Result of FASTA (omim) for
pF1KA1270
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1270, 985 aa
1>>>pF1KA1270 985 - 985 aa - 985 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5674+/-0.000378; mu= 20.4196+/- 0.024
mean_var=76.1417+/-15.634, 0's: 0 Z-trim(113.2): 20 B-trim: 995 in 1/54
Lambda= 0.146982
statistics sampled from 22468 (22487) to 22468 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.264), width: 16
Scan time: 14.620
The best scores are: opt bits E(85289)
NP_065796 (OMIM: 612035,614096,615889) alanine--tR ( 985) 6562 1401.6 0
XP_011513066 (OMIM: 612035,614096,615889) PREDICTE ( 955) 6215 1328.1 0
XP_005249302 (OMIM: 612035,614096,615889) PREDICTE ( 888) 4141 888.2 0
XP_016866601 (OMIM: 612035,614096,615889) PREDICTE ( 555) 3623 778.3 0
NP_001596 (OMIM: 601065,613287,616339) alanine--tR ( 968) 2777 599.0 3.8e-170
>>NP_065796 (OMIM: 612035,614096,615889) alanine--tRNA l (985 aa)
initn: 6562 init1: 6562 opt: 6562 Z-score: 7513.1 bits: 1401.6 E(85289): 0
Smith-Waterman score: 6562; 100.0% identity (100.0% similar) in 985 aa overlap (1-985:1-985)
10 20 30 40 50 60
pF1KA1 MAASVAAAARRLRRAIRRSPAWRGLSHRPLSSEPPAAKASAVRAAFLNFFRDRHGHRLVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MAASVAAAARRLRRAIRRSPAWRGLSHRPLSSEPPAAKASAVRAAFLNFFRDRHGHRLVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGHHNDLED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGHHNDLED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 VGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEERLWISYFDGDPKAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 VGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEERLWISYFDGDPKAGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 DPDLETRDIWLSLGVPASRVLSFGPQENFWEMGDTGPCGPCTEIHYDLAGGVGAPQLVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 DPDLETRDIWLSLGVPASRVLSFGPQENFWEMGDTGPCGPCTEIHYDLAGGVGAPQLVEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 WNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 WNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQGC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 RAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCISDGVFPGMSGPPLVLRRILRRAVRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCISDGVFPGMSGPPLVLRRILRRAVRF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 SMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSAQIANLVSEDEAAFLASLERGRRIID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSAQIANLVSEDEAAFLASLERGRRIID
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 RTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVELMLEEKGVQLDSAGLERLAQEEAQHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVELMLEEKGVQLDSAGLERLAQEEAQHR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 ARQAEPVQKQGLWLDVHALGELQRQGVPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ARQAEPVQKQGLWLDVHALGELQRQGVPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 EDGTAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 EDGTAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 LHEAVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LHEAVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QLRLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 QLRLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 VRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 VRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 VTGEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 VTGEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQ
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 RRELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RRELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVV
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 RQLCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RQLCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSRVV
910 920 930 940 950 960
970 980
pF1KA1 AQGTGSTTDLEAALSIAQTYALSQL
:::::::::::::::::::::::::
NP_065 AQGTGSTTDLEAALSIAQTYALSQL
970 980
>>XP_011513066 (OMIM: 612035,614096,615889) PREDICTED: a (955 aa)
initn: 6211 init1: 6211 opt: 6215 Z-score: 7115.7 bits: 1328.1 E(85289): 0
Smith-Waterman score: 6215; 98.6% identity (99.2% similar) in 945 aa overlap (1-942:1-945)
10 20 30 40 50 60
