Result of FASTA (omim) for
pF1KA1673
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1673, 712 aa
1>>>pF1KA1673 712 - 712 aa - 712 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.0865+/-0.000373; mu= 4.4853+/- 0.023
mean_var=262.5836+/-54.411, 0's: 0 Z-trim(121.5): 44 B-trim: 0 in 0/56
Lambda= 0.079148
statistics sampled from 38055 (38101) to 38055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.447), width: 16
Scan time: 11.890
The best scores are: opt bits E(85289)
NP_001295118 (OMIM: 610607) cytoplasmic polyadenyl ( 712) 5006 585.2 2.9e-166
NP_001295120 (OMIM: 610607) cytoplasmic polyadenyl ( 704) 4926 576.1 1.6e-163
XP_011532962 (OMIM: 610607) PREDICTED: cytoplasmic ( 439) 2816 335.0 3.9e-91
XP_011532963 (OMIM: 610607) PREDICTED: cytoplasmic ( 422) 2811 334.4 5.6e-91
XP_005266051 (OMIM: 610607) PREDICTED: cytoplasmic ( 721) 2815 335.1 6e-91
NP_085130 (OMIM: 610607) cytoplasmic polyadenylati ( 729) 2815 335.1 6e-91
XP_011537819 (OMIM: 610606) PREDICTED: cytoplasmic ( 665) 2253 270.9 1.2e-71
NP_001295122 (OMIM: 610607) cytoplasmic polyadenyl ( 322) 2245 269.6 1.3e-71
NP_001295121 (OMIM: 610607) cytoplasmic polyadenyl ( 339) 2149 258.7 2.7e-68
NP_872587 (OMIM: 610605) cytoplasmic polyadenylati ( 996) 2104 254.0 2.1e-66
XP_011512079 (OMIM: 610605) PREDICTED: cytoplasmic (1029) 2092 252.6 5.5e-66
NP_872291 (OMIM: 610605) cytoplasmic polyadenylati (1026) 2075 250.7 2.1e-65
NP_001170855 (OMIM: 610605) cytoplasmic polyadenyl ( 999) 2063 249.3 5.4e-65
NP_001170852 (OMIM: 610605) cytoplasmic polyadenyl (1007) 2052 248.1 1.3e-64
NP_001170853 (OMIM: 610605) cytoplasmic polyadenyl (1034) 2051 248.0 1.4e-64
NP_001170854 (OMIM: 610605) cytoplasmic polyadenyl (1004) 2043 247.0 2.6e-64
XP_011537817 (OMIM: 610606) PREDICTED: cytoplasmic ( 692) 2036 246.1 3.5e-64
XP_005248192 (OMIM: 610605) PREDICTED: cytoplasmic (1037) 2033 245.9 5.9e-64
XP_006717777 (OMIM: 610606) PREDICTED: cytoplasmic ( 715) 2024 244.7 9.2e-64
XP_006717778 (OMIM: 610606) PREDICTED: cytoplasmic ( 715) 2024 244.7 9.2e-64
XP_016863222 (OMIM: 610605) PREDICTED: cytoplasmic ( 463) 2019 244.0 1e-63
XP_016863223 (OMIM: 610605) PREDICTED: cytoplasmic ( 463) 2019 244.0 1e-63
XP_016871416 (OMIM: 610606) PREDICTED: cytoplasmic ( 314) 1977 239.0 2.1e-62
XP_005269687 (OMIM: 610606) PREDICTED: cytoplasmic ( 684) 1981 239.8 2.7e-62
NP_001171608 (OMIM: 610606) cytoplasmic polyadenyl ( 684) 1981 239.8 2.7e-62
XP_011537816 (OMIM: 610606) PREDICTED: cytoplasmic ( 707) 1979 239.6 3.2e-62
NP_055727 (OMIM: 610606) cytoplasmic polyadenylati ( 698) 1965 238.0 9.7e-62
XP_011537821 (OMIM: 610606) PREDICTED: cytoplasmic ( 621) 1502 185.1 7.3e-46
XP_011537820 (OMIM: 610606) PREDICTED: cytoplasmic ( 640) 1474 181.9 6.9e-45
XP_011537822 (OMIM: 610606) PREDICTED: cytoplasmic ( 598) 1462 180.5 1.7e-44
NP_001275749 (OMIM: 607342) cytoplasmic polyadenyl ( 335) 742 98.0 6.2e-20
NP_001275748 (OMIM: 607342) cytoplasmic polyadenyl ( 486) 742 98.2 8.2e-20
NP_001073003 (OMIM: 607342) cytoplasmic polyadenyl ( 486) 742 98.2 8.2e-20
NP_001073002 (OMIM: 607342) cytoplasmic polyadenyl ( 486) 742 98.2 8.2e-20
NP_085097 (OMIM: 607342) cytoplasmic polyadenylati ( 561) 742 98.2 9e-20
NP_001073001 (OMIM: 607342) cytoplasmic polyadenyl ( 491) 608 82.9 3.3e-15
XP_011512081 (OMIM: 610605) PREDICTED: cytoplasmic ( 666) 327 50.9 1.9e-05
XP_011512080 (OMIM: 610605) PREDICTED: cytoplasmic ( 726) 327 51.0 2e-05
XP_011537825 (OMIM: 610606) PREDICTED: cytoplasmic ( 395) 297 47.3 0.00014
