Result of FASTA (ccds) for
pF1KA1432
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1432, 791 aa
1>>>pF1KA1432 791 - 791 aa - 791 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9091+/-0.000892; mu= 17.7254+/- 0.054
mean_var=74.7230+/-14.949, 0's: 0 Z-trim(107.1): 14 B-trim: 233 in 1/50
Lambda= 0.148370
statistics sampled from 9399 (9402) to 9399 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.289), width: 16
Scan time: 4.140
The best scores are: opt bits E(32554)
CCDS75811.1 RIC1 gene_id:57589|Hs108|chr9 (1386) 5288 1141.7 0
CCDS34982.2 RIC1 gene_id:57589|Hs108|chr9 (1423) 5288 1141.7 0
CCDS47949.2 RIC1 gene_id:57589|Hs108|chr9 (1165) 3422 742.2 1.1e-213
>>CCDS75811.1 RIC1 gene_id:57589|Hs108|chr9 (1386 aa)
initn: 5288 init1: 5288 opt: 5288 Z-score: 6107.1 bits: 1141.7 E(32554): 0
Smith-Waterman score: 5288; 100.0% identity (100.0% similar) in 791 aa overlap (1-791:596-1386)
10 20 30
pF1KA1 MSRYIPHPFLVVSVTLTSVSTENGITLKMP
::::::::::::::::::::::::::::::
CCDS75 ADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMP
570 580 590 600 610 620
40 50 60 70 80 90
pF1KA1 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
630 640 650 660 670 680
100 110 120 130 140 150
pF1KA1 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
690 700 710 720 730 740
160 170 180 190 200 210
pF1KA1 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
750 760 770 780 790 800
220 230 240 250 260 270
pF1KA1 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
810 820 830 840 850 860
280 290 300 310 320 330
pF1KA1 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
870 880 890 900 910 920
340 350 360 370 380 390
pF1KA1 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
930 940 950 960 970 980
400 410 420 430 440 450
pF1KA1 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
990 1000 1010 1020 1030 1040
460 470 480 490 500 510
pF1KA1 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
1050 1060 1070 1080 1090 1100
520 530 540 550 560 570
pF1KA1 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
1110 1120 1130 1140 1150 1160
580 590 600 610 620 630
pF1KA1 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
1170 1180 1190 1200 1210 1220
640 650 660 670 680 690
pF1KA1 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
1230 1240 1250 1260 1270 1280
700 710 720 730 740 750
pF1KA1 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
1290 1300 1310 1320 1330 1340
760 770 780 790
pF1KA1 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
:::::::::::::::::::::::::::::::::::::::::
CCDS75 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
1350 1360 1370 1380
>>CCDS34982.2 RIC1 gene_id:57589|Hs108|chr9 (1423 aa)
initn: 5288 init1: 5288 opt: 5288 Z-score: 6106.9 bits: 1141.7 E(32554): 0
Smith-Waterman score: 5288; 100.0% identity (100.0% similar) in 791 aa overlap (1-791:633-1423)
10 20 30
pF1KA1 MSRYIPHPFLVVSVTLTSVSTENGITLKMP
::::::::::::::::::::::::::::::
CCDS34 ADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMP
610 620 630 640 650 660
40 50 60 70 80 90
pF1KA1 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
670 680 690 700 710 720
100 110 120 130 140 150
pF1KA1 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
730 740 750 760 770 780
160 170 180 190 200 210
pF1KA1 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
790 800 810 820 830 840
220 230 240 250 260 270
pF1KA1 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
850 860 870 880 890 900
280 290 300 310 320 330
pF1KA1 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
910 920 930 940 950 960
340 350 360 370 380 390
pF1KA1 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
970 980 990 1000 1010 1020
400 410 420 430 440 450
pF1KA1 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
1030 1040 1050 1060 1070 1080
460 470 480 490 500 510
pF1KA1 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
1090 1100 1110 1120 1130 1140
520 530 540 550 560 570
pF1KA1 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
1150 1160 1170 1180 1190 1200
580 590 600 610 620 630
pF1KA1 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
1210 1220 1230 1240 1250 1260
640 650 660 670 680 690
pF1KA1 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
1270 1280 1290 1300 1310 1320
700 710 720 730 740 750
pF1KA1 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
1330 1340 1350 1360 1370 1380
760 770 780 790
pF1KA1 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
:::::::::::::::::::::::::::::::::::::::::
CCDS34 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
1390 1400 1410 1420
>>CCDS47949.2 RIC1 gene_id:57589|Hs108|chr9 (1165 aa)
initn: 3422 init1: 3422 opt: 3422 Z-score: 3949.6 bits: 742.2 E(32554): 1.1e-213
Smith-Waterman score: 3422; 100.0% identity (100.0% similar) in 509 aa overlap (1-509:633-1141)
10 20 30
pF1KA1 MSRYIPHPFLVVSVTLTSVSTENGITLKMP
::::::::::::::::::::::::::::::
CCDS47 ADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMP
610 620 630 640 650 660
40 50 60 70 80 90
pF1KA1 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
670 680 690 700 710 720
100 110 120 130 140 150
pF1KA1 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
730 740 750 760 770 780
160 170 180 190 200 210
pF1KA1 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
790 800 810 820 830 840
220 230 240 250 260 270
pF1KA1 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
850 860 870 880 890 900
280 290 300 310 320 330
pF1KA1 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
910 920 930 940 950 960
340 350 360 370 380 390
pF1KA1 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
970 980 990 1000 1010 1020
400 410 420 430 440 450
pF1KA1 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
1030 1040 1050 1060 1070 1080
460 470 480 490 500 510
pF1KA1 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTG
1090 1100 1110 1120 1130 1140
520 530 540 550 560 570
pF1KA1 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
CCDS47 NVDFMSLVQGELYFTPCIYTFCY
1150 1160
791 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:50:20 2016 done: Sat Nov 5 06:50:21 2016
Total Scan time: 4.140 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]