Result of FASTA (omim) for
pF1KA1189
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1189, 284 aa
1>>>pF1KA1189 284 - 284 aa - 284 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5021+/-0.000335; mu= 5.7719+/- 0.021
mean_var=149.9929+/-29.362, 0's: 0 Z-trim(119.0): 28 B-trim: 0 in 0/60
Lambda= 0.104722
statistics sampled from 32605 (32633) to 32605 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.383), width: 16
Scan time: 7.640
The best scores are: opt bits E(85289)
NP_001291273 (OMIM: 610072) ermin isoform b [Homo ( 284) 1886 296.2 4.8e-80
NP_065762 (OMIM: 610072) ermin isoform b [Homo sap ( 284) 1886 296.2 4.8e-80
NP_001291274 (OMIM: 610072) ermin isoform b [Homo ( 284) 1886 296.2 4.8e-80
NP_001009959 (OMIM: 610072) ermin isoform a [Homo ( 297) 1886 296.2 4.9e-80
NP_001291275 (OMIM: 610072) ermin isoform c [Homo ( 264) 1263 202.0 9.7e-52
>>NP_001291273 (OMIM: 610072) ermin isoform b [Homo sapi (284 aa)
initn: 1886 init1: 1886 opt: 1886 Z-score: 1558.1 bits: 296.2 E(85289): 4.8e-80
Smith-Waterman score: 1886; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KA1 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEPSLEGALTKGSQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEPSLEGALTKGSQEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEMTFREGHQWEKIPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEMTFREGHQWEKIPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 SGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 VWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSPLSSASSQAVTPDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSPLSSASSQAVTPDE
190 200 210 220 230 240
250 260 270 280
pF1KA1 QPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
250 260 270 280
>>NP_065762 (OMIM: 610072) ermin isoform b [Homo sapiens (284 aa)
initn: 1886 init1: 1886 opt: 1886 Z-score: 1558.1 bits: 296.2 E(85289): 4.8e-80
Smith-Waterman score: 1886; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KA1 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEPSLEGALTKGSQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEPSLEGALTKGSQEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEMTFREGHQWEKIPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEMTFREGHQWEKIPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 SGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 VWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSPLSSASSQAVTPDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 VWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSPLSSASSQAVTPDE
190 200 210 220 230 240
250 260 270 280
pF1KA1 QPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
::::::::::::::::::::::::::::::::::::::::::::
NP_065 QPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
250 260 270 280
>>NP_001291274 (OMIM: 610072) ermin isoform b [Homo sapi (284 aa)
initn: 1886 init1: 1886 opt: 1886 Z-score: 1558.1 bits: 296.2 E(85289): 4.8e-80
Smith-Waterman score: 1886; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KA1 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEPSLEGALTKGSQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEPSLEGALTKGSQEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEMTFREGHQWEKIPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEMTFREGHQWEKIPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 SGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 VWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSPLSSASSQAVTPDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSPLSSASSQAVTPDE
190 200 210 220 230 240
250 260 270 280
pF1KA1 QPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
250 260 270 280
>>NP_001009959 (OMIM: 610072) ermin isoform a [Homo sapi (297 aa)
initn: 1886 init1: 1886 opt: 1886 Z-score: 1557.8 bits: 296.2 E(85289): 4.9e-80
Smith-Waterman score: 1886; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:14-297)
10 20 30 40
pF1KA1 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEP
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTLSPDRIQPHIMTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KA1 SLEGALTKGSQEERRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLEGALTKGSQEERRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEM
70 80 90 100 110 120
110 120 130 140 150 160
pF1KA1 TFREGHQWEKIPLSGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFREGHQWEKIPLSGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KA1 ADMLHSKHDEEQKVWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADMLHSKHDEEQKVWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KA1 LSSASSQAVTPDEQPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSSASSQAVTPDEQPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
250 260 270 280 290
>>NP_001291275 (OMIM: 610072) ermin isoform c [Homo sapi (264 aa)
initn: 1242 init1: 1242 opt: 1263 Z-score: 1049.9 bits: 202.0 E(85289): 9.7e-52
Smith-Waterman score: 1711; 93.0% identity (93.0% similar) in 284 aa overlap (1-284:1-264)
10 20 30 40 50 60
pF1KA1 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEPSLEGALTKGSQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEPSLEGALTKGSQEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEMTFREGHQWEKIPL
::::::::::::::::::::: :::::::::::::::::::
NP_001 RRKLQGNMLLNSSMEDKMLKE--------------------TSADEMTFREGHQWEKIPL
70 80 90 100
130 140 150 160 170 180
pF1KA1 SGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQK
110 120 130 140 150 160
190 200 210 220 230 240
pF1KA1 VWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSPLSSASSQAVTPDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSPLSSASSQAVTPDE
170 180 190 200 210 220
250 260 270 280
pF1KA1 QPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
230 240 250 260
284 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:43:19 2016 done: Wed Nov 2 20:43:20 2016
Total Scan time: 7.640 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]