Result of FASTA (omim) for
pF1KA1598
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1598, 631 aa
1>>>pF1KA1598 631 - 631 aa - 631 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.8318+/-0.000445; mu= -17.4049+/- 0.028
mean_var=556.7016+/-113.978, 0's: 0 Z-trim(123.6): 8 B-trim: 0 in 0/61
Lambda= 0.054358
statistics sampled from 43580 (43608) to 43580 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.511), width: 16
Scan time: 9.560
The best scores are: opt bits E(85289)
NP_001120683 (OMIM: 611171) shootin-1 isoform a [H ( 631) 4025 330.4 1.2e-89
NP_001245227 (OMIM: 611171) shootin-1 isoform c [H ( 571) 3647 300.7 9e-81
XP_016871951 (OMIM: 611171) PREDICTED: shootin-1 i ( 571) 3647 300.7 9e-81
NP_001245228 (OMIM: 611171) shootin-1 isoform d [H ( 558) 3528 291.4 5.7e-78
XP_005270059 (OMIM: 611171) PREDICTED: shootin-1 i ( 573) 3528 291.4 5.8e-78
XP_006717994 (OMIM: 611171) PREDICTED: shootin-1 i ( 617) 3528 291.4 6.2e-78
NP_001245229 (OMIM: 611171) shootin-1 isoform e [H ( 498) 3150 261.7 4.4e-69
NP_060800 (OMIM: 611171) shootin-1 isoform b [Homo ( 456) 2878 240.4 1.1e-62
>>NP_001120683 (OMIM: 611171) shootin-1 isoform a [Homo (631 aa)
initn: 4025 init1: 4025 opt: 4025 Z-score: 1730.7 bits: 330.4 E(85289): 1.2e-89
Smith-Waterman score: 4025; 100.0% identity (100.0% similar) in 631 aa overlap (1-631:1-631)
10 20 30 40 50 60
pF1KA1 MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 MVIEEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVIEEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINID
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DEDSTTDTDGAAETCVSVQCQKQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEEVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEDSTTDTDGAAETCVSVQCQKQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEEVN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 KVKQEKTVLNSEVLEQRKVLEKCNRVSMLAVEEYEEMQVNLELEKDLRKKAESFAQEMFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVKQEKTVLNSEVLEQRKVLEKCNRVSMLAVEEYEEMQVNLELEKDLRKKAESFAQEMFI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 EQNKLKRQSHLLLQSSIPDQQLLKALDENAKLTQQLEEERIQHQQKVKELEEQLENETLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQNKLKRQSHLLLQSSIPDQQLLKALDENAKLTQQLEEERIQHQQKVKELEEQLENETLH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 KEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 PLPPPPPNPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLPPPPPNPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 VHLRPVNQTARPKTKPESSKGCESAVDELKGILGTLNKSTSSRSLKSLDPENSETELERI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VHLRPVNQTARPKTKPESSKGCESAVDELKGILGTLNKSTSSRSLKSLDPENSETELERI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LRRRKVTAEADSSSPTGILATSESKSMPVLGSVSSVTKTALNKKTLEAEFNSPSPPTPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRRRKVTAEADSSSPTGILATSESKSMPVLGSVSSVTKTALNKKTLEAEFNSPSPPTPEP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 GEGPRKLEGCTSSKVTFQPPSSIGCRKKYIDGEKQAEPVVVLDPVSTHEPQTKDQVAEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEGPRKLEGCTSSKVTFQPPSSIGCRKKYIDGEKQAEPVVVLDPVSTHEPQTKDQVAEKD
550 560 570 580 590 600
610 620 630
pF1KA1 PTQHKEDEGEIQPENKEDSIENVRETDSSNC
:::::::::::::::::::::::::::::::
NP_001 PTQHKEDEGEIQPENKEDSIENVRETDSSNC
610 620 630
>>NP_001245227 (OMIM: 611171) shootin-1 isoform c [Homo (571 aa)
initn: 3647 init1: 3647 opt: 3647 Z-score: 1571.1 bits: 300.7 E(85289): 9e-81
Smith-Waterman score: 3647; 100.0% identity (100.0% similar) in 571 aa overlap (61-631:1-571)
40 50 60 70 80 90
pF1KA1 NQKTKEKCDKIRQERDEAVKKLEEFQKISHMVIEEVNFMQNHLEIEKTCRESAEALATKL
::::::::::::::::::::::::::::::
NP_001 MVIEEVNFMQNHLEIEKTCRESAEALATKL
