FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1182, 580 aa
  1>>>pF1KA1182 580 - 580 aa - 580 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0748+/-0.000352; mu= 15.7443+/- 0.022
 mean_var=81.7416+/-16.184, 0's: 0 Z-trim(114.4): 8  B-trim: 0 in 0/57
 Lambda= 0.141858
 statistics sampled from 24305 (24307) to 24305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.285), width:  16
 Scan time: 10.380

The best scores are:                                      opt bits E(85289)
NP_056271 (OMIM: 611180) negative elongation facto ( 628) 3813 790.2       0


>>NP_056271 (OMIM: 611180) negative elongation factor B   (628 aa)
 initn: 3813 init1: 3813 opt: 3813  Z-score: 4216.5  bits: 790.2 E(85289):    0
Smith-Waterman score: 3813; 100.0% identity (100.0% similar) in 580 aa overlap (1-580:49-628)

                                             10        20        30
pF1KA1                               MFAGLQDLGVANGEDLKETLTNCTEPLKAI
                                     ::::::::::::::::::::::::::::::
NP_056 AERASGVSAAAPGERAGDGAPSRAVAGASAMFAGLQDLGVANGEDLKETLTNCTEPLKAI
       20        30        40        50        60        70        

               40        50        60        70        80        90
pF1KA1 EQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERY
       80        90       100       110       120       130        

              100       110       120       130       140       150
pF1KA1 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW
      140       150       160       170       180       190        

              160       170       180       190       200       210
pF1KA1 QDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQRLTRMVGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQRLTRMVGK
      200       210       220       230       240       250        

              220       230       240       250       260       270
pF1KA1 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVGEICTVDPCHKFTWCLDACI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVGEICTVDPCHKFTWCLDACI
      260       270       280       290       300       310        

              280       290       300       310       320       330
pF1KA1 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLALSTVRHLQELVGQET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLALSTVRHLQELVGQET
      320       330       340       350       360       370        

              340       350       360       370       380       390
pF1KA1 LPRDSPDLLLLLRLLALGQGAWDMIDSQVFKEPKMEVELITRFLPMLMSFLVDDYTFNVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LPRDSPDLLLLLRLLALGQGAWDMIDSQVFKEPKMEVELITRFLPMLMSFLVDDYTFNVD
      380       390       400       410       420       430        

              400       410       420       430       440       450
pF1KA1 QKLPAEEKAPVSYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QKLPAEEKAPVSYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE
      440       450       460       470       480       490        

              460       470       480       490       500       510
pF1KA1 TFGDLAFGDIFLHLLTGNLALLADEFALEDFCSSLFDGFFLTASPRKENVHRHALRLLIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TFGDLAFGDIFLHLLTGNLALLADEFALEDFCSSLFDGFFLTASPRKENVHRHALRLLIH
      500       510       520       530       540       550        

              520       530       540       550       560       570
pF1KA1 LHPRVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPAQAAETPALELP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LHPRVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPAQAAETPALELP
      560       570       580       590       600       610        

              580
pF1KA1 LPSVPAPAPL
       ::::::::::
NP_056 LPSVPAPAPL
      620        




580 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:42:42 2016 done: Wed Nov  2 20:42:43 2016
 Total Scan time: 10.380 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]