XP_011537824 (OMIM: 610606) PREDICTED: cytoplasmic ( 418) 290 46.5 0.00025
>>NP_001295118 (OMIM: 610607) cytoplasmic polyadenylatio (712 aa)
initn: 5006 init1: 5006 opt: 5006 Z-score: 3106.0 bits: 585.2 E(85289): 2.9e-166
Smith-Waterman score: 5006; 100.0% identity (100.0% similar) in 712 aa overlap (1-712:1-712)
10 20 30 40 50 60
pF1KA1 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKARTYGRRRGQSSLFPMED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKARTYGRRRGQSSLFPMED
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 GFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 IRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 LKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGG
610 620 630 640 650 660
670 680 690 700 710
pF1KA1 KFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
670 680 690 700 710
>>NP_001295120 (OMIM: 610607) cytoplasmic polyadenylatio (704 aa)
initn: 2900 init1: 2806 opt: 4926 Z-score: 3056.7 bits: 576.1 E(85289): 1.6e-163
Smith-Waterman score: 4926; 98.9% identity (98.9% similar) in 712 aa overlap (1-712:1-704)
10 20 30 40 50 60
pF1KA1 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKARTYGRRRGQSSLFPMED
:::::::::::::::::::::::::::::::::::::::::: ::::::::::
NP_001 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIK--------GQSSLFPMED
370 380 390 400 410
430 440 450 460 470 480
pF1KA1 GFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGP
420 430 440 450 460 470
490 500 510 520 530 540
pF1KA1 LIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQ
480 490 500 510 520 530
550 560 570 580 590 600
pF1KA1 IRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPE
540 550 560 570 580 590
610 620 630 640 650 660
pF1KA1 LKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGG
600 610 620 630 640 650
670 680 690 700 710
pF1KA1 KFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
660 670 680 690 700
>>XP_011532962 (OMIM: 610607) PREDICTED: cytoplasmic pol (439 aa)
initn: 2904 init1: 2810 opt: 2816 Z-score: 1757.2 bits: 335.0 E(85289): 3.9e-91
Smith-Waterman score: 2816; 96.7% identity (98.1% similar) in 420 aa overlap (1-420:1-420)
10 20 30 40 50 60
pF1KA1 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKARTYGRRRGQSSLFPMED
::::::::::::::::::::::::::::::::::::::::::.: :..: . ..:
XP_011 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKGRLNYSYPGSDSSLLIND
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 GFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGP
XP_011 IYQEMKNIVTVFPFSKAGR
430
>>XP_011532963 (OMIM: 610607) PREDICTED: cytoplasmic pol (422 aa)
initn: 2803 init1: 2803 opt: 2811 Z-score: 1754.3 bits: 334.4 E(85289): 5.6e-91
Smith-Waterman score: 2811; 97.1% identity (98.3% similar) in 417 aa overlap (1-417:1-416)
10 20 30 40 50 60
pF1KA1 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKARTYGRRRGQSSLFPMED
:::::::::::::::::::::::::::::::::::::::::: : . .. ..::
XP_011 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKD-IYQEMKNIVTVFPFSK
370 380 390 400 410
430 440 450 460 470 480
pF1KA1 GFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGP
XP_011 AGR
420
>>XP_005266051 (OMIM: 610607) PREDICTED: cytoplasmic pol (721 aa)
initn: 5039 init1: 2810 opt: 2815 Z-score: 1753.8 bits: 335.1 E(85289): 6e-91
Smith-Waterman score: 4925; 98.1% identity (98.3% similar) in 721 aa overlap (1-712:1-721)
10 20 30 40 50 60
pF1KA1 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
310 320 330 340 350 360
370 380 390 400 410
