Result of FASTA (omim) for
pF1KA1579
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1579, 678 aa
1>>>pF1KA1579 678 - 678 aa - 678 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8450+/-0.0004; mu= 15.8386+/- 0.025
mean_var=194.5666+/-42.111, 0's: 0 Z-trim(117.8): 93 B-trim: 767 in 1/54
Lambda= 0.091948
statistics sampled from 30097 (30192) to 30097 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.354), width: 16
Scan time: 12.550
The best scores are: opt bits E(85289)
NP_060681 (OMIM: 609953) ribonucleoprotein PTB-bin ( 678) 4504 610.6 6.1e-174
XP_011540008 (OMIM: 609953) PREDICTED: ribonucleop ( 473) 2654 365.0 3.7e-100
XP_006710801 (OMIM: 609953) PREDICTED: ribonucleop ( 691) 2654 365.2 4.7e-100
XP_011525973 (OMIM: 609950) PREDICTED: ribonucleop ( 731) 1356 193.0 3.3e-48
NP_597709 (OMIM: 609950) ribonucleoprotein PTB-bin ( 756) 1353 192.7 4.4e-48
XP_011539197 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 219 41.9 0.0055
XP_011539196 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 219 41.9 0.0055
XP_011539195 (OMIM: 168360) PREDICTED: ELAV-like p ( 380) 219 41.9 0.0055
NP_068771 (OMIM: 168360) ELAV-like protein 4 isofo ( 380) 219 41.9 0.0055
NP_001311137 (OMIM: 168360) ELAV-like protein 4 is ( 383) 219 41.9 0.0055
NP_001311142 (OMIM: 168360) ELAV-like protein 4 is ( 385) 219 41.9 0.0055
XP_006710474 (OMIM: 168360) PREDICTED: ELAV-like p ( 393) 219 41.9 0.0056
XP_011539191 (OMIM: 168360) PREDICTED: ELAV-like p ( 416) 219 41.9 0.0058
NP_001311138 (OMIM: 168360) ELAV-like protein 4 is ( 352) 217 41.6 0.0063
NP_001311144 (OMIM: 168360) ELAV-like protein 4 is ( 358) 217 41.6 0.0064
XP_016856028 (OMIM: 168360) PREDICTED: ELAV-like p ( 359) 217 41.6 0.0064
NP_001311143 (OMIM: 168360) ELAV-like protein 4 is ( 365) 217 41.6 0.0064
NP_001311141 (OMIM: 168360) ELAV-like protein 4 is ( 365) 217 41.6 0.0064
NP_001138248 (OMIM: 168360) ELAV-like protein 4 is ( 366) 217 41.6 0.0065
NP_001138246 (OMIM: 168360) ELAV-like protein 4 is ( 366) 217 41.6 0.0065
NP_001138249 (OMIM: 168360) ELAV-like protein 4 is ( 369) 217 41.6 0.0065
NP_001281277 (OMIM: 168360) ELAV-like protein 4 is ( 371) 217 41.6 0.0065
XP_016856027 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 217 41.6 0.0066
XP_011539192 (OMIM: 168360) PREDICTED: ELAV-like p ( 389) 217 41.6 0.0067
NP_001138247 (OMIM: 168360) ELAV-like protein 4 is ( 402) 217 41.6 0.0068
>>NP_060681 (OMIM: 609953) ribonucleoprotein PTB-binding (678 aa)
initn: 4504 init1: 4504 opt: 4504 Z-score: 3243.7 bits: 610.6 E(85289): 6.1e-174
Smith-Waterman score: 4504; 100.0% identity (100.0% similar) in 678 aa overlap (1-678:1-678)
10 20 30 40 50 60
pF1KA1 MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 MQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 QMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 HSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 DYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 KVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 LCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLAQQQLMKFENIHTNNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLAQQQLMKFENIHTNNK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 PGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTTITAGMGMLPFFPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTTITAGMGMLPFFPN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 QHIAGQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSLLVGHHKQQQSQPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QHIAGQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSLLVGHHKQQQSQPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 GTEISSGAASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPASKTTLHKTGIASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GTEISSGAASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPASKTTLHKTGIASS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 ILDAISQGSESQHALEKCIAYSPPFGDYAQVSSLRNEKRGSSYLISAPEGGSVECVDQHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ILDAISQGSESQHALEKCIAYSPPFGDYAQVSSLRNEKRGSSYLISAPEGGSVECVDQHS
610 620 630 640 650 660
670
pF1KA1 QGTGAYYMETYLKKKRVY
::::::::::::::::::
NP_060 QGTGAYYMETYLKKKRVY
670
>>XP_011540008 (OMIM: 609953) PREDICTED: ribonucleoprote (473 aa)
initn: 3052 init1: 2654 opt: 2654 Z-score: 1919.2 bits: 365.0 E(85289): 3.7e-100
Smith-Waterman score: 3022; 97.0% identity (97.2% similar) in 471 aa overlap (1-458:1-471)
10 20 30 40 50 60
pF1KA1 MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 MQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 QMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 HSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 DYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 KVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQ
310 320 330 340 350 360
