Result of FASTA (omim) for
pF1KA1432
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1432, 791 aa
1>>>pF1KA1432 791 - 791 aa - 791 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7568+/-0.000365; mu= 18.8841+/- 0.023
mean_var=83.4293+/-16.912, 0's: 0 Z-trim(114.4): 11 B-trim: 0 in 0/50
Lambda= 0.140416
statistics sampled from 24207 (24218) to 24207 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.284), width: 16
Scan time: 12.660
The best scores are: opt bits E(85289)
XP_011516270 (OMIM: 610354) PREDICTED: RAB6A-GEF c ( 886) 5288 1081.6 0
XP_011516269 (OMIM: 610354) PREDICTED: RAB6A-GEF c (1112) 5288 1081.6 0
XP_016870423 (OMIM: 610354) PREDICTED: RAB6A-GEF c (1308) 5288 1081.7 0
XP_016870425 (OMIM: 610354) PREDICTED: RAB6A-GEF c (1308) 5288 1081.7 0
XP_016870424 (OMIM: 610354) PREDICTED: RAB6A-GEF c (1308) 5288 1081.7 0
NP_001193486 (OMIM: 610354) RAB6A-GEF complex part (1386) 5288 1081.7 0
XP_005251580 (OMIM: 610354) PREDICTED: RAB6A-GEF c (1422) 5288 1081.7 0
NP_065880 (OMIM: 610354) RAB6A-GEF complex partner (1423) 5288 1081.7 0
NP_001129392 (OMIM: 610354) RAB6A-GEF complex part (1165) 3422 703.6 1.2e-201
>>XP_011516270 (OMIM: 610354) PREDICTED: RAB6A-GEF compl (886 aa)
initn: 5288 init1: 5288 opt: 5288 Z-score: 5785.8 bits: 1081.6 E(85289): 0
Smith-Waterman score: 5288; 100.0% identity (100.0% similar) in 791 aa overlap (1-791:96-886)
10 20 30
pF1KA1 MSRYIPHPFLVVSVTLTSVSTENGITLKMP
::::::::::::::::::::::::::::::
XP_011 ADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMP
70 80 90 100 110 120
40 50 60 70 80 90
pF1KA1 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
130 140 150 160 170 180
100 110 120 130 140 150
pF1KA1 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
190 200 210 220 230 240
160 170 180 190 200 210
pF1KA1 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
250 260 270 280 290 300
220 230 240 250 260 270
pF1KA1 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
310 320 330 340 350 360
280 290 300 310 320 330
pF1KA1 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
370 380 390 400 410 420
340 350 360 370 380 390
pF1KA1 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
430 440 450 460 470 480
400 410 420 430 440 450
pF1KA1 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
490 500 510 520 530 540
460 470 480 490 500 510
pF1KA1 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
550 560 570 580 590 600
520 530 540 550 560 570
pF1KA1 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
610 620 630 640 650 660
580 590 600 610 620 630
pF1KA1 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
670 680 690 700 710 720
640 650 660 670 680 690
pF1KA1 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
730 740 750 760 770 780
700 710 720 730 740 750
pF1KA1 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
790 800 810 820 830 840
760 770 780 790
pF1KA1 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
:::::::::::::::::::::::::::::::::::::::::
XP_011 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
850 860 870 880
>>XP_011516269 (OMIM: 610354) PREDICTED: RAB6A-GEF compl (1112 aa)
initn: 5288 init1: 5288 opt: 5288 Z-score: 5784.3 bits: 1081.6 E(85289): 0
Smith-Waterman score: 5288; 100.0% identity (100.0% similar) in 791 aa overlap (1-791:322-1112)
10 20 30
pF1KA1 MSRYIPHPFLVVSVTLTSVSTENGITLKMP
::::::::::::::::::::::::::::::
XP_011 ADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMP
300 310 320 330 340 350
40 50 60 70 80 90
pF1KA1 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
360 370 380 390 400 410
100 110 120 130 140 150
pF1KA1 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
420 430 440 450 460 470
160 170 180 190 200 210
pF1KA1 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
480 490 500 510 520 530
220 230 240 250 260 270
pF1KA1 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
540 550 560 570 580 590
280 290 300 310 320 330
pF1KA1 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
600 610 620 630 640 650
340 350 360 370 380 390
pF1KA1 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
660 670 680 690 700 710
400 410 420 430 440 450
pF1KA1 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
720 730 740 750 760 770
460 470 480 490 500 510
pF1KA1 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
780 790 800 810 820 830
520 530 540 550 560 570
pF1KA1 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
840 850 860 870 880 890
580 590 600 610 620 630
pF1KA1 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
900 910 920 930 940 950
640 650 660 670 680 690
pF1KA1 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