pF1KA1 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKAR---TY-GRRR-----G
::::::::::::::::::::::::::::::::::::::::::.: .: : :
XP_005 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKGRLNYSYPGSDSSLLING
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA1 QSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEI
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA1 TASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSS
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA1 PTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVC
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA1 YAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCD
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA1 ECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRW
670 680 690 700 710 720
pF1KA1 N
:
XP_005 N
>>NP_085130 (OMIM: 610607) cytoplasmic polyadenylation e (729 aa)
initn: 2812 init1: 2812 opt: 2815 Z-score: 1753.7 bits: 335.1 E(85289): 6e-91
Smith-Waterman score: 4962; 97.7% identity (97.7% similar) in 729 aa overlap (1-712:1-729)
10 20 30 40 50 60
pF1KA1 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
310 320 330 340 350 360
370 380 390 400
pF1KA1 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIK-----------------A
:::::::::::::::::::::::::::::::::::::::::: :
NP_085 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKGRLNYSYPGSDSSLLINA
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA1 RTYGRRRGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 RTYGRRRGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLP
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA1 PDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 PDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDG
490 500 510 520 530 540
530 540 550 560 570 580
pF1KA1 KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIM
550 560 570 580 590 600
590 600 610 620 630 640
pF1KA1 DRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 DRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPY
610 620 630 640 650 660
650 660 670 680 690 700
pF1KA1 VLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 VLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDR
670 680 690 700 710 720
710
pF1KA1 PRHISFRWN
:::::::::
NP_085 PRHISFRWN
>>XP_011537819 (OMIM: 610606) PREDICTED: cytoplasmic pol (665 aa)
initn: 2273 init1: 1847 opt: 2253 Z-score: 1407.4 bits: 270.9 E(85289): 1.2e-71
Smith-Waterman score: 2613; 61.3% identity (75.7% similar) in 690 aa overlap (70-712:1-665)
40 50 60 70 80 90
pF1KA1 SPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSP-
.::..: .:.:.: : ::. ..:: .:
XP_011 MQDDLL-MDKSKTQPQPQQQQRQQQQPQPE
10 20
100 110 120 130 140 150
pF1KA1 SPGQEAGILP-ETEKAKSEENQG------DNSSENGNGKEKIRIESPVLTGFDYQEATGL
: .:: : .: : :::.. . :: .:...:::.: :.....
XP_011 SSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFHQPPQQ
30 40 50 60 70 80
160 170 180 190 200
pF1KA1 GTSTQ-PLTSSASSLTGF-SNWSAAIAPSSSTIINEDASFFHQGGVPAASANNGALLFQN
: : . .:: .: :.:: ...: :: ::: :: .:. ::..::::
XP_011 PPPPQEPAAPGASLSPSFGSTWS-----TGTTNAVED-SFF-QGITPV----NGTMLFQN
90 100 110 120 130
210 220 230 240 250
pF1KA1 FPHHVSPGFGGSFSPQIG-PLSQHHPHHPH----------FQHHHSQHQQQRRSPASPHP
:::::.: :::.:::::: .::: . : : ..: :::::::::
XP_011 FPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQ
140 150 160 170 180 190
260 270 280 290 300
pF1KA1 PPFTHRNAAFNQLPHLANNLNKPPSP----WSSYQSPSPTPSSSWSPG-------GGGYG
:...:.:: : .:: : .. . . . ::::. .. .
