FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1434, 672 aa
  1>>>pF1KA1434 672 - 672 aa - 672 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1312+/-0.000906; mu= 14.1794+/- 0.054
 mean_var=60.0484+/-11.743, 0's: 0 Z-trim(104.2): 30  B-trim: 49 in 1/49
 Lambda= 0.165510
 statistics sampled from 7762 (7778) to 7762 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.239), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS13090.1 GPCPD1 gene_id:56261|Hs108|chr20       ( 672) 4520 1088.1       0


>>CCDS13090.1 GPCPD1 gene_id:56261|Hs108|chr20            (672 aa)
 initn: 4520 init1: 4520 opt: 4520  Z-score: 5824.3  bits: 1088.1 E(32554):    0
Smith-Waterman score: 4520; 100.0% identity (100.0% similar) in 672 aa overlap (1-672:1-672)

               10        20        30        40        50        60
pF1KA1 MTPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 GVSVQYRYFKGYFLEPKTIGGPCQVIVHKWETHLQPRSITPLESEIIIDDGQFGIHNGVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GVSVQYRYFKGYFLEPKTIGGPCQVIVHKWETHLQPRSITPLESEIIIDDGQFGIHNGVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 TLDSGWLTCQTEIRLRLHYSEKPPVSITKKKLKKSRFRVKLTLEGLEEDDDDRVSPTVLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TLDSGWLTCQTEIRLRLHYSEKPPVSITKKKLKKSRFRVKLTLEGLEEDDDDRVSPTVLH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 KMSNSLEISLISDNEFKCRHSQPECGYGLQPDRWTEYSIQTMEPDNLELIFDFFEEDLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KMSNSLEISLISDNEFKCRHSQPECGYGLQPDRWTEYSIQTMEPDNLELIFDFFEEDLSE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 HVVQGDALPGHVGTACLLSSTIAESGKSAGILTLPIMSRNSRKTIGKVRVDYIIIKPLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HVVQGDALPGHVGTACLLSSTIAESGKSAGILTLPIMSRNSRKTIGKVRVDYIIIKPLPG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 YSCDMKSSFSKYWKPRIPLDVGHRGAGNSTTTAQLAKVQENTIASLRNAASHGAAFVEFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YSCDMKSSFSKYWKPRIPLDVGHRGAGNSTTTAQLAKVQENTIASLRNAASHGAAFVEFD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 VHLSKDFVPVVYHDLTCCLTMKKKFDADPVELFEIPVKELTFDQLQLLKLTHVTALKSKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VHLSKDFVPVVYHDLTCCLTMKKKFDADPVELFEIPVKELTFDQLQLLKLTHVTALKSKD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 RKESVVQEENSFSENQPFPSLKMVLESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RKESVVQEENSFSENQPFPSLKMVLESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 LFLDIILKTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQGKSEIYPELMDLRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LFLDIILKTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQGKSEIYPELMDLRS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 RTTPIAMSFAQFENLLGINVHTEDLLRNPSYIQEAKAKGLVIFCWGDDTNDPENRRKLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RTTPIAMSFAQFENLLGINVHTEDLLRNPSYIQEAKAKGLVIFCWGDDTNDPENRRKLKE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 LGVNGLIYDRIYDWMPEQPNIFQVEQLERLKQELPELKSCLCPTVSRFVPSSLCGESDIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LGVNGLIYDRIYDWMPEQPNIFQVEQLERLKQELPELKSCLCPTVSRFVPSSLCGESDIH
              610       620       630       640       650       660

              670  
pF1KA1 VDANGIDNVENA
       ::::::::::::
CCDS13 VDANGIDNVENA
              670  




672 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:10:29 2016 done: Wed Nov  2 21:10:29 2016
 Total Scan time:  2.670 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]