(Circular) (Six-base) MAPSORT of: pF1KA1255.seq Check: 2294 from: 1 to: 6746 pF1KA1255 6746 bp With 182 enzymes: SgfI * June 20, 2008 10:21 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2820 2820 Size: 6746 AatII G_ACGT'C Cuts at: 3627 3627 Size: 6746 AccI GT'mk_AC Cuts at: 3784 3784 Size: 6746 Acc65I G'GTAC_C Cuts at: 3762 3762 Size: 6746 AclI AA'CG_TT Cuts at: 6586 6586 Size: 6746 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 463 1962 2392 4571 5003 5356 6018 463 Size: 1499 430 2179 432 353 662 1191 Fragments arranged by size: 2179 1499 1191 662 432 430 353 AfeI AGC'GCT Cuts at: 331 852 331 Size: 521 6225 AflIII A'CryG_T Cuts at: 1347 2273 4098 5898 6179 1347 Size: 926 1825 1800 281 1914 Fragments arranged by size: 1914 1825 1800 926 281 AhdI GACnn_n'nnGTC Cuts at: 2088 2088 Size: 6746 AleI CACnn'nnGTG Cuts at: 470 470 Size: 6746 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 488 1319 3388 3391 488 Size: 831 2069 3 3843 Fragments arranged by size: 3843 2069 831 3 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 616 648 616 Size: 32 6714 AlwNI CAG_nnn'CTG Cuts at: 731 1392 2058 2477 3084 3504 4051 5489 731 Size: 661 666 419 607 420 547 1438 1988 Fragments arranged by size: 1988 1438 666 661 607 547 420 419 ApaI G_GGCC'C Cuts at: 189 189 Size: 6746 ApaLI G'TGCA_C Cuts at: 3216 3570 5584 3216 Size: 354 2014 4378 Fragments arranged by size: 4378 2014 354 ApoI r'AATT_y Cuts at: 2850 2925 3750 6099 6355 2850 Size: 75 825 2349 256 3241 Fragments arranged by size: 3241 2349 825 256 75 AseI AT'TA_AT Cuts at: 20 20 Size: 6746 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6746 AvaI C'yCGr_G Cuts at: 189 1994 2261 3442 3766 189 Size: 1805 267 1181 324 3169 Fragments arranged by size: 3169 1805 1181 324 267 BamHI G'GATC_C Cuts at: 3771 3771 Size: 6746 BanI G'GyrC_C Cuts at: 224 1195 1303 1675 1774 2402 2506 2611 3762 Size: 971 108 372 99 628 104 105 1151 Cuts at: 3762 4176 4424 4459 224 Size: 414 248 35 2511 Fragments arranged by size: 2511 1151 971 628 414 372 248 108 105 104 99 35 BanII G_rGCy'C Cuts at: 189 1763 2065 2450 3438 3760 4790 189 Size: 1574 302 385 988 322 1030 2145 Fragments arranged by size: 2145 1574 1030 988 385 322 302 BbeI G_GCGC'C Cuts at: 1778 2510 4180 4428 1778 Size: 732 1670 248 4096 Fragments arranged by size: 4096 1670 732 248 BbsI GAAGACnn'nnnn_ Cuts at: 521 927 932 1469 2590 3619 521 Size: 406 5 537 1121 1029 3648 Fragments arranged by size: 3648 1121 1029 537 406 5 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 90 124 564 598 90 Size: 34 440 34 6238 Fragments arranged by size: 6238 440 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3347 4644 5700 6746 3347 Size: 1297 1056 1046 3347 Fragments arranged by size: 3347 1297 1056 1046 BclI T'GATC_A Cuts at: 872 2903 4266 872 Size: 2031 1363 3352 Fragments arranged by size: 3352 2031 1363 BfrBI ATG'CAT Cuts at: 3326 3326 Size: 6746 BglI GCCn_nnn'nGGC Cuts at: 149 193 406 149 Size: 44 213 6489 Fragments arranged by size: 6489 213 44 BglII A'GATC_T Cuts at: 1002 1014 1134 4261 6298 1002 Size: 12 120 3127 2037 1450 Fragments arranged by size: 3127 2037 1450 120 12 BlpI GC'TnA_GC Cuts at: 2825 3858 2825 Size: 1033 5713 Bme1580I G_kGCm'C Cuts at: 189 1200 1680 3220 3574 4371 4464 5588 189 