10 20 30
100 110 120 130 140 150
pF1KA1 NKENKTLKRISMLYMAKLGPDVITEEINIDDEDSTTDTDGAAETCVSVQCQKQIKELRDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKENKTLKRISMLYMAKLGPDVITEEINIDDEDSTTDTDGAAETCVSVQCQKQIKELRDQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KA1 IVSVQEEKKILAIELENLKSKLVEVIEEVNKVKQEKTVLNSEVLEQRKVLEKCNRVSMLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVSVQEEKKILAIELENLKSKLVEVIEEVNKVKQEKTVLNSEVLEQRKVLEKCNRVSMLA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KA1 VEEYEEMQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSSIPDQQLLKALDENA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEEYEEMQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSSIPDQQLLKALDENA
160 170 180 190 200 210
280 290 300 310 320 330
pF1KA1 KLTQQLEEERIQHQQKVKELEEQLENETLHKEIHNLKQQLELLEEDKKELELKYQNSEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLTQQLEEERIQHQQKVKELEEQLENETLHKEIHNLKQQLELLEEDKKELELKYQNSEEK
220 230 240 250 260 270
340 350 360 370 380 390
pF1KA1 ARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSLMSMIRKRSHPSGSGAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSLMSMIRKRSHPSGSGAKK
280 290 300 310 320 330
400 410 420 430 440 450
pF1KA1 EKATQPETTEEVTDLKRQAVEEMMDRIKKGVHLRPVNQTARPKTKPESSKGCESAVDELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKATQPETTEEVTDLKRQAVEEMMDRIKKGVHLRPVNQTARPKTKPESSKGCESAVDELK
340 350 360 370 380 390
460 470 480 490 500 510
pF1KA1 GILGTLNKSTSSRSLKSLDPENSETELERILRRRKVTAEADSSSPTGILATSESKSMPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GILGTLNKSTSSRSLKSLDPENSETELERILRRRKVTAEADSSSPTGILATSESKSMPVL
400 410 420 430 440 450
520 530 540 550 560 570
pF1KA1 GSVSSVTKTALNKKTLEAEFNSPSPPTPEPGEGPRKLEGCTSSKVTFQPPSSIGCRKKYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSVSSVTKTALNKKTLEAEFNSPSPPTPEPGEGPRKLEGCTSSKVTFQPPSSIGCRKKYI
460 470 480 490 500 510
580 590 600 610 620 630
pF1KA1 DGEKQAEPVVVLDPVSTHEPQTKDQVAEKDPTQHKEDEGEIQPENKEDSIENVRETDSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGEKQAEPVVVLDPVSTHEPQTKDQVAEKDPTQHKEDEGEIQPENKEDSIENVRETDSSN
520 530 540 550 560 570
pF1KA1 C
:
NP_001 C
>>XP_016871951 (OMIM: 611171) PREDICTED: shootin-1 isofo (571 aa)
initn: 3647 init1: 3647 opt: 3647 Z-score: 1571.1 bits: 300.7 E(85289): 9e-81
Smith-Waterman score: 3647; 100.0% identity (100.0% similar) in 571 aa overlap (61-631:1-571)
40 50 60 70 80 90
pF1KA1 NQKTKEKCDKIRQERDEAVKKLEEFQKISHMVIEEVNFMQNHLEIEKTCRESAEALATKL
::::::::::::::::::::::::::::::
XP_016 MVIEEVNFMQNHLEIEKTCRESAEALATKL
10 20 30
100 110 120 130 140 150
pF1KA1 NKENKTLKRISMLYMAKLGPDVITEEINIDDEDSTTDTDGAAETCVSVQCQKQIKELRDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKENKTLKRISMLYMAKLGPDVITEEINIDDEDSTTDTDGAAETCVSVQCQKQIKELRDQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KA1 IVSVQEEKKILAIELENLKSKLVEVIEEVNKVKQEKTVLNSEVLEQRKVLEKCNRVSMLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVSVQEEKKILAIELENLKSKLVEVIEEVNKVKQEKTVLNSEVLEQRKVLEKCNRVSMLA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KA1 VEEYEEMQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSSIPDQQLLKALDENA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VEEYEEMQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSSIPDQQLLKALDENA
160 170 180 190 200 210
280 290 300 310 320 330
pF1KA1 KLTQQLEEERIQHQQKVKELEEQLENETLHKEIHNLKQQLELLEEDKKELELKYQNSEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLTQQLEEERIQHQQKVKELEEQLENETLHKEIHNLKQQLELLEEDKKELELKYQNSEEK
220 230 240 250 260 270
340 350 360 370 380 390
pF1KA1 ARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSLMSMIRKRSHPSGSGAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSLMSMIRKRSHPSGSGAKK
280 290 300 310 320 330
