Result of FASTA (ccds) for
pF1KA1673
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1673, 712 aa
1>>>pF1KA1673 712 - 712 aa - 712 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2142+/-0.000976; mu= 3.4486+/- 0.059
mean_var=238.7660+/-50.044, 0's: 0 Z-trim(113.5): 23 B-trim: 845 in 1/50
Lambda= 0.083002
statistics sampled from 14103 (14120) to 14103 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.434), width: 16
Scan time: 3.920
The best scores are: opt bits E(32554)
CCDS78086.1 CPEB4 gene_id:80315|Hs108|chr5 ( 712) 5006 612.8 5.7e-175
CCDS78087.1 CPEB4 gene_id:80315|Hs108|chr5 ( 704) 4926 603.2 4.3e-172
CCDS4390.1 CPEB4 gene_id:80315|Hs108|chr5 ( 729) 2815 350.4 5.5e-96
CCDS83044.1 CPEB4 gene_id:80315|Hs108|chr5 ( 322) 2245 281.9 1e-75
CCDS83043.1 CPEB4 gene_id:80315|Hs108|chr5 ( 339) 2149 270.4 3.1e-72
CCDS56326.1 CPEB2 gene_id:132864|Hs108|chr4 (1007) 2052 259.2 2.2e-68
CCDS56325.1 CPEB2 gene_id:132864|Hs108|chr4 (1034) 2051 259.1 2.5e-68
CCDS53553.1 CPEB3 gene_id:22849|Hs108|chr10 ( 684) 1981 250.5 6.1e-66
CCDS31246.1 CPEB3 gene_id:22849|Hs108|chr10 ( 698) 1965 248.6 2.3e-65
CCDS45330.2 CPEB1 gene_id:64506|Hs108|chr15 ( 486) 742 102.1 2.1e-21
CCDS45329.2 CPEB1 gene_id:64506|Hs108|chr15 ( 561) 742 102.1 2.4e-21
CCDS42072.2 CPEB1 gene_id:64506|Hs108|chr15 ( 491) 608 86.0 1.5e-16
>>CCDS78086.1 CPEB4 gene_id:80315|Hs108|chr5 (712 aa)
initn: 5006 init1: 5006 opt: 5006 Z-score: 3254.8 bits: 612.8 E(32554): 5.7e-175
Smith-Waterman score: 5006; 100.0% identity (100.0% similar) in 712 aa overlap (1-712:1-712)
10 20 30 40 50 60
pF1KA1 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKARTYGRRRGQSSLFPMED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKARTYGRRRGQSSLFPMED
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 GFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 IRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 IRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 LKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGG
610 620 630 640 650 660
670 680 690 700 710
pF1KA1 KFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
670 680 690 700 710
>>CCDS78087.1 CPEB4 gene_id:80315|Hs108|chr5 (704 aa)
initn: 2900 init1: 2806 opt: 4926 Z-score: 3203.1 bits: 603.2 E(32554): 4.3e-172
Smith-Waterman score: 4926; 98.9% identity (98.9% similar) in 712 aa overlap (1-712:1-704)
10 20 30 40 50 60
pF1KA1 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKARTYGRRRGQSSLFPMED
:::::::::::::::::::::::::::::::::::::::::: ::::::::::
CCDS78 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIK--------GQSSLFPMED
370 380 390 400 410
430 440 450 460 470 480
pF1KA1 GFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGP
420 430 440 450 460 470
490 500 510 520 530 540
pF1KA1 LIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQ
480 490 500 510 520 530
550 560 570 580 590 600
pF1KA1 IRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 IRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPE
540 550 560 570 580 590
610 620 630 640 650 660
pF1KA1 LKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGG
600 610 620 630 640 650
670 680 690 700 710
pF1KA1 KFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
660 670 680 690 700
>>CCDS4390.1 CPEB4 gene_id:80315|Hs108|chr5 (729 aa)
initn: 2812 init1: 2812 opt: 2815 Z-score: 1836.7 bits: 350.4 E(32554): 5.5e-96
Smith-Waterman score: 4962; 97.7% identity (97.7% similar) in 729 aa overlap (1-712:1-729)
10 20 30 40 50 60
