Result of FASTA (ccds) for
pF1KA1287
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1287, 1204 aa
1>>>pF1KA1287 1204 - 1204 aa - 1204 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8262+/-0.00119; mu= 18.9334+/- 0.071
mean_var=62.8375+/-12.561, 0's: 0 Z-trim(100.8): 34 B-trim: 0 in 0/50
Lambda= 0.161795
statistics sampled from 6239 (6249) to 6239 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.54), E-opt: 0.2 (0.192), width: 16
Scan time: 4.080
The best scores are: opt bits E(32554)
CCDS45750.1 INTS2 gene_id:57508|Hs108|chr17 (1204) 7828 1836.8 0
CCDS82181.1 INTS2 gene_id:57508|Hs108|chr17 (1196) 7778 1825.2 0
>>CCDS45750.1 INTS2 gene_id:57508|Hs108|chr17 (1204 aa)
initn: 7828 init1: 7828 opt: 7828 Z-score: 9861.9 bits: 1836.8 E(32554): 0
Smith-Waterman score: 7828; 99.9% identity (100.0% similar) in 1204 aa overlap (1-1204:1-1204)
10 20 30 40 50 60
pF1KA1 MKDQQTVIMTECTSLQFVSPFAFEAMQKVDVVCLASLSDPELRLLLPCLVRMALCAPADQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MKDQQTVIMTECTSLQFVSPFAFEAMQKVDVVCLASLSDPELRLLLPCLVRMALCAPADQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SQSWAQDKKLILRLLSGVEAVNSIVALLSVDFHALEQDASKEQQLRHKLGGGSGESILVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SQSWAQDKKLILRLLSGVEAVNSIVALLSVDFHALEQDASKEQQLRHKLGGGSGESILVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 QLQHGLTLEFEHSDSPRRLRLVLSELLAIMNKVSESNGEFFFKSSELFESPVYLEEAADV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QLQHGLTLEFEHSDSPRRLRLVLSELLAIMNKVSESNGEFFFKSSELFESPVYLEEAADV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 LCILQAELPSLLPIVDVAEALLHVRNGAWFLCLLVANVPDSFNEVCRGLIKNGERQDEES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LCILQAELPSLLPIVDVAEALLHVRNGAWFLCLLVANVPDSFNEVCRGLIKNGERQDEES
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 LGGRRRTDALRFLCKMNPSQALKVRGMVVEECHLPGLGVALTLDHTKNEACEDGVSDLVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGGRRRTDALRFLCKMNPSQALKVRGMVVEECHLPGLGVALTLDHTKNEACEDGVSDLVC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 FVSGLLLGTNAKVRTWFGTFIRNGQQRKRETSSSVLWQMRRQLLLELMGILPTVRSTRIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FVSGLLLGTNAKVRTWFGTFIRNGQQRKRETSSSVLWQMRRQLLLELMGILPTVRSTRIV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 EEADVDMEPNVSVYSGLKEEHVVKASALLRLYCALMGIAGLKPTEEEAEQLLQLMTSRPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EEADVDMEPNVSVYSGLKEEHVVKASALLRLYCALMGIAGLKPTEEEAEQLLQLMTSRPP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 ATPAGVRFVSLSFCMLLAFSTLVSTPEQEQLMVVWLSWMIKEEAYFESTSGVSASFGEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ATPAGVRFVSLSFCMLLAFSTLVSTPEQEQLMVVWLSWMIKEEAYFESTSGVSASFGEML
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LLVAMYFHSNQLSAIIDLVCSTLGMKIVIKPSSLSRMKTIFTQEIFTEQVVTAHAVRVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLVAMYFHSNQLSAIIDLVCSTLGMKIVIKPSSLSRMKTIFTQEIFTEQVVTAHAVRVPV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 TSNLSANITGFLPIHCIYQLLRSRSFTKHKVSIKDWIYRQLCETSTPLHPQLLPLIDVYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TSNLSANITGFLPIHCIYQLLRSRSFTKHKVSIKDWIYRQLCETSTPLHPQLLPLIDVYI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 NSILTPASKSNPEATNQPVTEQEILNIFQGVIGGDNIRLNQRFSITAQLLVLYYILSYEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NSILTPASKSNPEATNQPVTEQEILNIFQGVIGGDNIRLNQRFSITAQLLVLYYILSYEE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 ALLANTKTLAAMQRKPKSYSSSLMDQIPIKFLIRQAQGLQQELGGLHSALLRLLATNYPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALLANTKTLAAMQRKPKSYSSSLMDQIPIKFLIRQAQGLQQELGGLHSALLRLLATNYPH