400 410 420 430 440 450
pF1KA1 EKATQPETTEEVTDLKRQAVEEMMDRIKKGVHLRPVNQTARPKTKPESSKGCESAVDELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKATQPETTEEVTDLKRQAVEEMMDRIKKGVHLRPVNQTARPKTKPESSKGCESAVDELK
340 350 360 370 380 390
460 470 480 490 500 510
pF1KA1 GILGTLNKSTSSRSLKSLDPENSETELERILRRRKVTAEADSSSPTGILATSESKSMPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GILGTLNKSTSSRSLKSLDPENSETELERILRRRKVTAEADSSSPTGILATSESKSMPVL
400 410 420 430 440 450
520 530 540 550 560 570
pF1KA1 GSVSSVTKTALNKKTLEAEFNSPSPPTPEPGEGPRKLEGCTSSKVTFQPPSSIGCRKKYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSVSSVTKTALNKKTLEAEFNSPSPPTPEPGEGPRKLEGCTSSKVTFQPPSSIGCRKKYI
460 470 480 490 500 510
580 590 600 610 620 630
pF1KA1 DGEKQAEPVVVLDPVSTHEPQTKDQVAEKDPTQHKEDEGEIQPENKEDSIENVRETDSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGEKQAEPVVVLDPVSTHEPQTKDQVAEKDPTQHKEDEGEIQPENKEDSIENVRETDSSN
520 530 540 550 560 570
pF1KA1 C
:
XP_016 C
>>NP_001245228 (OMIM: 611171) shootin-1 isoform d [Homo (558 aa)
initn: 3528 init1: 3528 opt: 3528 Z-score: 1520.8 bits: 291.4 E(85289): 5.7e-78
Smith-Waterman score: 3528; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558)
10 20 30 40 50 60
pF1KA1 MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 MVIEEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVIEEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINID
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DEDSTTDTDGAAETCVSVQCQKQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEEVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEDSTTDTDGAAETCVSVQCQKQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEEVN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 KVKQEKTVLNSEVLEQRKVLEKCNRVSMLAVEEYEEMQVNLELEKDLRKKAESFAQEMFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVKQEKTVLNSEVLEQRKVLEKCNRVSMLAVEEYEEMQVNLELEKDLRKKAESFAQEMFI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 EQNKLKRQSHLLLQSSIPDQQLLKALDENAKLTQQLEEERIQHQQKVKELEEQLENETLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQNKLKRQSHLLLQSSIPDQQLLKALDENAKLTQQLEEERIQHQQKVKELEEQLENETLH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 KEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 PLPPPPPNPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLPPPPPNPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 VHLRPVNQTARPKTKPESSKGCESAVDELKGILGTLNKSTSSRSLKSLDPENSETELERI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VHLRPVNQTARPKTKPESSKGCESAVDELKGILGTLNKSTSSRSLKSLDPENSETELERI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LRRRKVTAEADSSSPTGILATSESKSMPVLGSVSSVTKTALNKKTLEAEFNSPSPPTPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRRRKVTAEADSSSPTGILATSESKSMPVLGSVSSVTKTALNKKTLEAEFNSPSPPTPEP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 GEGPRKLEGCTSSKVTFQPPSSIGCRKKYIDGEKQAEPVVVLDPVSTHEPQTKDQVAEKD
::::::::::::::::::
NP_001 GEGPRKLEGCTSSKVTFQ
550
>>XP_005270059 (OMIM: 611171) PREDICTED: shootin-1 isofo (573 aa)
initn: 3528 init1: 3528 opt: 3528 Z-score: 1520.6 bits: 291.4 E(85289): 5.8e-78
Smith-Waterman score: 3528; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558)
10 20 30 40 50 60
pF1KA1 MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 MVIEEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVIEEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINID
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DEDSTTDTDGAAETCVSVQCQKQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEEVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEDSTTDTDGAAETCVSVQCQKQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEEVN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 KVKQEKTVLNSEVLEQRKVLEKCNRVSMLAVEEYEEMQVNLELEKDLRKKAESFAQEMFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KVKQEKTVLNSEVLEQRKVLEKCNRVSMLAVEEYEEMQVNLELEKDLRKKAESFAQEMFI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 EQNKLKRQSHLLLQSSIPDQQLLKALDENAKLTQQLEEERIQHQQKVKELEEQLENETLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQNKLKRQSHLLLQSSIPDQQLLKALDENAKLTQQLEEERIQHQQKVKELEEQLENETLH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 KEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 PLPPPPPNPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLPPPPPNPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 VHLRPVNQTARPKTKPESSKGCESAVDELKGILGTLNKSTSSRSLKSLDPENSETELERI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VHLRPVNQTARPKTKPESSKGCESAVDELKGILGTLNKSTSSRSLKSLDPENSETELERI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LRRRKVTAEADSSSPTGILATSESKSMPVLGSVSSVTKTALNKKTLEAEFNSPSPPTPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRRRKVTAEADSSSPTGILATSESKSMPVLGSVSSVTKTALNKKTLEAEFNSPSPPTPEP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 GEGPRKLEGCTSSKVTFQPPSSIGCRKKYIDGEKQAEPVVVLDPVSTHEPQTKDQVAEKD
::::::::::::::::::
XP_005 GEGPRKLEGCTSSKVTFQEILIGSPVNSLLLFI
550 560 570
>>XP_006717994 (OMIM: 611171) PREDICTED: shootin-1 isofo (617 aa)
initn: 3528 init1: 3528 opt: 3528 Z-score: 1520.2 bits: 291.4 E(85289): 6.2e-78
Smith-Waterman score: 3528; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558)
10 20 30 40 50 60
pF1KA1 MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 MVIEEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MVIEEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINID
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DEDSTTDTDGAAETCVSVQCQKQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEEVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DEDSTTDTDGAAETCVSVQCQKQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEEVN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 KVKQEKTVLNSEVLEQRKVLEKCNRVSMLAVEEYEEMQVNLELEKDLRKKAESFAQEMFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KVKQEKTVLNSEVLEQRKVLEKCNRVSMLAVEEYEEMQVNLELEKDLRKKAESFAQEMFI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 EQNKLKRQSHLLLQSSIPDQQLLKALDENAKLTQQLEEERIQHQQKVKELEEQLENETLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EQNKLKRQSHLLLQSSIPDQQLLKALDENAKLTQQLEEERIQHQQKVKELEEQLENETLH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 KEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 PLPPPPPNPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PLPPPPPNPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 VHLRPVNQTARPKTKPESSKGCESAVDELKGILGTLNKSTSSRSLKSLDPENSETELERI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VHLRPVNQTARPKTKPESSKGCESAVDELKGILGTLNKSTSSRSLKSLDPENSETELERI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LRRRKVTAEADSSSPTGILATSESKSMPVLGSVSSVTKTALNKKTLEAEFNSPSPPTPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LRRRKVTAEADSSSPTGILATSESKSMPVLGSVSSVTKTALNKKTLEAEFNSPSPPTPEP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 GEGPRKLEGCTSSKVTFQPPSSIGCRKKYIDGEKQAEPVVVLDPVSTHEPQTKDQVAEKD
::::::::::::::::::
XP_006 GEGPRKLEGCTSSKVTFQFMSFQFNQHPCIAAVEPREHFLEIFSPELMKKAFSRICAPPL
550 560 570 580 590 600
>>NP_001245229 (OMIM: 611171) shootin-1 isoform e [Homo (498 aa)
initn: 3150 init1: 3150 opt: 3150 Z-score: 1361.3 bits: 261.7 E(85289): 4.4e-69
Smith-Waterman score: 3150; 100.0% identity (100.0% similar) in 498 aa overlap (61-558:1-498)
40 50 60 70 80 90
pF1KA1 NQKTKEKCDKIRQERDEAVKKLEEFQKISHMVIEEVNFMQNHLEIEKTCRESAEALATKL
::::::::::::::::::::::::::::::
NP_001 MVIEEVNFMQNHLEIEKTCRESAEALATKL
10 20 30
100 110 120 130 140 150