pF1KA1 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
310 320 330 340 350 360
370 380 390 400
pF1KA1 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIK-----------------A
:::::::::::::::::::::::::::::::::::::::::: :
CCDS43 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKGRLNYSYPGSDSSLLINA
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA1 RTYGRRRGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RTYGRRRGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLP
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA1 PDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDG
490 500 510 520 530 540
530 540 550 560 570 580
pF1KA1 KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIM
550 560 570 580 590 600
590 600 610 620 630 640
pF1KA1 DRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPY
610 620 630 640 650 660
650 660 670 680 690 700
pF1KA1 VLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDR
670 680 690 700 710 720
710
pF1KA1 PRHISFRWN
:::::::::
CCDS43 PRHISFRWN
>>CCDS83044.1 CPEB4 gene_id:80315|Hs108|chr5 (322 aa)
initn: 2152 init1: 2152 opt: 2245 Z-score: 1472.7 bits: 281.9 E(32554): 1e-75
Smith-Waterman score: 2245; 97.6% identity (97.6% similar) in 330 aa overlap (383-712:1-322)
360 370 380 390 400 410
pF1KA1 SAFAPKSWMEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKARTYGRRRGQ
:::::::::::::::::::: ::
CCDS83 MHSLESSLIDIMRAENDTIK--------GQ
10 20
420 430 440 450 460 470
pF1KA1 SSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEIT
30 40 50 60 70 80
480 490 500 510 520 530
pF1KA1 ASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSP
90 100 110 120 130 140
540 550 560 570 580 590
pF1KA1 TIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCY
150 160 170 180 190 200
600 610 620 630 640 650
pF1KA1 AGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDE
210 220 230 240 250 260
660 670 680 690 700 710
pF1KA1 CQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 CQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
270 280 290 300 310 320
>>CCDS83043.1 CPEB4 gene_id:80315|Hs108|chr5 (339 aa)
initn: 2264 init1: 2149 opt: 2149 Z-score: 1410.3 bits: 270.4 E(32554): 3.1e-72
Smith-Waterman score: 2244; 95.9% identity (96.5% similar) in 339 aa overlap (383-712:1-339)
360 370 380 390 400
pF1KA1 SAFAPKSWMEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKAR---TY-GR
::::::::::::::::::::.: .: :
CCDS83 MHSLESSLIDIMRAENDTIKGRLNYSYPGS
10 20 30
410 420 430 440 450 460
pF1KA1 RR-----GQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLP
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DSSLLINGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLP
40 50 60 70 80 90
470 480 490 500 510 520
pF1KA1 PDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDG
100 110 120 130 140 150
530 540 550 560 570 580
pF1KA1 KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIM
160 170 180 190 200 210
590 600 610 620 630 640
pF1KA1 DRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPY
220 230 240 250 260 270
650 660 670 680 690 700
pF1KA1 VLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDR
280 290 300 310 320 330
710
pF1KA1 PRHISFRWN
:::::::::
CCDS83 PRHISFRWN
>>CCDS56326.1 CPEB2 gene_id:132864|Hs108|chr4 (1007 aa)
initn: 2214 init1: 1853 opt: 2052 Z-score: 1341.0 bits: 259.2 E(32554): 2.2e-68
Smith-Waterman score: 2419; 64.2% identity (76.2% similar) in 609 aa overlap (156-712:418-1007)
130 140 150 160 170 180
pF1KA1 NGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSSTIINE
:: :::.. : :. : . : : .