370 380 390 400
pF1KA1 LCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQ-------------NLSHIPLAQQ
::::::::::::::::::::::::::::::::::::: ::::::::::
XP_011 LCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQSSVMGNTSNLFLQNLSHIPLAQQ
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA1 QLMKFENIHTNNKPGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTT
::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_011 QLMKFENIHTNNKPGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKSCL
430 440 450 460 470
470 480 490 500 510 520
pF1KA1 ITAGMGMLPFFPNQHIAGQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSL
>>XP_006710801 (OMIM: 609953) PREDICTED: ribonucleoprote (691 aa)
initn: 2694 init1: 2654 opt: 2654 Z-score: 1917.3 bits: 365.2 E(85289): 4.7e-100
Smith-Waterman score: 4468; 98.1% identity (98.1% similar) in 691 aa overlap (1-678:1-691)
10 20 30 40 50 60
pF1KA1 MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 MQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 QMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 HSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 DYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 KVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQ
310 320 330 340 350 360
370 380 390 400
pF1KA1 LCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQ-------------NLSHIPLAQQ
::::::::::::::::::::::::::::::::::::: ::::::::::
XP_006 LCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQSSVMGNTSNLFLQNLSHIPLAQQ
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA1 QLMKFENIHTNNKPGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLMKFENIHTNNKPGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTT
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA1 ITAGMGMLPFFPNQHIAGQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ITAGMGMLPFFPNQHIAGQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSL
490 500 510 520 530 540
530 540 550 560 570 580
pF1KA1 LVGHHKQQQSQPKGTEISSGAASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LVGHHKQQQSQPKGTEISSGAASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPA
550 560 570 580 590 600
590 600 610 620 630 640
pF1KA1 SKTTLHKTGIASSILDAISQGSESQHALEKCIAYSPPFGDYAQVSSLRNEKRGSSYLISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SKTTLHKTGIASSILDAISQGSESQHALEKCIAYSPPFGDYAQVSSLRNEKRGSSYLISA
610 620 630 640 650 660
650 660 670
pF1KA1 PEGGSVECVDQHSQGTGAYYMETYLKKKRVY
:::::::::::::::::::::::::::::::
XP_006 PEGGSVECVDQHSQGTGAYYMETYLKKKRVY
670 680 690
>>XP_011525973 (OMIM: 609950) PREDICTED: ribonucleoprote (731 aa)
initn: 1532 init1: 1276 opt: 1356 Z-score: 986.5 bits: 193.0 E(85289): 3.3e-48
Smith-Waterman score: 1472; 42.5% identity (64.6% similar) in 656 aa overlap (22-664:30-624)
10 20 30 40 50
pF1KA1 MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPE
:.: : . .. .: :.. ::. : ::
XP_011 MPLRPGSLVPEGAGFPKMAADVSVTHRPPLSPKSGAEVEAGDA-AERRAPEEELPPLDPE
10 20 30 40 50
60 70 80 90 100 110
pF1KA1 EVAARLQRMQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLN
:. ::.. .:.. ::::::...:: : . :::::::.::.::::.::. : ::::::::
XP_011 EIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KA1 GEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCF
::::. ::. ::: .: ..: :::::::::::..:.: :.:...:::::: .:..::::
XP_011 GEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KA1 LVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKC
::::: ::.::::::.:::::: ::.:. .:::. :: .:...: :.. :. :.::.:
XP_011 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRC
180 190 200 210 220 230
240 250 260 270 280 290
pF1KA1 LCIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAA
::.:.:: . : . : . .:.::.:.::::: . . . ::::.:: :::.:::.:: :
XP_011 LCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KA1 DGMTIKGSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAM
::... ::...::::::: :::: :::::::: . . :::::::: .:....:. :
XP_011 DGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSAS
300 310 320 330 340 350
360 370 380 390 400 410
pF1KA1 LQVLLQPQLCGRAV-KPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLAQQQLMK
::.::.: : : : : ..::.: ..: : .:..: :.:.: : : .:
XP_011 LQLLLNPLLHGSAGGKQGLLGAPPAMPLLNGPALSTALLQLA-----------LQTQGQK
360 370 380 390 400
420 430 440 450 460 470
pF1KA1 FENIHTNNKPGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTTITAG
:::.::. : .:: : . :: :: : ::
XP_011 --------KPGILGDSPLGALQP--GAQPANPLLGEL--------------P------AG
410 420 430
480 490 500 510 520
pF1KA1 MGMLPFFPNQHIAGQAGPGHSNTQEKQPATVGMAEGN---FSGSQPYLQSFPNLAAGSLL
:. : .: .. :. : :...: : :. .. . : : : :
XP_011 GGLPPELPPRR--GKPPP-------LLPSVLGPAGGDREALGLGPPAAQLTPPPAP----
440 450 460 470 480
530 540 550 560 570 580
pF1KA1 VGHHKQQQSQPKGTEISSGA-ASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPA
:: . : .: . .:: . .::::::::. :. :::::: :.::. :..:.