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 LCIVDDWICEEEITGTDALLRRMLLTNNAKNHSPKQLQEAFSAVPVNHTQVMQIIEHLTL
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS45 LCIVDDWICEEEITGTDALLRRMLLTNNAKNHSPKQLQEAFSAVPVNNTQVMQIIEHLTL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 LSASELIPYAEVLTSNMSQLLNSGVPRRILQTVNKLWMVLNTVMPRRLWVMTVNALQPSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LSASELIPYAEVLTSNMSQLLNSGVPRRILQTVNKLWMVLNTVMPRRLWVMTVNALQPSI
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 KFVRQQKYTQNDLMIDPLIVLRCDQRVHRCPPLMDITLHMLNGYLLASKAYLSAHLKETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KFVRQQKYTQNDLMIDPLIVLRCDQRVHRCPPLMDITLHMLNGYLLASKAYLSAHLKETE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 QDRPSQNNTIGLVGQTDAPEVTREELKNALLAAQDSAAVQILLEICLPTEEEKANGVNPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QDRPSQNNTIGLVGQTDAPEVTREELKNALLAAQDSAAVQILLEICLPTEEEKANGVNPD
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 SLLRNVQSVITTSAPNKGMEEGEDNLLCNLREVQCLICCLLHQMYIADPNIAKLVHFQGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SLLRNVQSVITTSAPNKGMEEGEDNLLCNLREVQCLICCLLHQMYIADPNIAKLVHFQGY
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 PCELLPLTVAGIPSMHICLDFIPELIAQPELEKQIFAIQLLSHLCIQYALPKSLSVARLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PCELLPLTVAGIPSMHICLDFIPELIAQPELEKQIFAIQLLSHLCIQYALPKSLSVARLA
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA1 VNVMGTLLTVLTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCASDVATQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VNVMGTLLTVLTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCASDVATQT
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA1 RDIDPIITRLQQIKEKPSGWSQICKDSSYKNGSRDTGSMDPDVQLCHCIERTVIEIINMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RDIDPIITRLQQIKEKPSGWSQICKDSSYKNGSRDTGSMDPDVQLCHCIERTVIEIINMS
1150 1160 1170 1180 1190 1200
pF1KA1 VSGI
::::
CCDS45 VSGI
>>CCDS82181.1 INTS2 gene_id:57508|Hs108|chr17 (1196 aa)
initn: 7778 init1: 7778 opt: 7778 Z-score: 9798.9 bits: 1825.2 E(32554): 0
Smith-Waterman score: 7778; 99.9% identity (100.0% similar) in 1196 aa overlap (9-1204:1-1196)
10 20 30 40 50 60
pF1KA1 MKDQQTVIMTECTSLQFVSPFAFEAMQKVDVVCLASLSDPELRLLLPCLVRMALCAPADQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MTECTSLQFVSPFAFEAMQKVDVVCLASLSDPELRLLLPCLVRMALCAPADQ
10 20 30 40 50
70 80 90 100 110 120
pF1KA1 SQSWAQDKKLILRLLSGVEAVNSIVALLSVDFHALEQDASKEQQLRHKLGGGSGESILVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SQSWAQDKKLILRLLSGVEAVNSIVALLSVDFHALEQDASKEQQLRHKLGGGSGESILVS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KA1 QLQHGLTLEFEHSDSPRRLRLVLSELLAIMNKVSESNGEFFFKSSELFESPVYLEEAADV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QLQHGLTLEFEHSDSPRRLRLVLSELLAIMNKVSESNGEFFFKSSELFESPVYLEEAADV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KA1 LCILQAELPSLLPIVDVAEALLHVRNGAWFLCLLVANVPDSFNEVCRGLIKNGERQDEES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LCILQAELPSLLPIVDVAEALLHVRNGAWFLCLLVANVPDSFNEVCRGLIKNGERQDEES
180 190 200 210 220 230
250 260 270 280 290 300
pF1KA1 LGGRRRTDALRFLCKMNPSQALKVRGMVVEECHLPGLGVALTLDHTKNEACEDGVSDLVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LGGRRRTDALRFLCKMNPSQALKVRGMVVEECHLPGLGVALTLDHTKNEACEDGVSDLVC
240 250 260 270 280 290
310 320 330 340 350 360
pF1KA1 FVSGLLLGTNAKVRTWFGTFIRNGQQRKRETSSSVLWQMRRQLLLELMGILPTVRSTRIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FVSGLLLGTNAKVRTWFGTFIRNGQQRKRETSSSVLWQMRRQLLLELMGILPTVRSTRIV
