FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1351, 1224 aa
  1>>>pF1KA1351 1224 - 1224 aa - 1224 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7185+/-0.0011; mu= 14.7356+/- 0.066
 mean_var=88.2737+/-18.217, 0's: 0 Z-trim(103.1): 40  B-trim: 0 in 0/51
 Lambda= 0.136508
 statistics sampled from 7239 (7264) to 7239 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.585), E-opt: 0.2 (0.223), width:  16
 Scan time:  4.820

The best scores are:                                      opt bits E(32554)
CCDS7619.1 WDR11 gene_id:55717|Hs108|chr10         (1224) 8136 1613.5       0


>>CCDS7619.1 WDR11 gene_id:55717|Hs108|chr10              (1224 aa)
 initn: 8136 init1: 8136 opt: 8136  Z-score: 8654.7  bits: 1613.5 E(32554):    0
Smith-Waterman score: 8136; 100.0% identity (100.0% similar) in 1224 aa overlap (1-1224:1-1224)

               10        20        30        40        50        60
pF1KA1 MLPYTVNFKVSARTLTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSITAQTLQVLEKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MLPYTVNFKVSARTLTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSITAQTLQVLEKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 KADVVKVKWARENYHHNIGSPYCLRLASADVNGKIIVWDVAAGVAQCEIQEHAKPIQDVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KADVVKVKWARENYHHNIGSPYCLRLASADVNGKIIVWDVAAGVAQCEIQEHAKPIQDVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 WLWNQDASRDLLLAIHPPNYIVLWNADTGTKLWKKSYADNILSFSFDPFDPSHLTLLTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 WLWNQDASRDLLLAIHPPNYIVLWNADTGTKLWKKSYADNILSFSFDPFDPSHLTLLTSE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 GIVFISDFSPSKPPSGPGKKVYISSPHSSPAHNKLATATGAKKALNKVKILITQEKPSAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GIVFISDFSPSKPPSGPGKKVYISSPHSSPAHNKLATATGAKKALNKVKILITQEKPSAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 FITLNDCLQLAYLPSKRNHMLLLYPREILILDLEVNQTVGVIAIERTGVPFLQVIPCFQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FITLNDCLQLAYLPSKRNHMLLLYPREILILDLEVNQTVGVIAIERTGVPFLQVIPCFQR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 DGLFCLHENGCITLRVRRSYNNIFTTSNEEPDPDPVQELTYDLRSQCDAIRVTKTVRPFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DGLFCLHENGCITLRVRRSYNNIFTTSNEEPDPDPVQELTYDLRSQCDAIRVTKTVRPFS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 MVCCPVNENAAALVVSDGRVMIWELKSAVCNRNSRNSSSGVSPLYSPVSFCGIPVGVLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MVCCPVNENAAALVVSDGRVMIWELKSAVCNRNSRNSSSGVSPLYSPVSFCGIPVGVLQN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 KLPDLSLDNMIGQSAIAGEEHPRGSILREVHLKFLLTGLLSGLPAPQFAIRMCPPLTTKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KLPDLSLDNMIGQSAIAGEEHPRGSILREVHLKFLLTGLLSGLPAPQFAIRMCPPLTTKN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 IKMYQPLLAVGTSNGSVLVYHLTSGLLHKELSIHSCEVKGIEWTSLTSFLSFATSTPNNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 IKMYQPLLAVGTSNGSVLVYHLTSGLLHKELSIHSCEVKGIEWTSLTSFLSFATSTPNNM
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 GLVRNELQLVDLPTGRSIAFRGERGNDESAIEMIKVSHLKQYLAVVFRDKPLELWDVRTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GLVRNELQLVDLPTGRSIAFRGERGNDESAIEMIKVSHLKQYLAVVFRDKPLELWDVRTC
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 TLLREMSKNFPTITALEWSPSHNLKSLRKKQLATREAMARQTVVSDTELSIVESSVISLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 TLLREMSKNFPTITALEWSPSHNLKSLRKKQLATREAMARQTVVSDTELSIVESSVISLL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 QEAESKSELSQNISAREHFVFTDIDGQVYHLTVEGNSVKDSARIPPDGSMGSITCIAWKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QEAESKSELSQNISAREHFVFTDIDGQVYHLTVEGNSVKDSARIPPDGSMGSITCIAWKG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 DTLVLGDMDGNLNFWDLKGRVSRGIPTHRSWVRKIRFAPGKGNQKLIAMYNDGAEVWDTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DTLVLGDMDGNLNFWDLKGRVSRGIPTHRSWVRKIRFAPGKGNQKLIAMYNDGAEVWDTK
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 EVQMVSSLRSGRNVTFRILDVDWCTSDKVILASDDGCIRVLEMSMKSACFRMDEQELTEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 EVQMVSSLRSGRNVTFRILDVDWCTSDKVILASDDGCIRVLEMSMKSACFRMDEQELTEP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 VWCPYLLVPRASLALKAFLLHQPWNGQYSLDISHVDYPENEEIKNLLQEQLNSLSNDIKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VWCPYLLVPRASLALKAFLLHQPWNGQYSLDISHVDYPENEEIKNLLQEQLNSLSNDIKK
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 LLLDPEFTLLQRCLLVSRLYGDESELHFWTVAAHYLHSLSQEKSASTTAPKEAAPRDKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LLLDPEFTLLQRCLLVSRLYGDESELHFWTVAAHYLHSLSQEKSASTTAPKEAAPRDKLS
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 NPLDICYDVLCENAYFQKFQLERVNLQEVKRSTYDHTRKCTDQLLLLGQTDRAVQLLLET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NPLDICYDVLCENAYFQKFQLERVNLQEVKRSTYDHTRKCTDQLLLLGQTDRAVQLLLET
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA1 SADNQHYYCDSLKACLVTTVTSSGPSQSTIKLVATNMIANGKLAEGVQLLCLIDKAADAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SADNQHYYCDSLKACLVTTVTSSGPSQSTIKLVATNMIANGKLAEGVQLLCLIDKAADAC
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA1 RYLQTYGEWNRAAWLAKVRLNPEECADVLRRWVDHLCSPQVNQKSKALLVLLSLGCFFSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RYLQTYGEWNRAAWLAKVRLNPEECADVLRRWVDHLCSPQVNQKSKALLVLLSLGCFFSV
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA1 AETLHSMRYFDRAALFVEACLKYGAFEVTEDTEKLITAIYADYARSLKNLGFKQGAVLFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AETLHSMRYFDRAALFVEACLKYGAFEVTEDTEKLITAIYADYARSLKNLGFKQGAVLFA
             1150      1160      1170      1180      1190      1200

             1210      1220    
pF1KA1 SKAGAAGKDLLNELESPKEEPIEE
       ::::::::::::::::::::::::
CCDS76 SKAGAAGKDLLNELESPKEEPIEE
             1210      1220    




1224 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 10:55:59 2016 done: Thu Nov  3 10:56:00 2016
 Total Scan time:  4.820 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]