Result of FASTA (ccds) for
pF1KA1462
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1462, 1359 aa
1>>>pF1KA1462 1359 - 1359 aa - 1359 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6377+/-0.00102; mu= -0.4158+/- 0.061
mean_var=279.8045+/-58.502, 0's: 0 Z-trim(113.9): 16 B-trim: 551 in 2/51
Lambda= 0.076674
statistics sampled from 14530 (14542) to 14530 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.447), width: 16
Scan time: 6.830
The best scores are: opt bits E(32554)
CCDS41500.1 KIAA1462 gene_id:57608|Hs108|chr10 (1359) 9377 1051.6 0
>>CCDS41500.1 KIAA1462 gene_id:57608|Hs108|chr10 (1359 aa)
initn: 9377 init1: 9377 opt: 9377 Z-score: 5616.4 bits: 1051.6 E(32554): 0
Smith-Waterman score: 9377; 99.9% identity (99.9% similar) in 1359 aa overlap (1-1359:1-1359)
10 20 30 40 50 60
pF1KA1 MYSVEDLLISHGYKLSRDPPASREDNPKGRQAARTGTRAGQGLQNGHEDGPAALAHRKTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MYSVEDLLISHGYKLSRDPPASREDNPKGRQAARTGTRAGQGLQNGHEDGPAALAHRKTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 AGKGHVSDSESRRSTPRGHGEPQSTSASRTSEAGFCNQPPSAWSSHPPTGNDQAYRRRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AGKGHVSDSESRRSTPRGHGEPQSTSASRTSEAGFCNQPPSAWSSHPPTGNDQAYRRRGR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 QEARSQKPREHENLEARGMAQAHSLPVHVREGPWEVGGRSEHVMKKPVWEEELRMSGPAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QEARSQKPREHENLEARGMAQAHSLPVHVREGPWEVGGRSEHVMKKPVWEEELRMSGPAK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 WQNVSLESWNQPRKLGRQMSDGDGERLFQDLYPFIQGEHVLNSQNKGKSRSLPRVLSPES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WQNVSLESWNQPRKLGRQMSDGDGERLFQDLYPFIQGEHVLNSQNKGKSRSLPRVLSPES
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 LSCTEIPIPLNERHSPKMPPYPPTCAPNLDSTRNSEKSGCSAPFPRPKFGRPLKPPSYSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LSCTEIPIPLNERHSPKMPPYPPTCAPNLDSTRNSEKSGCSAPFPRPKFGRPLKPPSYSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 HQQSRGGADSSDSQDSQQMDAYVPRHELCLSDPGLEPPVYVPPPSYRSPPQNIPNPYLED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HQQSRGGADSSDSQDSQQMDAYVPRHELCLSDPGLEPPVYVPPPSYRSPPQNIPNPYLED
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 TVPINVCGGHSQQQSPTEKAGASGQPPSGPPGTGNEYGVSPRLPQGLPAHPRPVTAYDGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TVPINVCGGHSQQQSPTEKAGASGQPPSGPPGTGNEYGVSPRLPQGLPAHPRPVTAYDGF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 VQYIPFDDPRLRHFKLAQPQGFCEDIKLDDKSYNSSPVTAQEPAHGGMQPDGAIWNPQSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VQYIPFDDPRLRHFKLAQPQGFCEDIKLDDKSYNSSPVTAQEPAHGGMQPDGAIWNPQSL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 IPPSGDERGLVLADSSPRWLWGQPPGDGENSGLPNQRDRCVARGQWPDVRGSQHGHTGRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IPPSGDERGLVLADSSPRWLWGQPPGDGENSGLPNQRDRCVARGQWPDVRGSQHGHTGRQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 VSSPYSQGESTCETQTKLKKFQTGTRTKKSSKKKMNETIFCLVSIPVKSESHLPDRDMDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VSSPYSQGESTCETQTKLKKFQTGTRTKKSSKKKMNETIFCLVSIPVKSESHLPDRDMDN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 