XP_011 VG---LRGSGLRGLQKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPASNLAAPG
490 500 510 520 530 540
590 600 610 620 630 640
pF1KA1 SKTTLHKT-GIASSILDAISQGS-ESQHALEKCIAYSPP--FGDYAQVSSLRNEKRG---
. .. :. . : .:. .:.. . .: ... : .: : :. :
XP_011 GGSSSSKAFQLKSRLLSPLSSARLPPEPGLSDSYSFDYPSDMGPRRLFSHPREPALGPHG
550 560 570 580 590 600
650 660 670
pF1KA1 -SSYLISAPEGGSVECVDQHSQGTGAYYMETYLKKKRVY
: . .: : .: : . : :.:
XP_011 PSRHKMSPPPSGFGE---RSSGGSGGGPLSHFYSGSPTSYFTSGLQAGLKQSHLSKAIGS
610 620 630 640 650
>>NP_597709 (OMIM: 609950) ribonucleoprotein PTB-binding (756 aa)
initn: 1519 init1: 1276 opt: 1353 Z-score: 984.2 bits: 192.7 E(85289): 4.4e-48
Smith-Waterman score: 1448; 45.2% identity (67.0% similar) in 573 aa overlap (22-589:30-544)
10 20 30 40 50
pF1KA1 MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPE
:.: : . .. .: :.. ::. : ::
NP_597 MPLRPGSLVPEGAGFPKMAADVSVTHRPPLSPKSGAEVEAGDA-AERRAPEEELPPLDPE
10 20 30 40 50
60 70 80 90 100 110
pF1KA1 EVAARLQRMQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLN
:. ::.. .:.. ::::::...:: : . :::::::.::.::::.::. : ::::::::
NP_597 EIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KA1 GEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCF
::::. ::. ::: .: ..: :::::::::::..:.: :.:...:::::: .:..::::
NP_597 GEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KA1 LVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKC
::::: ::.::::::.:::::: ::.:. .:::. :: .:...: :.. :. :.::.:
NP_597 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRC
180 190 200 210 220 230
240 250 260 270 280 290
pF1KA1 LCIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAA
::.:.:: . : . : . .:.::.:.::::: . . . ::::.:: :::.:::.:: :
NP_597 LCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KA1 DGMTIKGSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAM
::... ::...::::::: :::: :::::::: . . :::::::: .:....:. :
NP_597 DGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSAS
300 310 320 330 340 350
360 370 380 390 400 410
pF1KA1 LQVLLQPQLCGRAV-KPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLAQQQLMK
::.::.: : : : : ..::.: ..: : .:..: :.:.: : : .:
NP_597 LQLLLNPLLHGSAGGKQGLLGAPPAMPLLNGPALSTALLQLA-----------LQTQGQK
360 370 380 390 400
420 430 440 450 460 470
pF1KA1 FENIHTNNKPGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTTITAG
:::.::. : .:: : . :: :: : ::
NP_597 --------KPGILGDSPLGALQP--GAQPANPLLGEL--------------P------AG
410 420 430
480 490 500 510 520
pF1KA1 MGMLPFFPNQHIAGQAGPGHSNTQEKQPATVGMAEGN---FSGSQPYLQSFPNLAAGSLL
:. : .: .. :. : :...: : :. .. . : : : : .:
NP_597 GGLPPELPPRR--GKPPP-------LLPSVLGPAGGDREALGLGPPAAQLTPPPAPVGL-
440 450 460 470 480
530 540 550 560 570 580
pF1KA1 VGHHKQQQSQPKGTEISSGA-ASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPA
. : .: . .:: . .::::::::. :. :::::: :.::. :..