960 970 980 990 1000 1010
700 710 720 730 740 750
pF1KA1 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
1020 1030 1040 1050 1060 1070
760 770 780 790
pF1KA1 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
:::::::::::::::::::::::::::::::::::::::::
XP_011 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
1080 1090 1100 1110
>>XP_016870423 (OMIM: 610354) PREDICTED: RAB6A-GEF compl (1308 aa)
initn: 5288 init1: 5288 opt: 5288 Z-score: 5783.3 bits: 1081.7 E(85289): 0
Smith-Waterman score: 5288; 100.0% identity (100.0% similar) in 791 aa overlap (1-791:518-1308)
10 20 30
pF1KA1 MSRYIPHPFLVVSVTLTSVSTENGITLKMP
::::::::::::::::::::::::::::::
XP_016 ADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMP
490 500 510 520 530 540
40 50 60 70 80 90
pF1KA1 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
550 560 570 580 590 600
100 110 120 130 140 150
pF1KA1 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
610 620 630 640 650 660
160 170 180 190 200 210
pF1KA1 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
670 680 690 700 710 720
220 230 240 250 260 270
pF1KA1 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
730 740 750 760 770 780
280 290 300 310 320 330
pF1KA1 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
790 800 810 820 830 840
340 350 360 370 380 390
pF1KA1 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
850 860 870 880 890 900
400 410 420 430 440 450
pF1KA1 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
910 920 930 940 950 960
460 470 480 490 500 510
pF1KA1 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
970 980 990 1000 1010 1020
520 530 540 550 560 570
pF1KA1 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
1030 1040 1050 1060 1070 1080
580 590 600 610 620 630
pF1KA1 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
1090 1100 1110 1120 1130 1140
640 650 660 670 680 690
pF1KA1 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
1150 1160 1170 1180 1190 1200
700 710 720 730 740 750
pF1KA1 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
1210 1220 1230 1240 1250 1260
760 770 780 790
pF1KA1 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
:::::::::::::::::::::::::::::::::::::::::
XP_016 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
1270 1280 1290 1300
>>XP_016870425 (OMIM: 610354) PREDICTED: RAB6A-GEF compl (1308 aa)
initn: 5288 init1: 5288 opt: 5288 Z-score: 5783.3 bits: 1081.7 E(85289): 0
Smith-Waterman score: 5288; 100.0% identity (100.0% similar) in 791 aa overlap (1-791:518-1308)
10 20 30
pF1KA1 MSRYIPHPFLVVSVTLTSVSTENGITLKMP
::::::::::::::::::::::::::::::
XP_016 ADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMP
490 500 510 520 530 540
40 50 60 70 80 90
pF1KA1 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
550 560 570 580 590 600
100 110 120 130 140 150
pF1KA1 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
610 620 630 640 650 660
160 170 180 190 200 210
pF1KA1 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
670 680 690 700 710 720
220 230 240 250 260 270
pF1KA1 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
730 740 750 760 770 780
280 290 300 310 320 330
pF1KA1 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
790 800 810 820 830 840
340 350 360 370 380 390
pF1KA1 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
850 860 870 880 890 900
400 410 420 430 440 450
pF1KA1 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
910 920 930 940 950 960
460 470 480 490 500 510
pF1KA1 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
970 980 990 1000 1010 1020
520 530 540 550 560 570
pF1KA1 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
1030 1040 1050 1060 1070 1080
580 590 600 610 620 630
pF1KA1 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
1090 1100 1110 1120 1130 1140
640 650 660 670 680 690
pF1KA1 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
1150 1160 1170 1180 1190 1200
700 710 720 730 740 750
pF1KA1 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
1210 1220 1230 1240 1250 1260
760 770 780 790
pF1KA1 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
:::::::::::::::::::::::::::::::::::::::::
XP_016 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
1270 1280 1290 1300
>>XP_016870424 (OMIM: 610354) PREDICTED: RAB6A-GEF compl (1308 aa)
initn: 5288 init1: 5288 opt: 5288 Z-score: 5783.3 bits: 1081.7 E(85289): 0
Smith-Waterman score: 5288; 100.0% identity (100.0% similar) in 791 aa overlap (1-791:518-1308)
10 20 30
pF1KA1 MSRYIPHPFLVVSVTLTSVSTENGITLKMP
::::::::::::::::::::::::::::::
XP_016 ADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMP
490 500 510 520 530 540
40 50 60 70 80 90
pF1KA1 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
550 560 570 580 590 600
100 110 120 130 140 150
pF1KA1 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
610 620 630 640 650 660
160 170 180 190 200 210
pF1KA1 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
670 680 690 700 710 720
220 230 240 250 260 270
pF1KA1 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
730 740 750 760 770 780
280 290 300 310 320 330
pF1KA1 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
790 800 810 820 830 840
340 350 360 370 380 390
pF1KA1 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
850 860 870 880 890 900
400 410 420 430 440 450
pF1KA1 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
910 920 930 940 950 960
460 470 480 490 500 510
pF1KA1 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
970 980 990 1000 1010 1020
520 530 540 550 560 570
pF1KA1 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
1030 1040 1050 1060 1070 1080
580 590 600 610 620 630
pF1KA1 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
1090 1100 1110 1120 1130 1140
640 650 660 670 680 690
pF1KA1 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
1150 1160 1170 1180 1190 1200
700 710 720 730 740 750
pF1KA1 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
1210 1220 1230 1240 1250 1260
760 770 780 790
pF1KA1 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
:::::::::::::::::::::::::::::::::::::::::
XP_016 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
1270 1280 1290 1300
>>NP_001193486 (OMIM: 610354) RAB6A-GEF complex partner (1386 aa)
initn: 5288 init1: 5288 opt: 5288 Z-score: 5782.9 bits: 1081.7 E(85289): 0
Smith-Waterman score: 5288; 100.0% identity (100.0% similar) in 791 aa overlap (1-791:596-1386)
10 20 30
pF1KA1 MSRYIPHPFLVVSVTLTSVSTENGITLKMP
::::::::::::::::::::::::::::::
NP_001 ADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMP
570 580 590 600 610 620
40 50 60 70 80 90
pF1KA1 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
630 640 650 660 670 680
100 110 120 130 140 150
pF1KA1 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
690 700 710 720 730 740
160 170 180 190 200 210
pF1KA1 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
750 760 770 780 790 800
220 230 240 250 260 270
pF1KA1 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
810 820 830 840 850 860
280 290 300 310 320 330
pF1KA1 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
870 880 890 900 910 920
340 350 360 370 380 390
pF1KA1 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
930 940 950 960 970 980
400 410 420 430 440 450
pF1KA1 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
990 1000 1010 1020 1030 1040
460 470 480 490 500 510
pF1KA1 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
1050 1060 1070 1080 1090 1100
520 530 540 550 560 570
pF1KA1 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
1110 1120 1130 1140 1150 1160
580 590 600 610 620 630
pF1KA1 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
1170 1180 1190 1200 1210 1220
640 650 660 670 680 690
pF1KA1 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
1230 1240 1250 1260 1270 1280
700 710 720 730 740 750
pF1KA1 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
1290 1300 1310 1320 1330 1340
760 770 780 790
pF1KA1 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
:::::::::::::::::::::::::::::::::::::::::
NP_001 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
1350 1360 1370 1380
>>XP_005251580 (OMIM: 610354) PREDICTED: RAB6A-GEF compl (1422 aa)
initn: 5288 init1: 5288 opt: 5288 Z-score: 5782.8 bits: 1081.7 E(85289): 0
Smith-Waterman score: 5288; 100.0% identity (100.0% similar) in 791 aa overlap (1-791:632-1422)
10 20 30
pF1KA1 MSRYIPHPFLVVSVTLTSVSTENGITLKMP
::::::::::::::::::::::::::::::
XP_005 ADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMP
610 620 630 640 650 660
40 50 60 70 80 90
pF1KA1 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
670 680 690 700 710 720
100 110 120 130 140 150
pF1KA1 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
730 740 750 760 770 780
160 170 180 190 200 210
pF1KA1 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
790 800 810 820 830 840
220 230 240 250 260 270
pF1KA1 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
850 860 870 880 890 900
280 290 300 310 320 330
pF1KA1 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
910 920 930 940 950 960
340 350 360 370 380 390
pF1KA1 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
970 980 990 1000 1010 1020
400 410 420 430 440 450
pF1KA1 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