NDLKPSADQKNGSDKSPALQEQSLLSMSSTDLELQALTGSMGGRTEFQKQDLGEPEEDRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NDLKPSADQKNGSDKSPALQEQSLLSMSSTDLELQALTGSMGGRTEFQKQDLGEPEEDRQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 TNDLSFIHLTKHRELKHSGSWPGHRYRDQQTQTSFSEEPQSSQLLPGAKLGGPSRAALSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TNDLSFIHLTKHRELKHSGSWPGHRYRDQQTQTSFSEEPQSSQLLPGAKLGGPSRAALSP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 KCSDPAASEAQTHTAFPTGDHKQRPSARNLKGHRSLSPSSNSAFSRTSLSVDQAPTPKAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KCSDPAASEAQTHTAFPTGDHKQRPSARNLKGHRSLSPSSNSAFSRTSLSVDQAPTPKAG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 RSQPCVDVHGLGAHPGPKREVVKGEPTGPCNSKQLFGQFLLKPVSRRPWDLISQLESFNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RSQPCVDVHGLGAHPGPKREVVKGEPTGPCNSKQLFGQFLLKPVSRRPWDLISQLESFNK
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 ELQEEEESSSSSSSSSSSSEESEAEPQQENRAHCRQEDVGFRGNSPEMRVEPQPRMWVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ELQEEEESSSSSSSSSSSSEESEAEPQQENRAHCRQEDVGFRGNSPEMRVEPQPRMWVPE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 SPVCRSGRGESKSESWSEELQPGHPRAWPPSPGRFRVEEGGGAPFCSADGSTSAEKGHLE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS41 SPVCRSGRGESKSESWSEELQPGHPRAWPPSPGRFRVEEGGGAPFCSADGSTSAEKRHLE
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 VSNGMDELAGSPFPVTRMSSRSSDAKPLPASYPAEPREPQESPKITSAFSSVKPSEAVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VSNGMDELAGSPFPVTRMSSRSSDAKPLPASYPAEPREPQESPKITSAFSSVKPSEAVPR
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 KFDSGGERGAGLPLSLSNKNRGLSAPDLRSVGLTPGQEQGASELEGSLGEASTIEIPPGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KFDSGGERGAGLPLSLSNKNRGLSAPDLRSVGLTPGQEQGASELEGSLGEASTIEIPPGE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA1 SLQARAARILGIEVAVESLLPGIRRAGQNQPAEPDASACTPESPQEELLSRPAPADVPRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SLQARAARILGIEVAVESLLPGIRRAGQNQPAEPDASACTPESPQEELLSRPAPADVPRV
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA1 STDAFYGRRKCGWTKSPLFVGDRDSARRAPQAFEHSDVDGVVTSTDPVPEPEPSPLESKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 STDAFYGRRKCGWTKSPLFVGDRDSARRAPQAFEHSDVDGVVTSTDPVPEPEPSPLESKF
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA1 FEQKDVETKPPFRSTLFHFVERTPSVAGSEKRLRSPSKVIESLQEKLASPPRRADPDRLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FEQKDVETKPPFRSTLFHFVERTPSVAGSEKRLRSPSKVIESLQEKLASPPRRADPDRLM
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA1 RMKEVSSVSRMRVLSFRNADSQEDAEELKATTRGQAGLPGGLVSPGSGDRAQRLGHSLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RMKEVSSVSRMRVLSFRNADSQEDAEELKATTRGQAGLPGGLVSPGSGDRAQRLGHSLSV
1270 1280 1290 1300 1310 1320
1330 1340 1350
pF1KA1 SKDSISREEKEHPAAQKEKSMDQDFWCPDSYDPSRVERV
:::::::::::::::::::::::::::::::::::::::
CCDS41 SKDSISREEKEHPAAQKEKSMDQDFWCPDSYDPSRVERV
1330 1340 1350
1359 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 11:08:20 2016 done: Thu Nov 3 11:08:21 2016
Total Scan time: 6.830 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]