Result of FASTA (ccds) for
pF1KA1503
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1503, 790 aa
1>>>pF1KA1503 790 - 790 aa - 790 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7474+/- 0.001; mu= 13.2135+/- 0.060
mean_var=87.9179+/-17.826, 0's: 0 Z-trim(105.5): 26 B-trim: 5 in 1/50
Lambda= 0.136784
statistics sampled from 8418 (8437) to 8418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.259), width: 16
Scan time: 3.060
The best scores are: opt bits E(32554)
CCDS32551.1 DNAH2 gene_id:146754|Hs108|chr17 (4427) 4244 848.2 0
CCDS76937.1 DNAH2 gene_id:146754|Hs108|chr17 ( 872) 2757 554.6 2.5e-157
CCDS9255.2 DNAH10 gene_id:196385|Hs108|chr12 (4471) 306 71.1 4.5e-11
>>CCDS32551.1 DNAH2 gene_id:146754|Hs108|chr17 (4427 aa)
initn: 4244 init1: 4244 opt: 4244 Z-score: 4512.3 bits: 848.2 E(32554): 0
Smith-Waterman score: 4244; 100.0% identity (100.0% similar) in 635 aa overlap (1-635:1-635)
10 20 30 40 50 60
pF1KA1 MSSKAEKKQRLSGRGSSQASWSGRATRAAVATQEQGNAPAVSEPELQAELPKEEPEPRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSSKAEKKQRLSGRGSSQASWSGRATRAAVATQEQGNAPAVSEPELQAELPKEEPEPRLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 GPQAQSEESVEPEADVKPLFLSRAALTGLADAVWTQEHDAILEHFAQDPTESILTIFIDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GPQAQSEESVEPEADVKPLFLSRAALTGLADAVWTQEHDAILEHFAQDPTESILTIFIDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 CFGLKLELGMPVQTQNQLVYFIRQAPVPITWENFEATVQFGTVRGPYIPALLRLLGGVFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CFGLKLELGMPVQTQNQLVYFIRQAPVPITWENFEATVQFGTVRGPYIPALLRLLGGVFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 PQIFANTGWPESIRNHFASHLHKFLACLTDTRYKLEGHTVLYIPAEAMNMKPEMVIKDKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PQIFANTGWPESIRNHFASHLHKFLACLTDTRYKLEGHTVLYIPAEAMNMKPEMVIKDKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 LVQRLETSMIHWTRQIKEMLSAQETVETGENLGPLEEIEFWRNRCMDLSGISKQLVKKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LVQRLETSMIHWTRQIKEMLSAQETVETGENLGPLEEIEFWRNRCMDLSGISKQLVKKGV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 KHVESILHLAKSSYLAPFMKLAQQIQDGSRQAQSNLTFLSILKEPYQELAFMKPKDISSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KHVESILHLAKSSYLAPFMKLAQQIQDGSRQAQSNLTFLSILKEPYQELAFMKPKDISSK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 LPKLISLIRIIWVNSPHYNTRERLTSLFRKVCDCQYHFARWEDGKQGPLPCFFGAQGPQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LPKLISLIRIIWVNSPHYNTRERLTSLFRKVCDCQYHFARWEDGKQGPLPCFFGAQGPQI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 TRNLLEIEDIFHKNLHTLRAVRGGILDVKNTCWHEDYNKFRAGIKDLEVMTQNLITSAFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TRNLLEIEDIFHKNLHTLRAVRGGILDVKNTCWHEDYNKFRAGIKDLEVMTQNLITSAFE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LVRDVPHGVLLLDTFHRLASREAIKRTYDKKAVDLYMLFNSELALVNRERNKKWPDLEPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LVRDVPHGVLLLDTFHRLASREAIKRTYDKKAVDLYMLFNSELALVNRERNKKWPDLEPY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 