FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1332, 717 aa
  1>>>pF1KA1332 717 - 717 aa - 717 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9101+/-0.000976; mu= 0.1687+/- 0.059
 mean_var=264.0940+/-52.760, 0's: 0 Z-trim(114.0): 19  B-trim: 0 in 0/54
 Lambda= 0.078921
 statistics sampled from 14572 (14586) to 14572 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.448), width:  16
 Scan time:  4.710

The best scores are:                                      opt bits E(32554)
CCDS30613.1 FBXO42 gene_id:54455|Hs108|chr1        ( 717) 5013 584.3 2.1e-166


>>CCDS30613.1 FBXO42 gene_id:54455|Hs108|chr1             (717 aa)
 initn: 5013 init1: 5013 opt: 5013  Z-score: 3100.8  bits: 584.3 E(32554): 2.1e-166
Smith-Waterman score: 5013; 100.0% identity (100.0% similar) in 717 aa overlap (1-717:1-717)

               10        20        30        40        50        60
pF1KA1 MASSSDSEDDSFMAVDQEETVLEGTMDQDEEPHPVLEAEETRHNRSMSELPEEVLEYILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MASSSDSEDDSFMAVDQEETVLEGTMDQDEEPHPVLEAEETRHNRSMSELPEEVLEYILS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 FLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 SHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 VYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 DDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 GCGGPNALFKDAWLLHMHSGPWAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQAPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GCGGPNALFKDAWLLHMHSGPWAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQAPSG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 RAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 SGSREGSLSPARGDGSPILNGGSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SGSREGSLSPARGDGSPILNGGSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 SLAPRRGSLPDQKDLRLGSIDLNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SLAPRRGSLPDQKDLRLGSIDLNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 PHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 IPRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IPRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRV
              610       620       630       640       650       660

              670       680       690       700       710       
pF1KA1 KWKVFNSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KWKVFNSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR
              670       680       690       700       710       




717 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:59:33 2016 done: Wed Nov  2 20:59:34 2016
 Total Scan time:  4.710 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]