CCDS56 ASPPPQPQQPPPTQPQQQPPPPQQPPQPQPQPPGSSATTPGGGSGGSLSAMPPPSP--DS
390 400 410 420 430 440
190 200 210 220
pF1KA1 DASFFHQGGVPAASANNGALLFQNF----PHHVS----P-------GFGGSFS----PQI
. .:. :.: :. : :. : .: :: . : :::: :: :
CCDS56 ENGFY--PGLP--SSMNPAF-FPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPP
450 460 470 480 490 500
230 240 250 260 270 280
pF1KA1 GPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLAN-NLNKP---P
: ... :.. :. :.::::.::. :. :: : . . : ..:
CCDS56 PPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQ-QHQAAAAAFLQQRNSYNHHQPLLKQ
510 520 530 540 550
290 300 310 320 330 340
pF1KA1 SPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGIT-PLNSISPLKKNFASN
::::..:: :.: : : .::. .:::::: : :: .:.:::::: :..:
CCDS56 SPWSNHQS------SGW---GTGSMSWGAMHGRDHRRTGNMGIPGTMNQISPLKKPFSGN
560 570 580 590 600 610
350 360 370 380 390
pF1KA1 HIQLQKYARPSSAFAPKSWMEDSLNRADN----IFPFP---DRPRTFD---MHSLESSLI
: :..: . ...::::.::.. :.:: ..:. :: : .: :::::.:::
CCDS56 VIAPPKFTRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQVRMDRSRMYDSLNMHSLENSLI
620 630 640 650 660 670
400 410 420 430
pF1KA1 DIMRAENDTIK-----------------ARTYGRRRGQSSLFPMEDGFLDDGRGDQPLHS
::::::.: .: ::.::::::.:::::..::.::::..:: .
CCDS56 DIMRAEHDPLKGRLSYPHPGTDNLLMLNARSYGRRRGRSSLFPIDDGLLDDGHSDQV--G
680 690 700 710 720
440 450 460 470 480 490
pF1KA1 GLGSPHCFS-HQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKS
:.:: :.: ::::::.::.::::::::::::::::::::::::::::.:::::::::::
CCDS56 VLNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKS
730 740 750 760 770 780
500 510 520 530 540 550
pF1KA1 YFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVM
:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YFPPKGYAFLLFQEESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVM
790 800 810 820 830 840
560 570 580 590 600 610
pF1KA1 DGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFS
850 860 870 880 890 900
620 630 640 650 660 670
pF1KA1 NQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCL
:::::::::::::::::::.:::::::::::::::.::::::::::::::::::::::::
CCDS56 NQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGKFAPFFCANVTCL
910 920 930 940 950 960
680 690 700 710
pF1KA1 QYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
:::::.::: :::::::::::::::::.::::.: ::::
CCDS56 QYYCEFCWANIHSRAGREFHKPLVKEGADRPRQIHFRWN
970 980 990 1000
>>CCDS56325.1 CPEB2 gene_id:132864|Hs108|chr4 (1034 aa)
initn: 2214 init1: 1853 opt: 2051 Z-score: 1340.2 bits: 259.1 E(32554): 2.5e-68
Smith-Waterman score: 2366; 61.6% identity (73.1% similar) in 636 aa overlap (156-712:418-1034)
130 140 150 160 170 180
pF1KA1 NGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSSTIINE
:: :::.. : :. : . : : .
