuts at: 1268 3407 1268 Size: 2139 4808 NsiI A_TGCA'T Cuts at: 193 261 193 Size: 68 6879 NspI r_CATG'y Cuts at: 609 1041 2707 3895 4000 4500 6103 609 Size: 432 1666 1188 105 500 1603 1453 Fragments arranged by size: 1666 1603 1453 1188 500 432 105 PasI CC'CwG_GG Cuts at: 3088 3088 Size: 6947 PciI A'CATG_T Cuts at: 605 6099 605 Size: 5494 1453 PflMI CCAn_nnn'nTGG Cuts at: 1329 2114 2136 2451 3927 1329 Size: 785 22 315 1476 4349 Fragments arranged by size: 4349 1476 785 315 22 PfoI T'CCnGG_A Cuts at: 617 719 1163 2060 2135 3095 617 Size: 102 444 897 75 960 4469 Fragments arranged by size: 4469 960 897 444 102 75 PmeI GTTT'AAAC Cuts at: 3946 3946 Size: 6947 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 5393 5425 5393 Size: 32 6915 PpuMI rG'GwC_Cy Cuts at: 1716 2550 3380 3495 1716 Size: 834 830 115 5168 Fragments arranged by size: 5168 834 830 115 PspOMI G'GGCC_C Cuts at: 3510 3510 Size: 6947 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 850 882 1528 1560 850 Size: 32 646 32 6237 Fragments arranged by size: 6237 646 32 32 PstI C_TGCA'G Cuts at: 520 1016 1301 1490 2018 2935 3494 3994 4679 Size: 496 285 189 528 917 559 500 685 Cuts at: 4679 520 Size: 2788 Fragments arranged by size: 2788 917 685 559 528 500 496 285 189 PvuI CG_AT'CG Cuts at: 104 104 Size: 6947 PvuII CAG'CTG Cuts at: 371 1011 2448 3117 3625 4372 4732 371 Size: 640 1437 669 508 747 360 2586 Fragments arranged by size: 2586 1437 747 669 640 508 360 RsrII CG'GwC_CG Cuts at: 5142 5142 Size: 6947 SacI G_AGCT'C Cuts at: 1196 1274 3146 3961 1196 Size: 78 1872 815 4182 Fragments arranged by size: 4182 1872 815 78 SacII CC_GC'GG Cuts at: 1400 1400 Size: 6947 SalI G'TCGA_C Cuts at: 3984 3984 Size: 6947 SanDI GG'GwC_CC Cuts at: 3380 3380 Size: 6947 SapI GCTCTTCn'nnn_ Cuts at: 155 1279 2986 4970 5180 155 Size: 1124 1707 1984 210 1922 Fragments arranged by size: 1984 1922 1707 1124 210 SbfI CC_TGCA'GG Cuts at: 1490 3494 3994 1490 Size: 2004 500 4443 Fragments arranged by size: 4443 2004 500 ScaI AGT'ACT Cuts at: 6464 6464 Size: 6947 SexAI A'CCwGG_T Cuts at: 3353 3353 Size: 6947 SfcI C'TryA_G Cuts at: 33 296 516 1012 1203 1297 1486 1636 2014 Size: 263 220 496 191 94 189 150 378 Cuts at: 2014 2871 2883 2892 2931 3490 3990 4675 5643 Size: 857 12 9 39 559 500 685 968 Cuts at: 5643 5834 33 Size: 191 1146 Fragments arranged by size: 1146 968 857 685 559 500 496 378 263 220 191 191 189 150 94 39 12 9 SfoI GGC'GCC Cuts at: 4379 4627 4379 Size: 248 6699 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6947 SmaI CCC'GGG Cuts at: 379 3969 379 Size: 3590 3357 SmlI C'TyrA_G Cuts at: 898 1701 4102 5017 5731 5993 898 Size: 803 2401 915 714 262 1852 Fragments arranged by size: 2401 1852 915 803 714 262 SpeI A'CTAG_T Cuts at: 67 67 Size: 6947 SphI G_CATG'C Cuts at: 4000 4500 4000 Size: 500 6447 StuI AGG'CCT Cuts at: 574 1484 1780 574 Size: 910 296 5741 Fragments arranged by size: 5741 910 296 StyI C'CwwG_G Cuts at: 588 2072 2327 2516 3003 3425 3926 4081 4435 Size: 1484 255 189 487 422 501 155 354 Cuts at: 4435 588 Size: 3100 Fragments arranged by size: 3100 1484 501 487 422 354 255 189 155 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 784 1126 2809 3927 4530 4663 5122 5331 784 Size: 342 1683 1118 603 133 459 209 2400 Fragments arranged by size: 2400 1683 1118 603 459 342 209 133 TatI w'GTAC_w Cuts at: 356 1133 1337 1856 2189 3590 6462 356 Size: 777 204 519 333 1401 2872 841 Fragments arranged by size: 2872 1401 841 777 519 333 204 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 1957 1989 2560 2592 2659 2691 3421 3453 6464 Size: 32 571 32 67 32 730 32 3011 Cuts at: 6464 6496 1957 Size: 32 2408 Fragments arranged by size: 3011 2408 730 571 67 32 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 562 829 4744 562 Size: 267 3915 2765 Fragments arranged by size: 3915 2765 267 XbaI T'CTAG_A Cuts at: 3978 3978 Size: 6947 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2568 4442 2568 Size: 1874 5073 XmaI C'CCGG_G Cuts at: 377 3967 377 Size: 3590 3357 XmnI GAAnn'nnTTC Cuts at: 164 164 Size: 6947 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AflIII AhdI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NruI NsiI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PspOMI PsrI PstI PvuI PvuII RsrII SacI SacII SalI SanDI SapI SbfI ScaI SexAI SfcI SfoI SgfI SmaI SmlI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI XmnI Enzymes that do not cut: AatII AfeI AflII AgeI AleI AlfI AloI AscI AvrII BaeI BmtI BsiWI BsmBI BssHII BstZ17I ClaI CspCI FseI FspAI HindIII NheI NotI PacI PmlI PshAI PsiI PspXI SfiI SgrAI SnaBI SrfI SspI SwaI XhoI ZraI