XP_011 APYAQRSAA-AAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSN
200 210 220 230 240 250
310 320 330 340 350
pF1KA1 GWGGSQ-GRDHRRGLNGGI-------TPLNSISPLKKNFASNHIQLQKYARPSSAFAPKS
::: : ::: ::... :. .::: :::::: :.:: : :. : .. .. ::
XP_011 PWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPR-AAPLTSKS
260 270 280 290 300 310
360 370 380 390 400 410
pF1KA1 WMEDSLNRADN---IFPFPDRPR---TFDMHSLESSLIDIMRAENDTIKARTYGRRRGQS
::::. :.:: ..:: :: : ::..::::.::.:..:.... .: :.:
XP_011 WMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPLK--------GRS
320 330 340 350 360
420 430 440 450 460 470
pF1KA1 SLFPMEDGFLDDGRGDQPLHSGLGSP-HCFSHQNGERVERYSRKVFVGGLPPDIDEDEIT
::::.::.::::..::: : :::.:: .: ::::::::::::::::::::::::::::
XP_011 SLFPFEDAFLDDSHGDQALSSGLSSPTRC---QNGERVERYSRKVFVGGLPPDIDEDEIT
370 380 390 400 410 420
480 490 500 510 520 530
pF1KA1 ASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSP
:::::::::.::::::::::::::::::::::::.:::::::::::.:::::::::::::
XP_011 ASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSP
430 440 450 460 470 480
540 550 560 570 580 590
pF1KA1 TIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCY
490 500 510 520 530 540
600 610 620 630 640 650
pF1KA1 AGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDE
:::::::::::::::::::::::::::::::::::::::..:::::::::::::::.:::
XP_011 AGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDE
550 560 570 580 590 600
660 670 680 690 700 710
pF1KA1 CQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
:::.::::::::::::::::::::::::::.:::::::::::::::::::::::. :::.
XP_011 CQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS
610 620 630 640 650 660
>>NP_001295122 (OMIM: 610607) cytoplasmic polyadenylatio (322 aa)
initn: 2152 init1: 2152 opt: 2245 Z-score: 1406.6 bits: 269.6 E(85289): 1.3e-71
Smith-Waterman score: 2245; 97.6% identity (97.6% similar) in 330 aa overlap (383-712:1-322)
360 370 380 390 400 410
pF1KA1 SAFAPKSWMEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKARTYGRRRGQ
:::::::::::::::::::: ::
NP_001 MHSLESSLIDIMRAENDTIK--------GQ
10 20
420 430 440 450 460 470
pF1KA1 SSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEIT
30 40 50 60 70 80
480 490 500 510 520 530
pF1KA1 ASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSP
90 100 110 120 130 140
540 550 560 570 580 590
pF1KA1 TIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCY
150 160 170 180 190 200
600 610 620 630 640 650
pF1KA1 AGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDE
210 220 230 240 250 260
660 670 680 690 700 710
pF1KA1 CQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
270 280 290 300 310 320
>>NP_001295121 (OMIM: 610607) cytoplasmic polyadenylatio (339 aa)
initn: 2264 init1: 2149 opt: 2149 Z-score: 1347.0 bits: 258.7 E(85289): 2.7e-68
Smith-Waterman score: 2244; 95.9% identity (96.5% similar) in 339 aa overlap (383-712:1-339)
360 370 380 390 400
pF1KA1 SAFAPKSWMEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKAR---TY-GR
::::::::::::::::::::.: .: :
NP_001 MHSLESSLIDIMRAENDTIKGRLNYSYPGS
10 20 30
410 420 430 440 450 460
pF1KA1 RR-----GQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLP
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSSLLINGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLP
40 50 60 70 80 90
470 480 490 500 510 520
pF1KA1 PDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDG
100 110 120 130 140 150
530 540 550 560 570 580
pF1KA1 KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIM
160 170 180 190 200 210
590 600 610 620 630 640
pF1KA1 DRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPY
220 230 240 250 260 270
650 660 670 680 690 700
pF1KA1 VLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDR
280 290 300 310 320 330
710
pF1KA1 PRHISFRWN
:::::::::
NP_001 PRHISFRWN
>>NP_872587 (OMIM: 610605) cytoplasmic polyadenylation e (996 aa)
initn: 2257 init1: 1853 opt: 2104 Z-score: 1313.2 bits: 254.0 E(85289): 2.1e-66
Smith-Waterman score: 2401; 64.7% identity (77.1% similar) in 598 aa overlap (156-712:418-996)
130 140 150 160 170 180
pF1KA1 NGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSSTIINE
:: :::.. : :. : . : : .
