Result of FASTA (ccds) for
pF1KA1181
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1181, 290 aa
1>>>pF1KA1181 290 - 290 aa - 290 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8722+/-0.000932; mu= 11.5198+/- 0.055
mean_var=60.1061+/-11.951, 0's: 0 Z-trim(104.3): 18 B-trim: 0 in 0/51
Lambda= 0.165430
statistics sampled from 7838 (7846) to 7838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.241), width: 16
Scan time: 2.080
The best scores are: opt bits E(32554)
CCDS34292.1 ERGIC1 gene_id:57222|Hs108|chr5 ( 290) 1963 477.0 6.8e-135
CCDS13257.1 ERGIC3 gene_id:51614|Hs108|chr20 ( 383) 375 98.1 1.1e-20
CCDS13258.1 ERGIC3 gene_id:51614|Hs108|chr20 ( 388) 328 86.8 2.6e-17
CCDS41765.1 ERGIC2 gene_id:51290|Hs108|chr12 ( 377) 271 73.2 3.2e-13
>>CCDS34292.1 ERGIC1 gene_id:57222|Hs108|chr5 (290 aa)
initn: 1963 init1: 1963 opt: 1963 Z-score: 2535.3 bits: 477.0 E(32554): 6.8e-135
Smith-Waterman score: 1963; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KA1 MPFDFRRFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGFITTEVVNELYVDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MPFDFRRFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGFITTEVVNELYVDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 PDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGAGCRFEGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGAGCRFEGQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 FSINKVPGNFHVSTHSATAQPQNPDMTHVIHKLSFGDTLQVQNIHGAFNALGGADRLTSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FSINKVPGNFHVSTHSATAQPQNPDMTHVIHKLSFGDTLQVQNIHGAFNALGGADRLTSN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 PLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITV
190 200 210 220 230 240
250 260 270 280 290
pF1KA1 KYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGKMH
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGKMH
250 260 270 280 290
>>CCDS13257.1 ERGIC3 gene_id:51614|Hs108|chr20 (383 aa)
initn: 471 init1: 169 opt: 375 Z-score: 484.9 bits: 98.1 E(32554): 1.1e-20
Smith-Waterman score: 375; 36.8% identity (63.7% similar) in 201 aa overlap (104-288:188-381)
80 90 100 110 120 130
pF1KA1 NISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVS
:.:. ... ::. : . .::: :::: .
CCDS13 TCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFA
160 170 180 190 200 210
140 150 160 170 180
pF1KA1 THSATAQPQ------------NPDMTHVIHKLSFGDTLQVQNIHGAFNALGGADRLTSNP
.. : . : .::: :..::::. . : : : .. .. :
CCDS13 PGKSFQQSHVHVHDLQSFGLDNINMTHYIQHLSFGE-----DYPGIVNPLDHTN--VTAP
220 230 240 250 260 270
190 200 210 220 230
pF1KA1 LASH--DYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTG-RIIPAIWFRYDLSPI
:: .:..:.::::: .:. . :..:. .: :: . : . .:... :.:::.
CCDS13 QASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPM
280 290 300 310 320 330
240 250 260 270 280 290
pF1KA1 TVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEA-WKKIQLGKMH
:: ::... . .:.: .:::::: :::::..:: :. ...: :::.:::
CCDS13 MVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT
340 350 360 370 380
>>CCDS13258.1 ERGIC3 gene_id:51614|Hs108|chr20 (388 aa)
initn: 475 init1: 169 opt: 328 Z-score: 424.2 bits: 86.8 E(32554): 2.6e-17
Smith-Waterman score: 366; 36.4% identity (63.1% similar) in 206 aa overlap (104-288:188-386)
80 90 100 110 120 130
pF1KA1 NISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFH--
:.:. ... ::. : . .::: ::::
CCDS13 TCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFA
160 170 180 190 200 210
140 150 160 170
pF1KA1 ---------VSTHSATAQP------QNPDMTHVIHKLSFGDTLQVQNIHGAFNALGGADR
: .:.. . .: .::: :..::::. . : : : ..
CCDS13 PGKSFQQSHVHVHAVEIHDLQSFGLDNINMTHYIQHLSFGE-----DYPGIVNPLDHTN-
220 230 240 250 260 270
180 190 200 210 220 230
pF1KA1 LTSNPLASH--DYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTG-RIIPAIWFRY
.. : :: .:..:.::::: .:. . :..:. .: :: . : . .:... :
CCDS13 -VTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLY
280 290 300 310 320 330
240 250 260 270 280 290
pF1KA1 DLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEA-WKKIQLGKMH
.:::. :: ::... . .:.: .:::::: :::::..:: :. ...: :::.:::
CCDS13 ELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT
340 350 360 370 380
>>CCDS41765.1 ERGIC2 gene_id:51290|Hs108|chr12 (377 aa)
initn: 224 init1: 137 opt: 271 Z-score: 350.9 bits: 73.2 E(32554): 3.2e-13
Smith-Waterman score: 271; 27.3% identity (64.5% similar) in 183 aa overlap (102-270:161-332)
80 90 100 110 120 130
pF1KA1 SLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFH
:.: . : .::..:.. .::: ::::
CCDS41 QSRLQEEHSLQDVIFKSAFKSTSTALPPREDDSSQSP----NACRIHGHLYVNKVAGNFH
140 150 160 170 180
140 150 160 170
pF1KA1 VSTHSATAQP------------QNPDMTHVIHKLSFGDTLQVQNIHGAFNALGGADRLTS
... .: .: .. ...: : .::::. . . .: : :.....
CCDS41 ITVGKAIPHPRGHAHLAALVNHESYNFSHRIDHLSFGEL-----VPAIINPLDGTEKIAI
190 200 210 220 230 240
180 190 200 210 220 230
pF1KA1 NPLASHDYILKIVPT-VYEDKSGKQRYSYQYTVANKEYVAYSHTG-RIIPAIWFRYDLSP
. .:.. .::: .. : . . ..:..:...: . .: . . .:...::::
CCDS41 DHNQMFQYFITVVPTKLHTYKISAD--THQFSVTERERIINHAAGSHGVSGIFMKYDLSS
250 260 270 280 290
240 250 260 270 280 290
pF1KA1 ITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGKMH
. : ::...:...:.. .:.:.:: :...:.:
CCDS41 LMVTVTEEHMPFWQFFVRLCGIVGGIFSTTGMLHGIGKFIVEIICCRFRLGSYKPVNSVP
300 310 320 330 340 350
CCDS41 FEDGHTDNHLPLLENNTH
360 370
290 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:23:17 2016 done: Fri Nov 4 01:23:17 2016
Total Scan time: 2.080 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]