Size: 1011 480 1540 354 797 93 1124 1347 Fragments arranged by size: 1540 1347 1124 1011 797 480 354 93 BmgBI CAC'GTC Cuts at: 930 2484 930 Size: 1554 5192 BmrI ACTGGGnnnn_n' Cuts at: 1201 3958 4039 4374 6518 1201 Size: 2757 81 335 2144 1429 Fragments arranged by size: 2757 2144 1429 335 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1153 5113 1153 Size: 3960 2786 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 531 631 1057 1122 1652 1942 2087 2179 2194 Size: 100 426 65 530 290 145 92 15 Cuts at: 2194 2353 2623 531 Size: 159 270 4654 Fragments arranged by size: 4654 530 426 290 270 159 145 100 92 65 15 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3922 4801 5515 5813 3922 Size: 879 714 298 4855 Fragments arranged by size: 4855 879 714 298 BsaI GGTCTCn'nnnn_ Cuts at: 1991 6450 1991 Size: 4459 2287 BsaAI yAC'GTr Cuts at: 2658 4099 2658 Size: 1441 5305 BsaBI GATnn'nnATC Cuts at: 6 560 4260 6297 6 Size: 554 3700 2037 455 Fragments arranged by size: 3700 2037 554 455 BsaHI Gr'CG_yC Cuts at: 233 1775 1867 2507 3227 3624 4177 4425 5127 Size: 1542 92 640 720 397 553 248 702 Cuts at: 5127 6623 233 Size: 1496 356 Fragments arranged by size: 1542 1496 720 702 640 553 397 356 248 92 BsaWI w'CCGG_w Cuts at: 1899 1971 3425 3935 4456 5134 5545 5692 5966 Size: 72 1454 510 521 678 411 147 274 Cuts at: 5966 1899 Size: 2679 Fragments arranged by size: 2679 1454 678 521 510 411 274 147 72 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 3011 3041 3526 3556 3011 Size: 30 485 30 6201 Fragments arranged by size: 6201 485 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 670 772 1145 2279 670 Size: 102 373 1134 5137 Fragments arranged by size: 5137 1134 373 102 BseYI C'CCAG_C Cuts at: 962 2010 2051 2058 2381 3074 4171 4929 5594 Size: 1048 41 7 323 693 1097 758 665 Cuts at: 5594 6002 962 Size: 408 1706 Fragments arranged by size: 1706 1097 1048 758 693 665 408 323 41 7 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 195 812 1198 1480 1858 2095 2404 2947 3247 Size: 617 386 282 378 237 309 543 300 Cuts at: 3247 195 Size: 3694 Fragments arranged by size: 3694 617 543 386 378 309 300 282 237 BsiEI CG_ry'CG Cuts at: 104 132 2045 3183 3430 4288 4334 5564 104 Size: 28 1913 1138 247 858 46 1230 1286 Fragments arranged by size: 1913 1286 1230 1138 858 247 46 28 BsiHKAI G_wGCw'C Cuts at: 477 1763 2165 3220 3574 3760 4538 4728 5588 Size: 1286 402 1055 354 186 778 190 860 Cuts at: 5588 477 Size: 1635 Fragments arranged by size: 1635 1286 1055 860 778 402 354 190 186 BsmI GAATG_Cn' Cuts at: 771 3297 3328 771 Size: 2526 31 4189 Fragments arranged by size: 4189 2526 31 Bsp1286I G_dGCh'C Cuts at: 189 477 1200 1680 1763 2065 2165 2450 3220 Size: 288 723 480 83 302 100 285 770 Cuts at: 3220 3438 3574 3760 4371 4464 4538 4728 4790 Size: 218 136 186 611 93 74 190 62 Cuts at: 4790 5588 189 Size: 798 1347 Fragments arranged by size: 1347 798 770 723 611 480 302 288 285 218 190 186 136 100 93 83 74 62 BspEI T'CCGG_A Cuts at: 1899 1971 1899 Size: 72 6674 BspHI T'CATG_A Cuts at: 5178 5178 Size: 6746 BspMI ACCTGCnnnn'nnnn_ Cuts at: 143 1796 2820 3092 3796 4010 4312 4693 143 Size: 1653 1024 272 704 214 302 381 2196 Fragments arranged by size: 2196 1653 1024 704 381 302 272 214 BsrBI CCG'CTC Cuts at: 50 5038 5092 