FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1668, 863 aa
  1>>>pF1KA1668 863 - 863 aa - 863 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.9972+/-0.00112; mu= -16.0846+/- 0.067
 mean_var=590.4700+/-120.353, 0's: 0 Z-trim(117.2): 100  B-trim: 0 in 0/52
 Lambda= 0.052781
 statistics sampled from 17857 (17952) to 17857 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.551), width:  16
 Scan time:  5.290

The best scores are:                                      opt bits E(32554)
CCDS13961.1 MICALL1 gene_id:85377|Hs108|chr22      ( 863) 5897 464.3 4.3e-130


>>CCDS13961.1 MICALL1 gene_id:85377|Hs108|chr22           (863 aa)
 initn: 5897 init1: 5897 opt: 5897  Z-score: 2449.1  bits: 464.3 E(32554): 4.3e-130
Smith-Waterman score: 5897; 100.0% identity (100.0% similar) in 863 aa overlap (1-863:1-863)

               10        20        30        40        50        60
pF1KA1 MAGPRGALLAWCRRQCEGYRGVEIRDLSSSFRDGLAFCAILHRHRPDLLDFDSLSKDNVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAGPRGALLAWCRRQCEGYRGVEIRDLSSSFRDGLAFCAILHRHRPDLLDFDSLSKDNVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 ENNRLAFEVAEKELGIPALLDPNDMVSMSVPDCLSIMTYVSQYYNHFCSPGQAGVSPPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ENNRLAFEVAEKELGIPALLDPNDMVSMSVPDCLSIMTYVSQYYNHFCSPGQAGVSPPRK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 GLAPCSPPSVAPTPVEPEDVAQGEELSSGSLSEQGTGQTPSSTCAACQQHVHLVQRYLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GLAPCSPPSVAPTPVEPEDVAQGEELSSGSLSEQGTGQTPSSTCAACQQHVHLVQRYLAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 GRLYHRHCFRCRRCSSTLLPGAYENGPEEGTFVCAEHCARLGPGTRSGTRPGPFSQPKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GRLYHRHCFRCRRCSSTLLPGAYENGPEEGTFVCAEHCARLGPGTRSGTRPGPFSQPKQQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 HQQQLAEDAKDVPGGGPSSSAPAGAEADGPKASPEARPQIPTKPRVPGKLQELASPPAGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HQQQLAEDAKDVPGGGPSSSAPAGAEADGPKASPEARPQIPTKPRVPGKLQELASPPAGR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 PTPAPRKASESTTPAPPTPRPRSSLQQENLVEQAGSSSLVNGRLHELPVPKPRGTPKPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PTPAPRKASESTTPAPPTPRPRSSLQQENLVEQAGSSSLVNGRLHELPVPKPRGTPKPSE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 GTPAPRKDPPWITLVQAEPKKKPAPLPPSSSPGPPSQDSRQVENGGTEEVAQPSPTASLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GTPAPRKDPPWITLVQAEPKKKPAPLPPSSSPGPPSQDSRQVENGGTEEVAQPSPTASLE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 SKPYNPFEEEEEDKEEEAPAAPSLATSPALGHPESTPKSLHPWYGITPTSSPKTKKRPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SKPYNPFEEEEEDKEEEAPAAPSLATSPALGHPESTPKSLHPWYGITPTSSPKTKKRPAP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 RAPSASPLALHASRLSHSEPPSATPSPALSVESLSSESASQTAGAELLEPPAVPKSSSEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RAPSASPLALHASRLSHSEPPSATPSPALSVESLSSESASQTAGAELLEPPAVPKSSSEP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 AVHAPGTPGNPVSLSTNSSLASSGELVEPRVEQMPQASPGLAPRTRGSSGPQPAKPCSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AVHAPGTPGNPVSLSTNSSLASSGELVEPRVEQMPQASPGLAPRTRGSSGPQPAKPCSGA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 TPTPLLLVGDRSPVPSPGSSSPQLQVKSSCKENPFNRKPSPAASPATKKATKGSKPVRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TPTPLLLVGDRSPVPSPGSSSPQLQVKSSCKENPFNRKPSPAASPATKKATKGSKPVRPP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 APGHGFPLIKRKVQADQYIPEEDIHGEMDTIERRLDALEHRGVLLEEKLRGGLNEGREDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 APGHGFPLIKRKVQADQYIPEEDIHGEMDTIERRLDALEHRGVLLEEKLRGGLNEGREDD
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 MLVDWFKLIHEKHLLVRRESELIYVFKQQNLEQRQADVEYELRCLLNKPEKDWTEEDRAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MLVDWFKLIHEKHLLVRRESELIYVFKQQNLEQRQADVEYELRCLLNKPEKDWTEEDRAR
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 EKVLMQELVTLIEQRNAIINCLDEDRQREEEEDKMLEAMIKKKEFQREAEPEGKKKGKFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EKVLMQELVTLIEQRNAIINCLDEDRQREEEEDKMLEAMIKKKEFQREAEPEGKKKGKFK
              790       800       810       820       830       840

              850       860   
pF1KA1 TMKMLKLLGNKRDAKSKSPRDKS
       :::::::::::::::::::::::
CCDS13 TMKMLKLLGNKRDAKSKSPRDKS
              850       860   




863 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:42:40 2016 done: Fri Nov  4 01:42:41 2016
 Total Scan time:  5.290 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]