CCDS56 ASPPPQPQQPPPTQPQQQPPPPQQPPQPQPQPPGSSATTPGGGSGGSLSAMPPPSP--DS
390 400 410 420 430 440
190 200 210 220
pF1KA1 DASFFHQGGVPAASANNGALLFQNF----PHHVS----P-------GFGGSFS----PQI
. .:. :.: :. : :. : .: :: . : :::: :: :
CCDS56 ENGFY--PGLP--SSMNPAF-FPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPP
450 460 470 480 490 500
230 240 250 260 270 280
pF1KA1 GPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLAN-NLNKP---P
: ... :.. :. :.::::.::. :. :: : . . : ..:
CCDS56 PPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQ-QHQAAAAAFLQQRNSYNHHQPLLKQ
510 520 530 540 550
290 300 310 320 330 340
pF1KA1 SPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGIT-PLNSISPLKKNFASN
::::..:: :.: : : .::. .:::::: : :: .:.:::::: :..:
CCDS56 SPWSNHQS------SGW---GTGSMSWGAMHGRDHRRTGNMGIPGTMNQISPLKKPFSGN
560 570 580 590 600 610
350 360 370
pF1KA1 HIQLQKYARPSSAFAPKSWMEDSLNRADN----IFPF--------P--------------
: :..: . ...::::.::.. :.:: ..:. :
CCDS56 VIAPPKFTRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQVRSSLQLPAWGSDSLQDSWCTA
620 630 640 650 660 670
380 390 400
pF1KA1 --------DRPRTFD---MHSLESSLIDIMRAENDTIK-----------------ARTYG
:: : .: :::::.:::::::::.: .: ::.::
CCDS56 AGTSRIDQDRSRMYDSLNMHSLENSLIDIMRAEHDPLKGRLSYPHPGTDNLLMLNARSYG
680 690 700 710 720 730
410 420 430 440 450 460
pF1KA1 RRRGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFS-HQNGERVERYSRKVFVGGLPPDI
::::.:::::..::.::::..:: . :.:: :.: ::::::.::.:::::::::::::
CCDS56 RRRGRSSLFPIDDGLLDDGHSDQV--GVLNSPTCYSAHQNGERIERFSRKVFVGGLPPDI
740 750 760 770 780
470 480 490 500 510 520
pF1KA1 DEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLY
:::::::::::::::.::::::::::::::::::::::::.:::::::::::::::::::
CCDS56 DEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACIEEDGKLY
790 800 810 820 830 840
530 540 550 560 570 580
pF1KA1 LCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRL
850 860 870 880 890 900
590 600 610 620 630 640
pF1KA1 YGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLD
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS56 YGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLD
910 920 930 940 950 960
650 660 670 680 690 700
pF1KA1 DQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRH
::.:::::::::::::::::::::::::::::.::: :::::::::::::::::.::::.
CCDS56 DQMCDECQGARCGGKFAPFFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADRPRQ
970 980 990 1000 1010 1020
710
pF1KA1 ISFRWN
: ::::
CCDS56 IHFRWN
1030
>>CCDS53553.1 CPEB3 gene_id:22849|Hs108|chr10 (684 aa)
initn: 2343 init1: 1847 opt: 1981 Z-score: 1297.4 bits: 250.5 E(32554): 6.1e-66
Smith-Waterman score: 2596; 60.5% identity (74.9% similar) in 701 aa overlap (70-712:1-684)
40 50 60 70 80 90
pF1KA1 SPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSP-
.::..: .:.:.: : ::. ..:: .:
CCDS53 MQDDLL-MDKSKTQPQPQQQQRQQQQPQPE
10 20
100 110 120 130 140 150
pF1KA1 SPGQEAGILP-ETEKAKSEENQG------DNSSENGNGKEKIRIESPVLTGFDYQEATGL
: .:: : .: : :::.. . :: .:...:::.: :.....
CCDS53 SSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFHQPPQQ
30 40 50 60 70 80
160 170 180 190 200
pF1KA1 GTSTQ-PLTSSASSLTGF-SNWSAAIAPSSSTIINEDASFFHQGGVPAASANNGALLFQN
: : . .:: .: :.:: ...: :: ::: :: .:. ::..::::
CCDS53 PPPPQEPAAPGASLSPSFGSTWS-----TGTTNAVED-SFF-QGITPV----NGTMLFQN
90 100 110 120 130
210 220 230 240 250
pF1KA1 FPHHVSPGFGGSFSPQIG-PLSQHHPHHPH----------FQHHHSQHQQQRRSPASPHP
:::::.: :::.:::::: .::: . : : ..: :::::::::
CCDS53 FPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQ
140 150 160 170 180 190
260 270 280 290 300
pF1KA1 PPFTHRNAAFNQLPHLANNLNKPPSP----WSSYQSPSPTPSSSWSPG-------GGGYG
:...:.:: : .:: : .. . . . ::::. .. .