6576 6741 50 Size: 4988 54 1484 165 55 Fragments arranged by size: 4988 1484 165 55 54 BsrDI GCAATG_nn' Cuts at: 4658 4658 Size: 6746 BsrFI r'CCGG_y Cuts at: 131 163 218 3182 4744 4925 131 Size: 32 55 2964 1562 181 1952 Fragments arranged by size: 2964 1952 1562 181 55 32 BsrGI T'GTAC_A Cuts at: 1229 1229 Size: 6746 BssSI C'ACGA_G Cuts at: 1429 5017 5725 1429 Size: 3588 708 2450 Fragments arranged by size: 3588 2450 708 BstAPI GCAn_nnn'nTGC Cuts at: 273 2632 3084 4123 273 Size: 2359 452 1039 2896 Fragments arranged by size: 2896 2359 1039 452 BstBI TT'CG_AA Cuts at: 1502 5107 1502 Size: 3605 3141 BstXI CCAn_nnnn'nTGG Cuts at: 915 970 1056 2658 915 Size: 55 86 1602 5003 Fragments arranged by size: 5003 1602 86 55 BstYI r'GATC_y Cuts at: 1 593 1002 1014 1134 3771 4238 4261 4596 Size: 592 409 12 120 2637 467 23 335 Cuts at: 4596 4842 5148 5160 5246 6298 1 Size: 246 306 12 86 1052 449 Fragments arranged by size: 2637 1052 592 467 449 409 335 306 246 120 86 23 12 12 Bsu36I CC'TnA_GG Cuts at: 566 682 823 566 Size: 116 141 6489 Fragments arranged by size: 6489 141 116 BtgI C'CryG_G Cuts at: 118 180 1514 3134 3541 118 Size: 62 1334 1620 407 3323 Fragments arranged by size: 3323 1620 1334 407 62 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 2325 3031 4696 4877 5040 2325 Size: 706 1665 181 163 4031 Fragments arranged by size: 4031 1665 706 181 163 BtsI GCAGTG_nn' Cuts at: 507 1210 1402 1463 1870 2478 3259 3572 3615 Size: 703 192 61 407 608 781 313 43 Cuts at: 3615 3989 507 Size: 374 3264 Fragments arranged by size: 3264 781 703 608 407 374 313 192 61 43 DraI TTT'AAA Cuts at: 3745 3745 Size: 6746 DraIII CAC_nnn'GTG Cuts at: 1195 1221 1727 1195 Size: 26 506 6214 Fragments arranged by size: 6214 506 26 DrdI GACnn_nn'nnGTC Cuts at: 4452 5796 4452 Size: 1344 5402 EaeI y'GGCC_r Cuts at: 129 251 398 1361 1742 2117 2216 2660 3180 Size: 122 147 963 381 375 99 444 520 Cuts at: 3180 3299 4331 4505 4896 4923 6268 129 Size: 119 1032 174 391 27 1345 607 Fragments arranged by size: 1345 1032 963 607 520 444 391 381 375 174 147 122 119 99 27 EagI C'GGCC_G Cuts at: 129 3180 4331 129 Size: 3051 1151 2544 Fragments arranged by size: 3051 2544 1151 EarI CTCTTCn'nnn_ Cuts at: 1946 2155 2522 2576 3164 3319 4769 4979 1946 Size: 209 367 54 588 155 1450 210 3713 Fragments arranged by size: 3713 1450 588 367 210 209 155 54 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 331 1861 4954 5696 5842 6556 331 Size: 1530 3093 742 146 714 521 Fragments arranged by size: 3093 1530 742 714 521 146 EcoICRI GAG'CTC Cuts at: 1761 3758 1761 Size: 1997 4749 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 463 531 631 1057 1122 1652 1942 1962 2087 Size: 68 100 426 65 530 290 20 125 Cuts at: 2087 2179 2194 2353 2392 2623 4571 5003 5356 Size: 92 15 159 39 231 1948 432 353 Cuts at: 5356 6018 463 Size: 662 1191 Fragments arranged by size: 1948 1191 662 530 432 426 353 290 231 159 125 100 92 68 65 39 20 15 EcoNI CCTnn'n_nnAGG Cuts at: 826 1294 826 Size: 468 6278 EcoO109I rG'GnC_Cy Cuts at: 155 185 186 1169 1287 2392 3081 3885 155 Size: 30 1 983 118 1105 689 804 3016 Fragments arranged by size: 3016 1105 983 804 689 118 30 1 EcoRI G'AATT_C Cuts at: 2925 3750 2925 Size: 825 5921 EcoRV GAT'ATC Cuts at: 2715 2715 Size: 6746 