VAQYSGKARWVHILRRRIDRVMTCLAGAHFLPRIGTGKESVHTYQQMVQAIDELVRKTFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VAQYSGKARWVHILRRRIDRVMTCLAGAHFLPRIGTGKESVHTYQQMVQAIDELVRKTFQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 EWTSSLDKDCIRRLDTPLLRISQEKAGMLDVNFDKYRSHLAPFPYTPLLQLSQEFHSHLL
:::::::::::::::::::::::::::::::::::
CCDS32 EWTSSLDKDCIRRLDTPLLRISQEKAGMLDVNFDKSLLILFAEIDYWERLLFETPHYVVN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 TPLFIILSLSHTICLLSSFYFFFSSFIFVSPHLPPCYQHFNFTTYLKTQQNKTMIGQARW
CCDS32 VAERAEDLRILRENLLLVARDYNRIIAMLSPDEQALFKERIRLLDKKIHPGLKKLHWALK
670 680 690 700 710 720
>>CCDS76937.1 DNAH2 gene_id:146754|Hs108|chr17 (872 aa)
initn: 2757 init1: 2757 opt: 2757 Z-score: 2938.1 bits: 554.6 E(32554): 2.5e-157
Smith-Waterman score: 4837; 89.8% identity (89.9% similar) in 822 aa overlap (51-790:51-872)
30 40 50 60 70 80
pF1KA1 WSGRATRAAVATQEQGNAPAVSEPELQAELPKEEPEPRLEGPQAQSEESVEPEADVKPLF
::::::::::::::::::::::::::::::
CCDS76 WSGRATRAAVATQEQGNAPAVSEPELQAELPKEEPEPRLEGPQAQSEESVEPEADVKPLF
30 40 50 60 70 80
90 100 110 120 130 140
pF1KA1 LSRAALTGLADAVWTQEHDAILEHFAQDPTESILTIFIDPCFGLKLELGMPVQTQNQLVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LSRAALTGLADAVWTQEHDAILEHFAQDPTESILTIFIDPCFGLKLELGMPVQTQNQLVY
90 100 110 120 130 140
150 160 170 180 190 200
pF1KA1 FIRQAPVPITWENFEATVQFGTVRGPYIPALLRLLGGVFAPQIFANTGWPESIRNHFASH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FIRQAPVPITWENFEATVQFGTVRGPYIPALLRLLGGVFAPQIFANTGWPESIRNHFASH
150 160 170 180 190 200
210 220 230 240 250 260
pF1KA1 LHKFLACLTDTRYKLEGHTVLYIPAEAMNMKPEMVIKDKELVQRLETSMIHWTRQIKEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LHKFLACLTDTRYKLEGHTVLYIPAEAMNMKPEMVIKDKELVQRLETSMIHWTRQIKEML
210 220 230 240 250 260
270 280 290 300 310 320
pF1KA1 SAQETVETGENLGPLEEIEFWRNRCMDLSGISKQLVKKGVKHVESILHLAKSSYLAPFMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SAQETVETGENLGPLEEIEFWRNRCMDLSGISKQLVKKGVKHVESILHLAKSSYLAPFMK
270 280 290 300 310 320
330 340 350 360 370 380
pF1KA1 LAQQIQDGSRQAQSNLTFLSILKEPYQELAFMKPKDISSKLPKLISLIRIIWVNSPHYNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LAQQIQDGSRQAQSNLTFLSILKEPYQELAFMKPKDISSKLPKLISLIRIIWVNSPHYNT
330 340 350 360 370 380
390
pF1KA1 RERLTSLFRK--------------------------------------------------
::::::::::
CCDS76 RERLTSLFRKMSNEIIRLCCHAISLDRIFEGYVSSSKEDLQGCILCCHAWKDHYVQAVQM
390 400 410 420 430 440
400 410
pF1KA1 --------------------------------VCDCQYHFARWEDGKQGPLPCFFGAQGP
::::::::::::::::::::::::::::
CCDS76 HIQFSSRGWVLDQTSIFAQVDAFVQRCKDLIEVCDCQYHFARWEDGKQGPLPCFFGAQGP
450 460 470 480 490 500
420 430 440 450 460 470
pF1KA1 QITRNLLEIEDIFHKNLHTLRAVRGGILDVKNTCWHEDYNKFRAGIKDLEVMTQNLITSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QITRNLLEIEDIFHKNLHTLRAVRGGILDVKNTCWHEDYNKFRAGIKDLEVMTQNLITSA