NP_872 ASPPPQPQQPPPTQPQQQPPPPQQPPQPQPQPPGSSATTPGGGSGGSLSAMPPPSP--DS
390 400 410 420 430 440
190 200 210 220
pF1KA1 DASFFHQGGVPAASANNGALLFQNF----PHHVS----P-------GFGGSFS----PQI
. .:. :.: :. : :. : .: :: . : :::: :: :
NP_872 ENGFY--PGLP--SSMNPAF-FPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPP
450 460 470 480 490 500
230 240 250 260 270 280
pF1KA1 GPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLAN-NLNKP---P
: ... :.. :. :.::::.::. :. :: : . . : ..:
NP_872 PPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQ-QHQAAAAAFLQQRNSYNHHQPLLKQ
510 520 530 540 550
290 300 310 320 330 340
pF1KA1 SPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGIT-PLNSISPLKKNFASN
::::..:: :.: : : .::. .:::::: : :: .:.:::::: :..:
NP_872 SPWSNHQS------SGW---GTGSMSWGAMHGRDHRRTGNMGIPGTMNQISPLKKPFSGN
560 570 580 590 600 610
350 360 370 380 390
pF1KA1 HIQLQKYARPSSAFAPKSWMEDSLNRADN----IFPFPDRPRTFD---MHSLESSLIDIM
: :..: . ...::::.::.. :.:: ..:. :: : .: :::::.::::::
NP_872 VIAPPKFTRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQDRSRMYDSLNMHSLENSLIDIM
620 630 640 650 660 670
400 410 420 430 440
pF1KA1 RAENDTIKAR-TY---GRRR-----GQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFS-H
:::.: .:.: .: : :.:::::..::.::::..:: . :.:: :.: :
NP_872 RAEHDPLKGRLSYPHPGTDNLLMLNGRSSLFPIDDGLLDDGHSDQV--GVLNSPTCYSAH
680 690 700 710 720
450 460 470 480 490 500
pF1KA1 QNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLL
:::::.::.::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_872 QNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLL
730 740 750 760 770 780
510 520 530 540 550 560
pF1KA1 FQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKT
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 FQEESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKT
790 800 810 820 830 840
570 580 590 600 610 620
pF1KA1 IFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 IFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISA
850 860 870 880 890 900
630 640 650 660 670 680
pF1KA1 RFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAI
::::::::.:::::::::::::::.:::::::::::::::::::::::::::::.::: :
NP_872 RFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGKFAPFFCANVTCLQYYCEFCWANI
910 920 930 940 950 960
690 700 710
pF1KA1 HSRAGREFHKPLVKEGGDRPRHISFRWN
::::::::::::::::.::::.: ::::
NP_872 HSRAGREFHKPLVKEGADRPRQIHFRWN
970 980 990
712 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 21:38:51 2016 done: Wed Nov 2 21:38:53 2016
Total Scan time: 11.890 Total Display time: 0.140
Function used was FASTA [36.3.4 Apr, 2011]