Result of FASTA (ccds) for
pF1KA1454
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1454, 1399 aa
1>>>pF1KA1454 1399 - 1399 aa - 1399 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.4756+/-0.00165; mu= -3.8997+/- 0.097
mean_var=499.6640+/-105.471, 0's: 0 Z-trim(108.1): 106 B-trim: 154 in 1/49
Lambda= 0.057377
statistics sampled from 9924 (9974) to 9924 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.306), width: 16
Scan time: 5.410
The best scores are: opt bits E(32554)
CCDS53962.1 SCAPER gene_id:49855|Hs108|chr15 (1400) 9144 773.8 0
CCDS53961.1 SCAPER gene_id:49855|Hs108|chr15 (1154) 7435 632.2 2.5e-180
>>CCDS53962.1 SCAPER gene_id:49855|Hs108|chr15 (1400 aa)
initn: 9144 init1: 9144 opt: 9144 Z-score: 4114.5 bits: 773.8 E(32554): 0
Smith-Waterman score: 9144; 99.9% identity (99.9% similar) in 1399 aa overlap (1-1399:2-1400)
10 20 30 40 50
pF1KA1 MASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDDDGKPKCQTGGKSKRTIQGTH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MMASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDDDGKPKCQTGGKSKRTIQGTH
10 20 30 40 50 60
60 70 80 90 100 110
pF1KA1 KTTKQSTAVDCKITSSTTGDKHFDKSPTKTRHPRKIDLRARYWAFLFDNLRRAVDEIYVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KTTKQSTAVDCKITSSTTGDKHFDKSPTKTRHPRKIDLRARYWAFLFDNLRRAVDEIYVT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA1 CESDQSVVECKEVLMMLDNYVRDFKALIDWIQLQEKLEKTDAQSRPTSLAWEVKKMSPGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CESDQSVVECKEVLMMLDNYVRDFKALIDWIQLQEKLEKTDAQSRPTSLAWEVKKMSPGR
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA1 HVIPSPSTDRINVTSNARRSLNFGGSTGTVPAPRLAPTGVSWADKVKAHHTGSTASSEIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HVIPSPSTDRINVTSNARRSLNFGGSTGTVPAPRLAPTGVSWADKVKAHHTGSTASSEIT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA1 PAQSCPPMTVQKASRKNERKDAEGWETVQRGRPIRSRSTAVMPKVSLATEATRSKDDSDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PAQSCPPMTVQKASRKNERKDAEGWETVQRGRPIRSRSTAVMPKVSLATEATRSKDDSDK
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA1 ENVCLLPDESIQKGQFVGDGTSNTIESHPKDSLHSCDHPLAEKTQFTVSTLDDVKNSGSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ENVCLLPDESIQKGQFVGDGTSNTIESHPKDSLHSCDHPLAEKTQFTVSTLDDVKNSGSI
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA1 RDNYVRTSEISAVHIDTECVSVMLQAGTPPLQVNEEKFPAEKARIENEMDPSDISNSMAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RDNYVRTSEISAVHIDTECVSVMLQAGTPPLQVNEEKFPAEKARIENEMDPSDISNSMAE
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA1 VLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGS
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA1 VSFCGMSMDWNDVLADYEARESWRQNTSWGDIVEEEPARPPGHGIHMHEKLSSPSRKRTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VSFCGMSMDWNDVLADYEARESWRQNTSWGDIVEEEPARPPGHGIHMHEKLSSPSRKRTI
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA1 AESKKKHEEKQMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AESKKKHEEKQMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLH
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA1 AEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQ
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA1 RRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQEKEKAREDAARER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQEKEKAREDAARER
670 680 690 700 710 720
720 730 740 750 760 770
pF1KA1 ARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHANTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHANTD
730 740 750 760 770 780