510 520 530 540 550 560
480 490 500 510 520 530
pF1KA1 FELVRDVPHGVLLLDTFHRLASREAIKRTYDKKAVDLYMLFNSELALVNRERNKKWPDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FELVRDVPHGVLLLDTFHRLASREAIKRTYDKKAVDLYMLFNSELALVNRERNKKWPDLE
570 580 590 600 610 620
540 550 560 570 580 590
pF1KA1 PYVAQYSGKARWVHILRRRIDRVMTCLAGAHFLPRIGTGKESVHTYQQMVQAIDELVRKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PYVAQYSGKARWVHILRRRIDRVMTCLAGAHFLPRIGTGKESVHTYQQMVQAIDELVRKT
630 640 650 660 670 680
600 610 620 630 640 650
pF1KA1 FQEWTSSLDKDCIRRLDTPLLRISQEKAGMLDVNFDKYRSHLAPFPYTPLLQLSQEFHSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FQEWTSSLDKDCIRRLDTPLLRISQEKAGMLDVNFDKYRSHLAPFPYTPLLQLSQEFHSH
690 700 710 720 730 740
660 670 680 690 700 710
pF1KA1 LLTPLFIILSLSHTICLLSSFYFFFSSFIFVSPHLPPCYQHFNFTTYLKTQQNKTMIGQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LLTPLFIILSLSHTICLLSSFYFFFSSFIFVSPHLPPCYQHFNFTTYLKTQQNKTMIGQA
750 760 770 780 790 800
720 730 740 750 760 770
pF1KA1 RWLTPVIPALWEAGVGASLEPRSLRTAWATWQNPVSAKNTKISWAWWHKPVVSATWEGEV
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RWLTPVIPALWEAEVGASLEPRSLRTAWATWQNPVSAKNTKISWAWWHKPVVSATWEGEV
810 820 830 840 850 860
780 790
pF1KA1 GGSPEPGRRRLQ
::::::::.:::
CCDS76 GGSPEPGRQRLQ
870
>>CCDS9255.2 DNAH10 gene_id:196385|Hs108|chr12 (4471 aa)
initn: 268 init1: 129 opt: 306 Z-score: 312.3 bits: 71.1 E(32554): 4.5e-11
Smith-Waterman score: 306; 28.0% identity (61.5% similar) in 200 aa overlap (193-391:196-394)
170 180 190 200 210 220
pF1KA1 VRGPYIPALLRLLGGVFAPQIFANTGWPESIRNHFASHLHKFLACLTDTRYKLEGHTVLY
::..: ...:: . . : .:::. :
CCDS92 TSGEVSNSSEHESDLPPMPGEAVEYHSIQLIRDEFLMNVQKFASNIQRTMQQLEGEIKLE
170 180 190 200 210 220
230 240 250 260 270 280
pF1KA1 IPAEAMNMKPEMVIKDKELVQRLETSMIHWTRQIKEMLSAQETVETGENLGPLEEIEFWR
.: ... . . : : :. :: .:.: ::. . :: .: .. ::: ::::::
CCDS92 MPIISVEGEVSDLAADPETVDILEQCVINWLNQISTAVEAQ-LKKTPQGKGPLAEIEFWR
230 240 250 260 270 280
290 300 310 320 330 340
pF1KA1 NRCMDLSGISKQLVKKGVKHVESILHLAKSSYLAPFMKLAQQIQDGSRQAQSNLTFLSIL
.: ::.. .: :..: .... . : .: .. . .. .:..:. ::: .
CCDS92 ERNATLSALHEQTKLPIVRKVLDVIKESDSMLVANLQPVFTELFKFHTEASDNVRFLSTV
290 300 310 320 330 340
350 360 370 380 390 400
pF1KA1 KEPYQELAFMKPKDIS-SKLPKLISLIRIIWVNSPHYNTRERLTSLFRKVCDCQYHFARW
.. ..... . . . .: ..: .:..:. : ::: ::. :....
CCDS92 ERYFKNITHGSGFHVVLDTIPAMMSALRMVWIISRHYNKDERMIPLMERIAWEIAERVCR
350 360 370 380 390 400
410 420 430 440 450 460
pF1KA1 EDGKQGPLPCFFGAQGPQITRNLLEIEDIFHKNLHTLRAVRGGILDVKNTCWHEDYNKFR
CCDS92 VVNLRTLFKENRASAQSKTLEARNTLRLWKKAYFDTRAKIEASGREDRWEFDRKRLFERT
410 420 430 440 450 460
790 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:05:59 2016 done: Thu Nov 3 20:06:00 2016
Total Scan time: 3.060 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]