CCDS53 APYAQRSAA-AAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSN
200 210 220 230 240 250
310 320 330 340 350
pF1KA1 GWGGSQ-GRDHRRGLNGGI-------TPLNSISPLKKNFASNHIQLQKYARPSSAFAPKS
::: : ::: ::... :. .::: :::::: :.:: : :. : .. .. ::
CCDS53 PWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPR-AAPLTSKS
260 270 280 290 300 310
360 370 380 390 400
pF1KA1 WMEDSLNRADN---IFPFPDRPR---TFDMHSLESSLIDIMRAENDTIKARTY------G
::::. :.:: ..:: :: : ::..::::.::.:..:.... .:.: :
CCDS53 WMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPLKGRMGINFHHPG
320 330 340 350 360 370
410 420 430 440 450 460
pF1KA1 RRR-----GQSSLFPMEDGFLDDGRGDQPLHSGLGSP-HCFSHQNGERVERYSRKVFVGG
..:::::.::.::::..::: : :::.:: .: :::::::::::::::::
CCDS53 TDNIMALNSRSSLFPFEDAFLDDSHGDQALSSGLSSPTRC---QNGERVERYSRKVFVGG
380 390 400 410 420 430
470 480 490 500 510 520
pF1KA1 LPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEE
::::::::::::::::::::.::::::::::::::::::::::::.:::::::::::.::
CCDS53 LPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEE
440 450 460 470 480 490
530 540 550 560 570 580
pF1KA1 DGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAM
500 510 520 530 540 550
590 600 610 620 630 640
pF1KA1 IMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVK
::::::::::::::::::::::::::::::::::::::::::::::::::..::::::::
CCDS53 IMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVK
560 570 580 590 600 610
650 660 670 680 690 700
pF1KA1 PYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGG
:::::::.::::::.::::::::::::::::::::::::::.::::::::::::::::::
CCDS53 PYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGG
620 630 640 650 660 670
710
pF1KA1 DRPRHISFRWN
:::::. :::.
CCDS53 DRPRHVPFRWS
680
>>CCDS31246.1 CPEB3 gene_id:22849|Hs108|chr10 (698 aa)
initn: 2321 init1: 1847 opt: 1965 Z-score: 1286.9 bits: 248.6 E(32554): 2.3e-65
Smith-Waterman score: 2548; 58.6% identity (73.6% similar) in 715 aa overlap (70-712:1-698)
40 50 60 70 80 90
pF1KA1 SPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSP-
.::..: .:.:.: : ::. ..:: .:
CCDS31 MQDDLL-MDKSKTQPQPQQQQRQQQQPQPE
10 20
100 110 120 130 140 150
pF1KA1 SPGQEAGILP-ETEKAKSEENQG------DNSSENGNGKEKIRIESPVLTGFDYQEATGL
: .:: : .: : :::.. . :: .:...:::.: :.....
CCDS31 SSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFHQPPQQ
30 40 50 60 70 80
160 170 180 190 200
pF1KA1 GTSTQ-PLTSSASSLTGF-SNWSAAIAPSSSTIINEDASFFHQGGVPAASANNGALLFQN
: : . .:: .: :.:: ...: :: ::: :: .:. ::..::::
CCDS31 PPPPQEPAAPGASLSPSFGSTWS-----TGTTNAVED-SFF-QGITPV----NGTMLFQN
90 100 110 120 130
210 220 230 240 250
pF1KA1 FPHHVSPGFGGSFSPQIG-PLSQHHPHHPH----------FQHHHSQHQQQRRSPASPHP
:::::.: :::.:::::: .::: . : : ..: :::::::::
CCDS31 FPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQ
140 150 160 170 180 190
260 270 280 290 300
pF1KA1 PPFTHRNAAFNQLPHLANNLNKPPSP----WSSYQSPSPTPSSSWSPG-------GGGYG
:...:.:: : .:: : .. . . . ::::. .. .