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 4765 4765 Size: 6746 FspI TGC'GCA Cuts at: 350 4527 350 Size: 4177 2569 HaeII r_GCGC'y Cuts at: 333 854 1778 2510 4180 4428 5658 6429 333 Size: 521 924 732 1670 248 1230 771 650 Fragments arranged by size: 1670 1230 924 771 732 650 521 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1246 1278 1813 1845 1894 1926 2060 2074 2092 Size: 32 535 32 49 32 134 14 18 Cuts at: 2092 2106 2329 2361 3455 3487 3511 3543 4588 Size: 14 223 32 1094 32 24 32 1045 Cuts at: 4588 4618 4620 4650 1246 Size: 30 2 30 3342 Fragments arranged by size: 3342 1094 1045 535 223 134 49 32 32 32 32 32 32 30 30 24 18 14 14 2 HincII GTy'rAC Cuts at: 1179 1686 2954 3468 3785 1179 Size: 507 1268 514 317 4140 Fragments arranged by size: 4140 1268 514 507 317 KasI G'GCGC_C Cuts at: 1774 2506 4176 4424 1774 Size: 732 1670 248 4096 Fragments arranged by size: 4096 1670 732 248 KpnI G_GTAC'C Cuts at: 3766 3766 Size: 6746 MluI A'CGCG_T Cuts at: 6179 6179 Size: 6746 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 239 524 2072 3534 5505 5689 239 Size: 285 1548 1462 1971 184 1296 Fragments arranged by size: 1971 1548 1462 1296 285 184 MscI TGG'CCA Cuts at: 253 400 1744 2119 2218 2662 4507 253 Size: 147 1344 375 99 444 1845 2492 Fragments arranged by size: 2492 1845 1344 444 375 147 99 MslI CAynn'nnrTG Cuts at: 470 778 913 1901 2278 2366 2656 2723 2918 Size: 308 135 988 377 88 290 67 195 Cuts at: 2918 4735 4862 470 Size: 1817 127 2354 Fragments arranged by size: 2354 1817 988 377 308 290 195 135 127 88 67 MspA1I CmG'CkG Cuts at: 120 182 509 1389 1623 1630 2055 2127 2214 Size: 62 327 880 234 7 425 72 87 Cuts at: 2214 2307 2694 3298 3857 4171 4531 5315 5560 Size: 93 387 604 559 314 360 784 245 Cuts at: 5560 120 Size: 1306 Fragments arranged by size: 1306 880 784 604 559 425 387 360 327 314 245 234 93 87 72 62 7 NaeI GCC'GGC Cuts at: 133 220 3184 4927 133 Size: 87 2964 1743 1952 Fragments arranged by size: 2964 1952 1743 87 NarI GG'CG_CC Cuts at: 1775 2507 4177 4425 1775 Size: 732 1670 248 4096 Fragments arranged by size: 4096 1670 732 248 NdeI CA'TA_TG Cuts at: 2254 2254 Size: 6746 NgoMIV G'CCGG_C Cuts at: 131 218 3182 4925 131 Size: 87 2964 1743 1952 Fragments arranged by size: 2964 1952 1743 87 NsiI A_TGCA'T Cuts at: 3328 3328 Size: 6746 NspI r_CATG'y Cuts at: 1320 1351 2037 2277 2381 3330 3799 4299 5902 Size: 31 686 240 104 949 469 500 1603 Cuts at: 5902 1320 Size: 2164 Fragments arranged by size: 2164 1603 949 686 500 469 240 104 31 PasI CC'CwG_GG Cuts at: 970 970 Size: 6746 PciI A'CATG_T Cuts at: 1347 2273 5898 1347 Size: 926 3625 2195 Fragments arranged by size: 3625 2195 926 PflMI CCAn_nnn'nTGG Cuts at: 2058 2381 2058 Size: 323 6423 PfoI T'CCnGG_A Cuts at: 1919 2388 2936 1919 Size: 469 548 5729 Fragments arranged by size: 5729 548 469 PmeI GTTT'AAAC Cuts at: 3745 3745 Size: 6746 PmlI CAC'GTG Cuts at: 2658 2658 Size: 6746 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 598 630 5192 5224 598 Size: 32 4562 32 2120 Fragments arranged by size: 4562 2120 32 32 PpuMI rG'GwC_Cy Cuts at: 155 2392 3081 155 Size: 2237 689 3820 Fragments arranged by size: 3820 2237 689 PsiI TTA'TAA Cuts at: 3667 3667 Size: 6746 PspOMI G'GGCC_C Cuts at: 185 185 Size: 6746 PstI C_TGCA'G Cuts at: 305 1298 