300 310 320 330 340 350
370 380 390 400 410 420
pF1KA1 EEADVDMEPNVSVYSGLKEEHVVKASALLRLYCALMGIAGLKPTEEEAEQLLQLMTSRPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EEADVDMEPNVSVYSGLKEEHVVKASALLRLYCALMGIAGLKPTEEEAEQLLQLMTSRPP
360 370 380 390 400 410
430 440 450 460 470 480
pF1KA1 ATPAGVRFVSLSFCMLLAFSTLVSTPEQEQLMVVWLSWMIKEEAYFESTSGVSASFGEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ATPAGVRFVSLSFCMLLAFSTLVSTPEQEQLMVVWLSWMIKEEAYFESTSGVSASFGEML
420 430 440 450 460 470
490 500 510 520 530 540
pF1KA1 LLVAMYFHSNQLSAIIDLVCSTLGMKIVIKPSSLSRMKTIFTQEIFTEQVVTAHAVRVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LLVAMYFHSNQLSAIIDLVCSTLGMKIVIKPSSLSRMKTIFTQEIFTEQVVTAHAVRVPV
480 490 500 510 520 530
550 560 570 580 590 600
pF1KA1 TSNLSANITGFLPIHCIYQLLRSRSFTKHKVSIKDWIYRQLCETSTPLHPQLLPLIDVYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TSNLSANITGFLPIHCIYQLLRSRSFTKHKVSIKDWIYRQLCETSTPLHPQLLPLIDVYI
540 550 560 570 580 590
610 620 630 640 650 660
pF1KA1 NSILTPASKSNPEATNQPVTEQEILNIFQGVIGGDNIRLNQRFSITAQLLVLYYILSYEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NSILTPASKSNPEATNQPVTEQEILNIFQGVIGGDNIRLNQRFSITAQLLVLYYILSYEE
600 610 620 630 640 650
670 680 690 700 710 720
pF1KA1 ALLANTKTLAAMQRKPKSYSSSLMDQIPIKFLIRQAQGLQQELGGLHSALLRLLATNYPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ALLANTKTLAAMQRKPKSYSSSLMDQIPIKFLIRQAQGLQQELGGLHSALLRLLATNYPH
660 670 680 690 700 710
730 740 750 760 770 780
pF1KA1 LCIVDDWICEEEITGTDALLRRMLLTNNAKNHSPKQLQEAFSAVPVNHTQVMQIIEHLTL
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS82 LCIVDDWICEEEITGTDALLRRMLLTNNAKNHSPKQLQEAFSAVPVNNTQVMQIIEHLTL
720 730 740 750 760 770
790 800 810 820 830 840
pF1KA1 LSASELIPYAEVLTSNMSQLLNSGVPRRILQTVNKLWMVLNTVMPRRLWVMTVNALQPSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LSASELIPYAEVLTSNMSQLLNSGVPRRILQTVNKLWMVLNTVMPRRLWVMTVNALQPSI
780 790 800 810 820 830
850 860 870 880 890 900
pF1KA1 KFVRQQKYTQNDLMIDPLIVLRCDQRVHRCPPLMDITLHMLNGYLLASKAYLSAHLKETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KFVRQQKYTQNDLMIDPLIVLRCDQRVHRCPPLMDITLHMLNGYLLASKAYLSAHLKETE
840 850 860 870 880 890
910 920 930 940 950 960
pF1KA1 QDRPSQNNTIGLVGQTDAPEVTREELKNALLAAQDSAAVQILLEICLPTEEEKANGVNPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QDRPSQNNTIGLVGQTDAPEVTREELKNALLAAQDSAAVQILLEICLPTEEEKANGVNPD
900 910 920 930 940 950
970 980 990 1000 1010 1020
pF1KA1 SLLRNVQSVITTSAPNKGMEEGEDNLLCNLREVQCLICCLLHQMYIADPNIAKLVHFQGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SLLRNVQSVITTSAPNKGMEEGEDNLLCNLREVQCLICCLLHQMYIADPNIAKLVHFQGY
960 970 980 990 1000 1010
1030 1040 1050 1060 1070 1080
pF1KA1 PCELLPLTVAGIPSMHICLDFIPELIAQPELEKQIFAIQLLSHLCIQYALPKSLSVARLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PCELLPLTVAGIPSMHICLDFIPELIAQPELEKQIFAIQLLSHLCIQYALPKSLSVARLA
1020 1030 1040 1050 1060 1070
1090 1100 1110 1120 1130 1140
pF1KA1 VNVMGTLLTVLTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCASDVATQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VNVMGTLLTVLTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCASDVATQT
1080 1090 1100 1110 1120 1130
1150 1160 1170 1180 1190 1200
pF1KA1 RDIDPIITRLQQIKEKPSGWSQICKDSSYKNGSRDTGSMDPDVQLCHCIERTVIEIINMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RDIDPIITRLQQIKEKPSGWSQICKDSSYKNGSRDTGSMDPDVQLCHCIERTVIEIINMS
1140 1150 1160 1170 1180 1190
pF1KA1 VSGI
::::
CCDS82 VSGI
1204 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:57:33 2016 done: Thu Nov 3 19:57:34 2016
Total Scan time: 4.080 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]