pF1KA1 MAASVAAAARRLRRAIRRSPAWRGLSHRPLSSEPPAAKASAVRAAFLNFFRDRHGHRLVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAASVAAAARRLRRAIRRSPAWRGLSHRPLSSEPPAAKASAVRAAFLNFFRDRHGHRLVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGHHNDLED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGHHNDLED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 VGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEERLWISYFDGDPKAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEERLWISYFDGDPKAGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 DPDLETRDIWLSLGVPASRVLSFGPQENFWEMGDTGPCGPCTEIHYDLAGGVGAPQLVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPDLETRDIWLSLGVPASRVLSFGPQENFWEMGDTGPCGPCTEIHYDLAGGVGAPQLVEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 WNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQGC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 RAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCISDGVFPGMSGPPLVLRRILRRAVRF
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
XP_011 RAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCISDGIFPGMSGPPLVLRRILRRAVRF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 SMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSAQIANLVSEDEAAFLASLERGRRIID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSAQIANLVSEDEAAFLASLERGRRIID
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 RTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVELMLEEKGVQLDSAGLERLAQEEAQHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVELMLEEKGVQLDSAGLERLAQEEAQHR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 ARQAEPVQKQGLWLDVHALGELQRQGVPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARQAEPVQKQGLWLDVHALGELQRQGVPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 EDGTAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDGTAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 LHEAVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHEAVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QLRLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLRLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 VRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 VTGEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTGEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQ
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 RRELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVV
850 860 870 880 890 900
910 920 930 940 950
pF1KA1 RQLCEQAPSTSVLLLSPQPMGKVLCACQVAQ---GAMPTFTAEAWALAVCSHMGGKAWGS
::::::::::::::::::::::::::::::: : .. ..:
XP_011 RQLCEQAPSTSVLLLSPQPMGKVLCACQVAQEIWGPNHILSRQGWKRVWHRAWTV
910 920 930 940 950
960 970 980
pF1KA1 RVVAQGTGSTTDLEAALSIAQTYALSQL
>>XP_005249302 (OMIM: 612035,614096,615889) PREDICTED: a (888 aa)
initn: 5886 init1: 4141 opt: 4141 Z-score: 4739.3 bits: 888.2 E(85289): 0
Smith-Waterman score: 5696; 90.2% identity (90.2% similar) in 985 aa overlap (1-985:1-888)
10 20 30 40 50 60
pF1KA1 MAASVAAAARRLRRAIRRSPAWRGLSHRPLSSEPPAAKASAVRAAFLNFFRDRHGHRLVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAASVAAAARRLRRAIRRSPAWRGLSHRPLSSEPPAAKASAVRAAFLNFFRDRHGHRLVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGHHNDLED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGHHNDLED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 VGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEERLWISYFDGDPKAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEERLWISYFDGDPKAGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 DPDLETRDIWLSLGVPASRVLSFGPQENFWEMGDTGPCGPCTEIHYDLAGGVGAPQLVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DPDLETRDIWLSLGVPASRVLSFGPQENFWEMGDTGPCGPCTEIHYDLAGGVGAPQLVEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 WNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQGC
::::::::::
XP_005 WNLVFMQHNR--------------------------------------------------
250
310 320 330 340 350 360
pF1KA1 RAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCISDGVFPGMSGPPLVLRRILRRAVRF
:::::::::::::
XP_005 -----------------------------------------------LVLRRILRRAVRF
260
370 380 390 400 410 420
pF1KA1 SMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSAQIANLVSEDEAAFLASLERGRRIID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSAQIANLVSEDEAAFLASLERGRRIID
270 280 290 300 310 320
430 440 450 460 470 480
pF1KA1 RTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVELMLEEKGVQLDSAGLERLAQEEAQHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVELMLEEKGVQLDSAGLERLAQEEAQHR
330 340 350 360 370 380
490 500 510 520 530 540
pF1KA1 ARQAEPVQKQGLWLDVHALGELQRQGVPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ARQAEPVQKQGLWLDVHALGELQRQGVPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYT
390 400 410 420 430 440
