Result of FASTA (omim) for
pF1KA1332
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1332, 717 aa
1>>>pF1KA1332 717 - 717 aa - 717 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.2158+/-0.000396; mu= -1.3273+/- 0.025
mean_var=298.1782+/-60.214, 0's: 0 Z-trim(121.6): 26 B-trim: 23 in 1/55
Lambda= 0.074274
statistics sampled from 38525 (38552) to 38525 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.452), width: 16
Scan time: 11.770
The best scores are: opt bits E(85289)
XP_006710761 (OMIM: 609109) PREDICTED: F-box only ( 717) 5013 551.1 5.7e-156
NP_061867 (OMIM: 609109) F-box only protein 42 [Ho ( 717) 5013 551.1 5.7e-156
XP_016856991 (OMIM: 609109) PREDICTED: F-box only ( 486) 3375 375.4 2.9e-103
XP_016856992 (OMIM: 609109) PREDICTED: F-box only ( 486) 3375 375.4 2.9e-103
>>XP_006710761 (OMIM: 609109) PREDICTED: F-box only prot (717 aa)
initn: 5013 init1: 5013 opt: 5013 Z-score: 2921.1 bits: 551.1 E(85289): 5.7e-156
Smith-Waterman score: 5013; 100.0% identity (100.0% similar) in 717 aa overlap (1-717:1-717)
10 20 30 40 50 60
pF1KA1 MASSSDSEDDSFMAVDQEETVLEGTMDQDEEPHPVLEAEETRHNRSMSELPEEVLEYILS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MASSSDSEDDSFMAVDQEETVLEGTMDQDEEPHPVLEAEETRHNRSMSELPEEVLEYILS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 FLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 SHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 VYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 DDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 GCGGPNALFKDAWLLHMHSGPWAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQAPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GCGGPNALFKDAWLLHMHSGPWAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQAPSG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 RAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 SGSREGSLSPARGDGSPILNGGSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGSREGSLSPARGDGSPILNGGSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 SLAPRRGSLPDQKDLRLGSIDLNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLAPRRGSLPDQKDLRLGSIDLNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 PHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 IPRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IPRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRV
610 620 630 640 650 660
670 680 690 700 710
pF1KA1 KWKVFNSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KWKVFNSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR
670 680 690 700 710
>>NP_061867 (OMIM: 609109) F-box only protein 42 [Homo s (717 aa)
initn: 5013 init1: 5013 opt: 5013 Z-score: 2921.1 bits: 551.1 E(85289): 5.7e-156
Smith-Waterman score: 5013; 100.0% identity (100.0% similar) in 717 aa overlap (1-717:1-717)
10 20 30 40 50 60
pF1KA1 MASSSDSEDDSFMAVDQEETVLEGTMDQDEEPHPVLEAEETRHNRSMSELPEEVLEYILS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MASSSDSEDDSFMAVDQEETVLEGTMDQDEEPHPVLEAEETRHNRSMSELPEEVLEYILS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 FLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 FLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 SHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 VYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 DDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 GCGGPNALFKDAWLLHMHSGPWAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQAPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 GCGGPNALFKDAWLLHMHSGPWAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQAPSG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 RAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 SGSREGSLSPARGDGSPILNGGSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SGSREGSLSPARGDGSPILNGGSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 SLAPRRGSLPDQKDLRLGSIDLNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SLAPRRGSLPDQKDLRLGSIDLNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 PHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 IPRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 IPRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRV
610 620 630 640 650 660
670 680 690 700 710
pF1KA1 KWKVFNSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 KWKVFNSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR
670 680 690 700 710
>>XP_016856991 (OMIM: 609109) PREDICTED: F-box only prot (486 aa)
initn: 3375 init1: 3375 opt: 3375 Z-score: 1974.9 bits: 375.4 E(85289): 2.9e-103
Smith-Waterman score: 3375; 100.0% identity (100.0% similar) in 486 aa overlap (232-717:1-486)
210 220 230 240 250 260
pF1KA1 QPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQMSNDVW
::::::::::::::::::::::::::::::
XP_016 MAGHSSCVIDDKMIVFGGSLGSRQMSNDVW
10 20 30
270 280 290 300 310 320
pF1KA1 VLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGP
40 50 60 70 80 90
330 340 350 360 370 380
pF1KA1 WAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPA
100 110 120 130 140 150
390 400 410 420 430 440
pF1KA1 LVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNG
160 170 180 190 200 210
450 460 470 480 490 500
pF1KA1 GSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGLSLAPRRGSLPDQKDLRLGSID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGLSLAPRRGSLPDQKDLRLGSID
220 230 240 250 260 270
510 520 530 540 550 560
pF1KA1 LNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLE
280 290 300 310 320 330
570 580 590 600 610 620
pF1KA1 AIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIARRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIARRL
340 350 360 370 380 390
630 640 650 660 670 680
pF1KA1 GHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFNSSSVVGPPETSLHTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFNSSSVVGPPETSLHTV
400 410 420 430 440 450
690 700 710
pF1KA1 VQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR
::::::::::::::::::::::::::::::::::::
XP_016 VQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR
460 470 480
>>XP_016856992 (OMIM: 609109) PREDICTED: F-box only prot (486 aa)
initn: 3375 init1: 3375 opt: 3375 Z-score: 1974.9 bits: 375.4 E(85289): 2.9e-103
Smith-Waterman score: 3375; 100.0% identity (100.0% similar) in 486 aa overlap (232-717:1-486)
210 220 230 240 250 260
pF1KA1 QPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQMSNDVW
::::::::::::::::::::::::::::::
XP_016 MAGHSSCVIDDKMIVFGGSLGSRQMSNDVW
10 20 30
270 280 290 300 310 320
pF1KA1 VLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGP
40 50 60 70 80 90
330 340 350 360 370 380
pF1KA1 WAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPA
100 110 120 130 140 150
390 400 410 420 430 440
pF1KA1 LVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNG
160 170 180 190 200 210
450 460 470 480 490 500
pF1KA1 GSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGLSLAPRRGSLPDQKDLRLGSID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGLSLAPRRGSLPDQKDLRLGSID
220 230 240 250 260 270
510 520 530 540 550 560
pF1KA1 LNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLE
280 290 300 310 320 330
570 580 590 600 610 620
pF1KA1 AIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIARRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIARRL
340 350 360 370 380 390
630 640 650 660 670 680
pF1KA1 GHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFNSSSVVGPPETSLHTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFNSSSVVGPPETSLHTV
400 410 420 430 440 450
690 700 710
pF1KA1 VQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR
::::::::::::::::::::::::::::::::::::
XP_016 VQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR
460 470 480
717 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:59:34 2016 done: Wed Nov 2 20:59:35 2016
Total Scan time: 11.770 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]