1030 1040 1050 1060 1070 1080
460 470 480 490 500 510
pF1KA1 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
1090 1100 1110 1120 1130 1140
520 530 540 550 560 570
pF1KA1 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
1150 1160 1170 1180 1190 1200
580 590 600 610 620 630
pF1KA1 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
1210 1220 1230 1240 1250 1260
640 650 660 670 680 690
pF1KA1 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
1270 1280 1290 1300 1310 1320
700 710 720 730 740 750
pF1KA1 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
1330 1340 1350 1360 1370 1380
760 770 780 790
pF1KA1 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
:::::::::::::::::::::::::::::::::::::::::
XP_005 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
1390 1400 1410 1420
>>NP_065880 (OMIM: 610354) RAB6A-GEF complex partner pro (1423 aa)
initn: 5288 init1: 5288 opt: 5288 Z-score: 5782.8 bits: 1081.7 E(85289): 0
Smith-Waterman score: 5288; 100.0% identity (100.0% similar) in 791 aa overlap (1-791:633-1423)
10 20 30
pF1KA1 MSRYIPHPFLVVSVTLTSVSTENGITLKMP
::::::::::::::::::::::::::::::
NP_065 ADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMP
610 620 630 640 650 660
40 50 60 70 80 90
pF1KA1 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
670 680 690 700 710 720
100 110 120 130 140 150
pF1KA1 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
730 740 750 760 770 780
160 170 180 190 200 210
pF1KA1 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
790 800 810 820 830 840
220 230 240 250 260 270
pF1KA1 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
850 860 870 880 890 900
280 290 300 310 320 330
pF1KA1 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
910 920 930 940 950 960
340 350 360 370 380 390
pF1KA1 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
970 980 990 1000 1010 1020
400 410 420 430 440 450
pF1KA1 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
1030 1040 1050 1060 1070 1080
460 470 480 490 500 510
pF1KA1 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
1090 1100 1110 1120 1130 1140
520 530 540 550 560 570
pF1KA1 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
1150 1160 1170 1180 1190 1200
580 590 600 610 620 630
pF1KA1 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SNKGDECSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQV
1210 1220 1230 1240 1250 1260
640 650 660 670 680 690
pF1KA1 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 QLRYLLHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDR
1270 1280 1290 1300 1310 1320
700 710 720 730 740 750
pF1KA1 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 WASTDCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSS
1330 1340 1350 1360 1370 1380
760 770 780 790
pF1KA1 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
:::::::::::::::::::::::::::::::::::::::::
NP_065 HGSIPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS
1390 1400 1410 1420
>>NP_001129392 (OMIM: 610354) RAB6A-GEF complex partner (1165 aa)
initn: 3422 init1: 3422 opt: 3422 Z-score: 3741.1 bits: 703.6 E(85289): 1.2e-201
Smith-Waterman score: 3422; 100.0% identity (100.0% similar) in 509 aa overlap (1-509:633-1141)
10 20 30
pF1KA1 MSRYIPHPFLVVSVTLTSVSTENGITLKMP
::::::::::::::::::::::::::::::
NP_001 ADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMP
610 620 630 640 650 660
40 50 60 70 80 90
pF1KA1 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWT
670 680 690 700 710 720
100 110 120 130 140 150
pF1KA1 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVL
730 740 750 760 770 780
160 170 180 190 200 210
pF1KA1 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGE
790 800 810 820 830 840
220 230 240 250 260 270
pF1KA1 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVV
850 860 870 880 890 900
280 290 300 310 320 330
pF1KA1 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLL
910 920 930 940 950 960
340 350 360 370 380 390
pF1KA1 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSA
970 980 990 1000 1010 1020
400 410 420 430 440 450
pF1KA1 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCF
1030 1040 1050 1060 1070 1080
460 470 480 490 500 510
pF1KA1 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTG
1090 1100 1110 1120 1130 1140
520 530 540 550 560 570
pF1KA1 GEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPL
NP_001 NVDFMSLVQGELYFTPCIYTFCY
1150 1160
791 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:50:21 2016 done: Sat Nov 5 06:50:23 2016
Total Scan time: 12.660 Total Display time: 0.240
Function used was FASTA [36.3.4 Apr, 2011]