780 790 800 810 820 830
pF1KA1 YAPKLTPYERKKQCSLCNVLISSEVYLFSHVKGRKHQQAVRENTSIQGRELSDEEVEHLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YAPKLTPYERKKQCSLCNVLISSEVYLFSHVKGRKHQQAVRENTSIQGRELSDEEVEHLS
790 800 810 820 830 840
840 850 860 870 880 890
pF1KA1 LKKYIIDIVVESTAPAEALKDGEERQKNKKKAKKIKARMNFRAKEYESLMETKNSGSDSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LKKYIIDIVVESTAPAEALKDGEERQKNKKKAKKIKARMNFRAKEYESLMETKNSGSDSP
850 860 870 880 890 900
900 910 920 930 940 950
pF1KA1 YKAKLQRLAKDLLKQVQVQDSGSWANNKVSALDRTLGEITRILEKENVADQIAFQAAGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YKAKLQRLAKDLLKQVQVQDSGSWANNKVSALDRTLGEITRILEKENVADQIAFQAAGGL
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KA1 TALEHILQAVVPATNVNTVLRIPPKSLCNAINVYNLTCNNCSENCSDVLFSNKITFLMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TALEHILQAVVPATNVNTVLRIPPKSLCNAINVYNLTCNNCSENCSDVLFSNKITFLMDL
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KA1 LIHQLTVYVPDENNTILGRNTNKQVFEGLTTGLLKVSAVVLGCLIANRPDGNCQPATPKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LIHQLTVYVPDENNTILGRNTNKQVFEGLTTGLLKVSAVVLGCLIANRPDGNCQPATPKI
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120 1130
pF1KA1 PTQEMKNKTSQGDPFNNRVQDLISYVVNMGLIDKLCACFLSVQGPVDENPKMAIFLQHAA
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PTQEMKNKPSQGDPFNNRVQDLISYVVNMGLIDKLCACFLSVQGPVDENPKMAIFLQHAA
1090 1100 1110 1120 1130 1140
1140 1150 1160 1170 1180 1190
pF1KA1 GLLHAMCTLCFAVTGRSYSIFDNNRQDPTGLTAALQATDLAGVLHMLYCVLFHGTILDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GLLHAMCTLCFAVTGRSYSIFDNNRQDPTGLTAALQATDLAGVLHMLYCVLFHGTILDPS
1150 1160 1170 1180 1190 1200
1200 1210 1220 1230 1240 1250
pF1KA1 TASPKENYTQNTIQVAIQSLRFFNSFAALHLPAFQSIVGAEGLSLAFRHMASSLLGHCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TASPKENYTQNTIQVAIQSLRFFNSFAALHLPAFQSIVGAEGLSLAFRHMASSLLGHCSQ
1210 1220 1230 1240 1250 1260
1260 1270 1280 1290 1300 1310
pF1KA1 VSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPRLIKVLFPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPRLIKVLFPS
1270 1280 1290 1300 1310 1320
1320 1330 1340 1350 1360 1370
pF1KA1 LIAACYNNHQNKIILEQEMSCVLLATFIQDLAQTPGQAENQPYQPKGKCLGSQDYLELAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LIAACYNNHQNKIILEQEMSCVLLATFIQDLAQTPGQAENQPYQPKGKCLGSQDYLELAN
1330 1340 1350 1360 1370 1380
1380 1390
pF1KA1 RFPQQAWEEARQFFLKKEKK
::::::::::::::::::::
CCDS53 RFPQQAWEEARQFFLKKEKK
1390 1400
>>CCDS53961.1 SCAPER gene_id:49855|Hs108|chr15 (1154 aa)
initn: 7435 init1: 7435 opt: 7435 Z-score: 3350.9 bits: 632.2 E(32554): 2.5e-180
Smith-Waterman score: 7435; 99.9% identity (99.9% similar) in 1143 aa overlap (257-1399:12-1154)
230 240 250 260 270 280
pF1KA1 AHHTGSTASSEITPAQSCPPMTVQKASRKNERKDAEGWETVQRGRPIRSRSTAVMPKVSL
::::::::::::::::::::::::::::::
CCDS53 MKTKYIFCNITERKDAEGWETVQRGRPIRSRSTAVMPKVSL
10 20 30 40
290 300 310 320 330 340
pF1KA1 ATEATRSKDDSDKENVCLLPDESIQKGQFVGDGTSNTIESHPKDSLHSCDHPLAEKTQFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ATEATRSKDDSDKENVCLLPDESIQKGQFVGDGTSNTIESHPKDSLHSCDHPLAEKTQFT
50 60 70 80 90 100
350 360 370 380 390 400
pF1KA1 VSTLDDVKNSGSIRDNYVRTSEISAVHIDTECVSVMLQAGTPPLQVNEEKFPAEKARIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VSTLDDVKNSGSIRDNYVRTSEISAVHIDTECVSVMLQAGTPPLQVNEEKFPAEKARIEN
110 120 130 140 150 160
410 420 430 440 450 460
pF1KA1 EMDPSDISNSMAEVLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EMDPSDISNSMAEVLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETD
170 180 190 200 210 220