1397 1769 1793 1865 3793 4478 305 Size: 993 99 372 24 72 1928 685 2573 Fragments arranged by size: 2573 1928 993 685 372 99 72 24 PvuI CG_AT'CG Cuts at: 104 2045 104 Size: 1941 4805 PvuII CAG'CTG Cuts at: 509 1389 1630 2055 2214 2694 4171 4531 509 Size: 880 241 425 159 480 1477 360 2724 Fragments arranged by size: 2724 1477 880 480 425 360 241 159 RsrII CG'GwC_CG Cuts at: 4941 4941 Size: 6746 SacI G_AGCT'C Cuts at: 1763 3760 1763 Size: 1997 4749 SacII CC_GC'GG Cuts at: 121 183 121 Size: 62 6684 SalI G'TCGA_C Cuts at: 3783 3783 Size: 6746 SapI GCTCTTCn'nnn_ Cuts at: 1946 3164 4769 4979 1946 Size: 1218 1605 210 3713 Fragments arranged by size: 3713 1605 1218 210 SbfI CC_TGCA'GG Cuts at: 3793 3793 Size: 6746 ScaI AGT'ACT Cuts at: 6263 6263 Size: 6746 SexAI A'CCwGG_T Cuts at: 2394 3482 2394 Size: 1088 5658 SfcI C'TryA_G Cuts at: 33 301 673 1294 1393 1618 1765 1789 1861 Size: 268 372 621 99 225 147 24 72 Cuts at: 1861 3789 4474 5442 5633 33 Size: 1928 685 968 191 1146 Fragments arranged by size: 1928 1146 968 685 621 372 268 225 191 147 99 72 24 SfoI GGC'GCC Cuts at: 1776 2508 4178 4426 1776 Size: 732 1670 248 4096 Fragments arranged by size: 4096 1670 732 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6746 SgrAI Cr'CCGG_yG Cuts at: 163 163 Size: 6746 SmaI CCC'GGG Cuts at: 3768 3768 Size: 6746 SmlI C'TyrA_G Cuts at: 3901 4816 5530 5792 3901 Size: 915 714 262 4855 Fragments arranged by size: 4855 915 714 262 SpeI A'CTAG_T Cuts at: 67 67 Size: 6746 SphI G_CATG'C Cuts at: 2037 3330 3799 4299 2037 Size: 1293 469 500 4484 Fragments arranged by size: 4484 1293 500 469 StyI C'CwwG_G Cuts at: 3530 3650 3880 4234 3530 Size: 120 230 354 6042 Fragments arranged by size: 6042 354 230 120 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 1183 2390 3718 4329 4462 4921 5130 1183 Size: 1207 1328 611 133 459 209 2799 Fragments arranged by size: 2799 1328 1207 611 459 209 133 TatI w'GTAC_w Cuts at: 431 1229 2589 3717 6261 431 Size: 798 1360 1128 2544 916 Fragments arranged by size: 2544 1360 1128 916 798 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 233 265 3011 3043 3526 3558 6263 6295 233 Size: 32 2746 32 483 32 2705 32 684 Fragments arranged by size: 2746 2705 684 483 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 931 1852 4543 931 Size: 921 2691 3134 Fragments arranged by size: 3134 2691 921 XbaI T'CTAG_A Cuts at: 3777 3777 Size: 6746 XcmI CCAnnnn_n'nnnnTGG Cuts at: 540 4241 540 Size: 3701 3045 XmaI C'CCGG_G Cuts at: 3766 3766 Size: 6746 XmnI GAAnn'nnTTC Cuts at: 1498 1498 Size: 6746 ZraI GAC'GTC Cuts at: 3625 3625 Size: 6746 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AfeI AflIII AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstXI BstYI Bsu36I BtgI BtgZI BtsI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NdeI NgoMIV NsiI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PsiI PspOMI PstI PvuI PvuII RsrII SacI SacII SalI SapI SbfI ScaI SexAI SfcI SfoI SgfI SgrAI SmaI SmlI SpeI SphI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI XmnI ZraI Enzymes that do not cut: AflII AgeI AscI AvrII BaeI BbvCI BmtI Bpu10I BsiWI BsmBI BssHII BstEII BstZ17I ClaI CspCI FseI FspAI HindIII HpaI MfeI NcoI NheI NotI NruI PacI PshAI PspXI PsrI SanDI SfiI SnaBI SrfI SspI StuI SwaI XhoI