NP_597 ------RGSGLRGLQKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPASNLAGKE
490 500 510 520 530 540
590 600 610 620 630 640
pF1KA1 SKTTLHKTGIASSILDAISQGSESQHALEKCIAYSPPFGDYAQVSSLRNEKRGSSYLISA
..
NP_597 ARGWGGAGRSRRPAEGPPTNPPAPGGGSSSSKAFQLKSRLLSPLSSARLPPEPGLSDSYS
550 560 570 580 590 600
>>XP_011539197 (OMIM: 168360) PREDICTED: ELAV-like prote (379 aa)
initn: 209 init1: 153 opt: 219 Z-score: 174.6 bits: 41.9 E(85289): 0.0055
Smith-Waterman score: 219; 25.4% identity (58.1% similar) in 248 aa overlap (144-383:47-289)
120 130 140 150 160 170
pF1KA1 EQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFL
: .. .: ..:.:::. : . :.:: : :
XP_011 SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL
20 30 40 50 60 70
180 190 200 210 220 230
pF1KA1 VYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCL
: ...::.: :::::.:. : :: : : .: .... ... . : :.. :
XP_011 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS---SASIRDANL
80 90 100 110 120 130
240 250 260 270 280 290
pF1KA1 CIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVG-GFAVVEYSTAEQAEEVQQAA
.. ::. . . .:: :.::. . . .. :. . :. : . .... .:::. ..
XP_011 YVSGLPKTMTQ-KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL
140 150 160 170 180 190
300 310 320 330 340 350
pF1KA1 DGMTIKGSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMK--SLNNP
.:. .:. .. . :.... ::.. : . :.. : . .: .. .: :
XP_011 NGQKPSGATEPITVKFANNPSQKSSQALLS-QLYQSPNRRYPGPLHHQAQRFRLDNLLNM
200 210 220 230 240 250
360 370 380 390 400
pF1KA1 AM-LQVLLQ----PQLCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLA
:. .. :.. :. : .: .. :: . :
XP_011 AYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESV
260 270 280 290 300 310
410 420 430 440 450 460
pF1KA1 QQQLMKFENIHTNNKPGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQ
XP_011 LWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF
320 330 340 350 360 370
>>XP_011539196 (OMIM: 168360) PREDICTED: ELAV-like prote (379 aa)
initn: 209 init1: 153 opt: 219 Z-score: 174.6 bits: 41.9 E(85289): 0.0055
Smith-Waterman score: 219; 25.4% identity (58.1% similar) in 248 aa overlap (144-383:47-289)
120 130 140 150 160 170
pF1KA1 EQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFL
: .. .: ..:.:::. : . :.:: : :
XP_011 SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL
20 30 40 50 60 70
180 190 200 210 220 230
pF1KA1 VYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCL
: ...::.: :::::.:. : :: : : .: .... ... . : :.. :
XP_011 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS---SASIRDANL
80 90 100 110 120 130
240 250 260 270 280 290
pF1KA1 CIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVG-GFAVVEYSTAEQAEEVQQAA
.. ::. . . .:: :.::. . . .. :. . :. : . .... .:::. ..
XP_011 YVSGLPKTMTQ-KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL
140 150 160 170 180 190
300 310 320 330 340 350
pF1KA1 DGMTIKGSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMK--SLNNP
.:. .:. .. . :.... ::.. : . :.. : . .: .. .: :
XP_011 NGQKPSGATEPITVKFANNPSQKSSQALLS-QLYQSPNRRYPGPLHHQAQRFRLDNLLNM
200 210 220 230 240 250
360 370 380 390 400
pF1KA1 AM-LQVLLQ----PQLCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLA
:. .. :.. :. : .: .. :: . :
XP_011 AYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESV
260 270 280 290 300 310
410 420 430 440 450 460
pF1KA1 QQQLMKFENIHTNNKPGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQ
XP_011 LWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF
320 330 340 350 360 370
>>XP_011539195 (OMIM: 168360) PREDICTED: ELAV-like prote (380 aa)
initn: 209 init1: 153 opt: 219 Z-score: 174.6 bits: 41.9 E(85289): 0.0055
Smith-Waterman score: 219; 25.4% identity (58.1% similar) in 248 aa overlap (144-383:48-290)
120 130 140 150 160 170
pF1KA1 EQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFL
: .. .: ..:.:::. : . :.:: : :
XP_011 SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL
20 30 40 50 60 70
180 190 200 210 220 230
pF1KA1 VYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCL
: ...::.: :::::.:. : :: : : .: .... ... . : :.. :
XP_011 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS---SASIRDANL
80 90 100 110 120 130
240 250 260 270 280 290
pF1KA1 CIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVG-GFAVVEYSTAEQAEEVQQAA
.. ::. . . .:: :.::. . . .. :. . :. : . .... .:::. ..