470 480 490 500 510 520
pF1KA1 NDSDFSASMGSGSVSFCGMSMDWNDVLADYEARESWRQNTSWGDIVEEEPARPPGHGIHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NDSDFSASMGSGSVSFCGMSMDWNDVLADYEARESWRQNTSWGDIVEEEPARPPGHGIHM
230 240 250 260 270 280
530 540 550 560 570 580
pF1KA1 HEKLSSPSRKRTIAESKKKHEEKQMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HEKLSSPSRKRTIAESKKKHEEKQMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELL
290 300 310 320 330 340
590 600 610 620 630 640
pF1KA1 DQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKE
350 360 370 380 390 400
650 660 670 680 690 700
pF1KA1 YEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQ
410 420 430 440 450 460
710 720 730 740 750 760
pF1KA1 EKEKAREDAARERARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EKEKAREDAARERARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEK
470 480 490 500 510 520
770 780 790 800 810 820
pF1KA1 AAELSSGRHANTDYAPKLTPYERKKQCSLCNVLISSEVYLFSHVKGRKHQQAVRENTSIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AAELSSGRHANTDYAPKLTPYERKKQCSLCNVLISSEVYLFSHVKGRKHQQAVRENTSIQ
530 540 550 560 570 580
830 840 850 860 870 880
pF1KA1 GRELSDEEVEHLSLKKYIIDIVVESTAPAEALKDGEERQKNKKKAKKIKARMNFRAKEYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GRELSDEEVEHLSLKKYIIDIVVESTAPAEALKDGEERQKNKKKAKKIKARMNFRAKEYE
590 600 610 620 630 640
890 900 910 920 930 940
pF1KA1 SLMETKNSGSDSPYKAKLQRLAKDLLKQVQVQDSGSWANNKVSALDRTLGEITRILEKEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SLMETKNSGSDSPYKAKLQRLAKDLLKQVQVQDSGSWANNKVSALDRTLGEITRILEKEN
650 660 670 680 690 700
950 960 970 980 990 1000
pF1KA1 VADQIAFQAAGGLTALEHILQAVVPATNVNTVLRIPPKSLCNAINVYNLTCNNCSENCSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VADQIAFQAAGGLTALEHILQAVVPATNVNTVLRIPPKSLCNAINVYNLTCNNCSENCSD
710 720 730 740 750 760
1010 1020 1030 1040 1050 1060
pF1KA1 VLFSNKITFLMDLLIHQLTVYVPDENNTILGRNTNKQVFEGLTTGLLKVSAVVLGCLIAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VLFSNKITFLMDLLIHQLTVYVPDENNTILGRNTNKQVFEGLTTGLLKVSAVVLGCLIAN
770 780 790 800 810 820
1070 1080 1090 1100 1110 1120
pF1KA1 RPDGNCQPATPKIPTQEMKNKTSQGDPFNNRVQDLISYVVNMGLIDKLCACFLSVQGPVD
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS53 RPDGNCQPATPKIPTQEMKNKPSQGDPFNNRVQDLISYVVNMGLIDKLCACFLSVQGPVD
830 840 850 860 870 880
1130 1140 1150 1160 1170 1180
pF1KA1 ENPKMAIFLQHAAGLLHAMCTLCFAVTGRSYSIFDNNRQDPTGLTAALQATDLAGVLHML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ENPKMAIFLQHAAGLLHAMCTLCFAVTGRSYSIFDNNRQDPTGLTAALQATDLAGVLHML
890 900 910 920 930 940
1190 1200 1210 1220 1230 1240
pF1KA1 YCVLFHGTILDPSTASPKENYTQNTIQVAIQSLRFFNSFAALHLPAFQSIVGAEGLSLAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YCVLFHGTILDPSTASPKENYTQNTIQVAIQSLRFFNSFAALHLPAFQSIVGAEGLSLAF
950 960 970 980 990 1000
1250 1260 1270 1280 1290 1300
pF1KA1 RHMASSLLGHCSQVSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RHMASSLLGHCSQVSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQY
1010 1020 1030 1040 1050 1060
1310 1320 1330 1340 1350 1360
pF1KA1 FSDPRLIKVLFPSLIAACYNNHQNKIILEQEMSCVLLATFIQDLAQTPGQAENQPYQPKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FSDPRLIKVLFPSLIAACYNNHQNKIILEQEMSCVLLATFIQDLAQTPGQAENQPYQPKG
1070 1080 1090 1100 1110 1120
1370 1380 1390
pF1KA1 KCLGSQDYLELANRFPQQAWEEARQFFLKKEKK
:::::::::::::::::::::::::::::::::
CCDS53 KCLGSQDYLELANRFPQQAWEEARQFFLKKEKK
1130 1140 1150
1399 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:04:52 2016 done: Thu Nov 3 20:04:53 2016
Total Scan time: 5.410 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]