550 560 570 580 590 600
pF1KA1 EDGTAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDGTAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFI
450 460 470 480 490 500
610 620 630 640 650 660
pF1KA1 LHEAVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHEAVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPE
510 520 530 540 550 560
670 680 690 700 710 720
pF1KA1 QLRLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLRLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDP
570 580 590 600 610 620
730 740 750 760 770 780
pF1KA1 VRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLA
630 640 650 660 670 680
790 800 810 820 830 840
pF1KA1 VTGEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VTGEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQ
690 700 710 720 730 740
850 860 870 880 890 900
pF1KA1 RRELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RRELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVV
750 760 770 780 790 800
910 920 930 940 950 960
pF1KA1 RQLCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RQLCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSRVV
810 820 830 840 850 860
970 980
pF1KA1 AQGTGSTTDLEAALSIAQTYALSQL
:::::::::::::::::::::::::
XP_005 AQGTGSTTDLEAALSIAQTYALSQL
870 880
>>XP_016866601 (OMIM: 612035,614096,615889) PREDICTED: a (555 aa)
initn: 3623 init1: 3623 opt: 3623 Z-score: 4148.7 bits: 778.3 E(85289): 0
Smith-Waterman score: 3623; 100.0% identity (100.0% similar) in 555 aa overlap (431-985:1-555)
410 420 430 440 450 460
pF1KA1 VSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVELMLEEK
::::::::::::::::::::::::::::::
XP_016 MFPAEVAWSLSLCGDLGLPLDMVELMLEEK
10 20 30
470 480 490 500 510 520
pF1KA1 GVQLDSAGLERLAQEEAQHRARQAEPVQKQGLWLDVHALGELQRQGVPPTDDSPKYNYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVQLDSAGLERLAQEEAQHRARQAEPVQKQGLWLDVHALGELQRQGVPPTDDSPKYNYSL
40 50 60 70 80 90
530 540 550 560 570 580
pF1KA1 RPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVR
100 110 120 130 140 150
590 600 610 620 630 640
pF1KA1 AGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNW
160 170 180 190 200 210
650 660 670 680 690 700
pF1KA1 ALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVP
220 230 240 250 260 270
710 720 730 740 750 760
pF1KA1 LALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAV
280 290 300 310 320 330
770 780 790 800 810 820
pF1KA1 GDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRL
340 350 360 370 380 390
830 840 850 860 870 880
pF1KA1 SKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSK
400 410 420 430 440 450
890 900 910 920 930 940
pF1KA1 GPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAE
460 470 480 490 500 510
950 960 970 980
pF1KA1 AWALAVCSHMGGKAWGSRVVAQGTGSTTDLEAALSIAQTYALSQL
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 AWALAVCSHMGGKAWGSRVVAQGTGSTTDLEAALSIAQTYALSQL
520 530 540 550
>>NP_001596 (OMIM: 601065,613287,616339) alanine--tRNA l (968 aa)
initn: 1952 init1: 783 opt: 2777 Z-score: 3175.6 bits: 599.0 E(85289): 3.8e-170
Smith-Waterman score: 2777; 46.0% identity (72.4% similar) in 970 aa overlap (39-985:7-963)
10 20 30 40 50 60
pF1KA1 ARRLRRAIRRSPAWRGLSHRPLSSEPPAAKASAVRAAFLNFFRDRHGHRLVPSASVRPRG
:: .: :..::. :. : : :... :
NP_001 MDSTLTASEIRQRFIDFFK-RNEHTYVHSSATIPLD
10 20 30
70 80 90 100 110 120
pF1KA1 DPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGHHNDLEDVGRDLSHH
::.:::.::::::::::::.:.:: :: . :.::.:::.::::.::::.:::.:. ::
NP_001 DPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKDVYHH
40 50 60 70 80 90
130 140 150 160 170 180
pF1KA1 TFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEERLWISYFDGDPKAGLDPDLETRD
:::::::.:.:: .:::: ::.:: ::::: .::: :::...:: :: :::. ::: ..
NP_001 TFFEMLGSWSFG-DYFKELACKMALELLTQEFGIPIERLYVTYFGGDEAAGLEADLECKQ
100 110 120 130 140 150
190 200 210 220 230 240
pF1KA1 IWLSLGVPASRVLSFGPQENFWEMGDTGPCGPCTEIHYDLAGGVGA--------PQLVEL
:: .::. ...: . ..::::::::::::::.::::: :: : :...:.
NP_001 IWQNLGLDDTKILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAAHLVNQDDPNVLEI
160 170 180 190 200 210
250 260 270 280 290 300
pF1KA1 WNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQGC
:::::.:.:::::: :.:::.. .::::::::::.:::.: :.:::::: : ..:::.:
NP_001 WNLVFIQYNREADGILKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGT
220 230 240 250 260 270
310 320 330 340 350 360
pF1KA1 RAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCISDGVFPGMSGPPLVLRRILRRAVRF
: :: :.::. : : ::::.::: ::..: ..:: : .: :::::::::::.