XP_011 YVSGLPKTMTQ-KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL
140 150 160 170 180 190
300 310 320 330 340 350
pF1KA1 DGMTIKGSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMK--SLNNP
.:. .:. .. . :.... ::.. : . :.. : . .: .. .: :
XP_011 NGQKPSGATEPITVKFANNPSQKSSQALLS-QLYQSPNRRYPGPLHHQAQRFRLDNLLNM
200 210 220 230 240 250
360 370 380 390 400
pF1KA1 AM-LQVLLQ----PQLCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLA
:. .. :.. :. : .: .. :: . :
XP_011 AYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESV
260 270 280 290 300 310
410 420 430 440 450 460
pF1KA1 QQQLMKFENIHTNNKPGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQ
XP_011 LWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF
320 330 340 350 360 370
>>NP_068771 (OMIM: 168360) ELAV-like protein 4 isoform 1 (380 aa)
initn: 209 init1: 153 opt: 219 Z-score: 174.6 bits: 41.9 E(85289): 0.0055
Smith-Waterman score: 219; 25.4% identity (58.1% similar) in 248 aa overlap (144-383:48-290)
120 130 140 150 160 170
pF1KA1 EQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFL
: .. .: ..:.:::. : . :.:: : :
NP_068 SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL
20 30 40 50 60 70
180 190 200 210 220 230
pF1KA1 VYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCL
: ...::.: :::::.:. : :: : : .: .... ... . : :.. :
NP_068 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS---SASIRDANL
80 90 100 110 120 130
240 250 260 270 280 290
pF1KA1 CIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVG-GFAVVEYSTAEQAEEVQQAA
.. ::. . . .:: :.::. . . .. :. . :. : . .... .:::. ..
NP_068 YVSGLPKTMTQ-KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL
140 150 160 170 180 190
300 310 320 330 340 350
pF1KA1 DGMTIKGSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMK--SLNNP
.:. .:. .. . :.... ::.. : . :.. : . .: .. .: :
NP_068 NGQKPSGATEPITVKFANNPSQKSSQALLS-QLYQSPNRRYPGPLHHQAQRFRLDNLLNM
200 210 220 230 240 250
360 370 380 390 400
pF1KA1 AM-LQVLLQ----PQLCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLA
:. .. :.. :. : .: .. :: . :
NP_068 AYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESV
260 270 280 290 300 310
410 420 430 440 450 460
pF1KA1 QQQLMKFENIHTNNKPGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQ
NP_068 LWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF
320 330 340 350 360 370
>>NP_001311137 (OMIM: 168360) ELAV-like protein 4 isofor (383 aa)
initn: 209 init1: 153 opt: 219 Z-score: 174.6 bits: 41.9 E(85289): 0.0055
Smith-Waterman score: 219; 25.4% identity (58.1% similar) in 248 aa overlap (144-383:51-293)
120 130 140 150 160 170
pF1KA1 EQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFL
: .. .: ..:.:::. : . :.:: : :
NP_001 SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL
30 40 50 60 70 80
180 190 200 210 220 230
pF1KA1 VYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCL
: ...::.: :::::.:. : :: : : .: .... ... . : :.. :
NP_001 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS---SASIRDANL
90 100 110 120 130
240 250 260 270 280 290
pF1KA1 CIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVG-GFAVVEYSTAEQAEEVQQAA
.. ::. . . .:: :.::. . . .. :. . :. : . .... .:::. ..
NP_001 YVSGLPKTMTQ-KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL
140 150 160 170 180 190
300 310 320 330 340 350
pF1KA1 DGMTIKGSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMK--SLNNP
.:. .:. .. . :.... ::.. : . :.. : . .: .. .: :
NP_001 NGQKPSGATEPITVKFANNPSQKSSQALLS-QLYQSPNRRYPGPLHHQAQRFRLDNLLNM
200 210 220 230 240 250
360 370 380 390 400
pF1KA1 AM-LQVLLQ----PQLCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLA
:. .. :.. :. : .: .. :: . :
NP_001 AYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESV
260 270 280 290 300 310
410 420 430 440 450 460
pF1KA1 QQQLMKFENIHTNNKPGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQ
NP_001 LWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF
320 330 340 350 360 370
678 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:39:15 2016 done: Fri Nov 4 01:39:17 2016
Total Scan time: 12.550 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]