CCDS31 APYAQRSAA-AAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSN
200 210 220 230 240 250
310 320 330 340 350
pF1KA1 GWGGSQ-GRDHRRGLNGGI-------TPLNSISPLKKNFASNHIQLQKYARPSSAFAPKS
::: : ::: ::... :. .::: :::::: :.:: : :. : .. .. ::
CCDS31 PWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPR-AAPLTSKS
260 270 280 290 300 310
360 370 380 390 400
pF1KA1 WMEDSLNRADN---IFPFPDRPR---TFDMHSLESSLIDIMRAENDTIKARTY-------
::::. :.:: ..:: :: : ::..::::.::.:..:.... .:.. :
CCDS31 WMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPLKGKHYPPSGPPM
320 330 340 350 360 370
410 420 430 440
pF1KA1 ------------GR------RRGQSSLFPMEDGFLDDGRGDQPLHSGLGSP-HCFSHQNG
:: . : .... ....::::..::: : :::.:: .: :::
CCDS31 SFADIMWRNHFAGRMGINFHHPGTDNIMALNNAFLDDSHGDQALSSGLSSPTRC---QNG
380 390 400 410 420 430
450 460 470 480 490 500
pF1KA1 ERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQD
::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::.
CCDS31 ERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQE
440 450 460 470 480 490
510 520 530 540 550 560
pF1KA1 ESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFV
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFV
500 510 520 530 540 550
570 580 590 600 610 620
pF1KA1 GGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFV
560 570 580 590 600 610
630 640 650 660 670 680
pF1KA1 QLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSR
::::..:::::::::::::::.::::::.::::::::::::::::::::::::::.::::
CCDS31 QLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSR
620 630 640 650 660 670
690 700 710
pF1KA1 AGREFHKPLVKEGGDRPRHISFRWN
:::::::::::::::::::. :::.
CCDS31 AGREFHKPLVKEGGDRPRHVPFRWS
680 690
>>CCDS45330.2 CPEB1 gene_id:64506|Hs108|chr15 (486 aa)
initn: 773 init1: 238 opt: 742 Z-score: 497.6 bits: 102.1 E(32554): 2.1e-21
Smith-Waterman score: 742; 44.7% identity (70.8% similar) in 257 aa overlap (453-703:234-483)
430 440 450 460 470 480
pF1KA1 LDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLI
:: :::.::.: :: : .. .:: :: :
CCDS45 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS
210 220 230 240 250 260
490 500 510 520 530
pF1KA1 VDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDAC----IEEDG--KLYLCVSSPTIKD
:.:: : .. :::::..:.:. :.::..:..:: . :: . :. .:: ..
CCDS45 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC
270 280 290 300 310 320
540 550 560 570 580 590
pF1KA1 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID
: ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: :::::
CCDS45 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID
330 340 350 360 370 380
600 610 620 630 640 650
pF1KA1 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGA
:: . ::: :.:::.:.::.::. :.:: ::... .. :.:.. :: :.:.:: :..
CCDS45 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS-
390 400 410 420 430 440
660 670 680 690 700 710
pF1KA1 RCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
. .:::: . .:..:.:. :: :: : . :.::... .:
CCDS45 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
450 460 470 480
712 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 21:38:50 2016 done: Wed Nov 2 21:38:51 2016
Total Scan time: 3.920 Total Display time: 0.240
Function used was FASTA [36.3.4 Apr, 2011]