NP_001 GARPYTGKVGAEDADGIDMAYRVLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRY
280 290 300 310 320 330
370 380 390 400 410 420
pF1KA1 SMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSAQIANLVSEDEAAFLASLERGRRIID
. : :.: ::...:: :::..::::.:::... .. ....:.:. :: .: :::::.:
NP_001 AHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILD
340 350 360 370 380 390
430 440 450 460 470
pF1KA1 RTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVELMLEEKGVQLDSAGLE---RLAQEEA
: ...:: : .:...:: : :.:.:.. :. ::::. .: :.: .::: ..
NP_001 RKIQSLGDSKTIPGDTAWLLY--DTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKS
400 410 420 430 440 450
480 490 500 510 520 530
pF1KA1 QHRARQAEPVQKQGLWLDVHALGELQRQGVPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQ
: .. .: . . ::..:. ::. .:. ::::::::: : :::: : . : :.
NP_001 QGKGAGGEDL----IMLDIYAIEELRARGLEVTDDSPKYNYHLDSSGSYVFENTVATVMA
460 470 480 490 500
540 550 560 570 580 590
pF1KA1 LYTEDGTAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVRA--GQED-VLFPVARAQ
: : : :. ::.::..::.: :::::::: :.::::.. ..:: . : : ::
NP_001 LRREK-MFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQ
510 520 530 540 550 560
600 610 620 630 640 650
pF1KA1 VCGGFILHEAVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQG
: ::..:: .. :..:::: : .:: : :..:::::.::.:::..:: . .:.:
NP_001 VRGGYVLHIGTIYGDLKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLGEA-DQKG
570 580 590 600 610 620
660 670 680 690 700 710
pF1KA1 SHLNPEQLRLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSL-
: . :..::.: :.. .. .:.. .:. ..: . .::: .. ::: . . :::..
NP_001 SLVAPDRLRFDFTAKGAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVF
630 640 650 660 670 680
720 730 740 750 760 770
pF1KA1 DEVYPDPVRVVSVGVPVAHALD-PASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLS
::.:::::::::.::::.. :: :.. :. ::::.: :::: .. .: .::. .. ..
NP_001 DETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIA
690 700 710 720 730 740
780 790 800 810 820 830
pF1KA1 KGTTRLLAVTGEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVE
:: :..:::: .::.: . ..:: . ... ... . .. : :.: ::.
NP_001 KGIRRIVAVTGAEAQKALRKAESLKKCLSVMEAKVKAQTAPNKDVQREIADLG---EALA
750 760 770 780 790 800
840 850 860 870 880
pF1KA1 TAVMPQWQRRELLATVKMLQRRANTAIRKLQMG---QAAKKTQELLERHSKGPLIV-DTV
:::.::::. :: :.: :.. . : . .. .::..... . . ::.. .
NP_001 TAVIPQWQKDELRETLKSLKKVMDDLDRASKADVQKRVLEKTKQFIDSNPNQPLVILEME
810 820 830 840 850 860
890 900 910 920 930 940
pF1KA1 SAESLSVLVKVVRQLCEQAPSTSVLLLS-PQPMGKVLCACQVAQGAMPT-FTAEAWALAV
:. : ..: .... . ..:.::..:.. . ::. : ::: :.: . : :. :
NP_001 SGASAKALNEALKLFKMHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQV
870 880 890 900 910 920
950 960 970 980
pF1KA1 CSHMGGKAWGSRVVAQGTGSTTD-LEAALSIAQTYALSQL
. : ::. :. : ::.::... :. ::..: ..: .:
NP_001 SGLMDGKGGGKDVSAQATGKNVGCLQEALQLATSFAQLRLGDVKN
930 940 950 960
985 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:26:45 2016 done: Fri Nov 4 01:26:47 2016
Total Scan time: 14.620 Total Display time: 0.180
Function used was FASTA [36.3.4 Apr, 2011]