pF1KA1 NKENKTLKRISMLYMAKLGPDVITEEINIDDEDSTTDTDGAAETCVSVQCQKQIKELRDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKENKTLKRISMLYMAKLGPDVITEEINIDDEDSTTDTDGAAETCVSVQCQKQIKELRDQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KA1 IVSVQEEKKILAIELENLKSKLVEVIEEVNKVKQEKTVLNSEVLEQRKVLEKCNRVSMLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVSVQEEKKILAIELENLKSKLVEVIEEVNKVKQEKTVLNSEVLEQRKVLEKCNRVSMLA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KA1 VEEYEEMQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSSIPDQQLLKALDENA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEEYEEMQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSSIPDQQLLKALDENA
160 170 180 190 200 210
280 290 300 310 320 330
pF1KA1 KLTQQLEEERIQHQQKVKELEEQLENETLHKEIHNLKQQLELLEEDKKELELKYQNSEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLTQQLEEERIQHQQKVKELEEQLENETLHKEIHNLKQQLELLEEDKKELELKYQNSEEK
220 230 240 250 260 270
340 350 360 370 380 390
pF1KA1 ARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSLMSMIRKRSHPSGSGAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSLMSMIRKRSHPSGSGAKK
280 290 300 310 320 330
400 410 420 430 440 450
pF1KA1 EKATQPETTEEVTDLKRQAVEEMMDRIKKGVHLRPVNQTARPKTKPESSKGCESAVDELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKATQPETTEEVTDLKRQAVEEMMDRIKKGVHLRPVNQTARPKTKPESSKGCESAVDELK
340 350 360 370 380 390
460 470 480 490 500 510
pF1KA1 GILGTLNKSTSSRSLKSLDPENSETELERILRRRKVTAEADSSSPTGILATSESKSMPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GILGTLNKSTSSRSLKSLDPENSETELERILRRRKVTAEADSSSPTGILATSESKSMPVL
400 410 420 430 440 450
520 530 540 550 560 570
pF1KA1 GSVSSVTKTALNKKTLEAEFNSPSPPTPEPGEGPRKLEGCTSSKVTFQPPSSIGCRKKYI
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSVSSVTKTALNKKTLEAEFNSPSPPTPEPGEGPRKLEGCTSSKVTFQ
460 470 480 490
580 590 600 610 620 630
pF1KA1 DGEKQAEPVVVLDPVSTHEPQTKDQVAEKDPTQHKEDEGEIQPENKEDSIENVRETDSSN
>>NP_060800 (OMIM: 611171) shootin-1 isoform b [Homo sap (456 aa)
initn: 3100 init1: 2878 opt: 2878 Z-score: 1246.5 bits: 240.4 E(85289): 1.1e-62
Smith-Waterman score: 2878; 99.6% identity (100.0% similar) in 455 aa overlap (1-455:1-455)
10 20 30 40 50 60
pF1KA1 MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 MVIEEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MVIEEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINID
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DEDSTTDTDGAAETCVSVQCQKQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEEVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DEDSTTDTDGAAETCVSVQCQKQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEEVN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 KVKQEKTVLNSEVLEQRKVLEKCNRVSMLAVEEYEEMQVNLELEKDLRKKAESFAQEMFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KVKQEKTVLNSEVLEQRKVLEKCNRVSMLAVEEYEEMQVNLELEKDLRKKAESFAQEMFI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 EQNKLKRQSHLLLQSSIPDQQLLKALDENAKLTQQLEEERIQHQQKVKELEEQLENETLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EQNKLKRQSHLLLQSSIPDQQLLKALDENAKLTQQLEEERIQHQQKVKELEEQLENETLH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 KEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 PLPPPPPNPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PLPPPPPNPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 VHLRPVNQTARPKTKPESSKGCESAVDELKGILGTLNKSTSSRSLKSLDPENSETELERI
:::::::::::::::::::::::::::::::::..
NP_060 VHLRPVNQTARPKTKPESSKGCESAVDELKGILASQ
430 440 450
490 500 510 520 530 540
pF1KA1 LRRRKVTAEADSSSPTGILATSESKSMPVLGSVSSVTKTALNKKTLEAEFNSPSPPTPEP
631 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 21:31:36 2016 done: Wed Nov 2 21:31:37 2016
Total Scan time: 9.560 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]