Result of FASTA (ccds) for
pF1KA1680
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1680, 900 aa
1>>>pF1KA1680 900 - 900 aa - 900 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1224+/-0.000978; mu= 7.7201+/- 0.059
mean_var=127.7667+/-25.684, 0's: 0 Z-trim(107.6): 16 B-trim: 10 in 1/52
Lambda= 0.113466
statistics sampled from 9697 (9708) to 9697 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.298), width: 16
Scan time: 4.470
The best scores are: opt bits E(32554)
CCDS47099.1 CCSER1 gene_id:401145|Hs108|chr4 ( 900) 5828 965.9 0
CCDS47100.1 CCSER1 gene_id:401145|Hs108|chr4 ( 677) 4334 721.3 1.4e-207
>>CCDS47099.1 CCSER1 gene_id:401145|Hs108|chr4 (900 aa)
initn: 5828 init1: 5828 opt: 5828 Z-score: 5159.7 bits: 965.9 E(32554): 0
Smith-Waterman score: 5828; 100.0% identity (100.0% similar) in 900 aa overlap (1-900:1-900)
10 20 30 40 50 60
pF1KA1 MGDSGSRRSTLVSRLPIFRRSINRRHDSLPSSPSSSNTVGVHSSSPSSTNSSSGSTGKRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGDSGSRRSTLVSRLPIFRRSINRRHDSLPSSPSSSNTVGVHSSSPSSTNSSSGSTGKRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SIFRTPSISFHHKKGSEPKQEPTNQNLSISNGAQPGHSNMQKLSLEEHIKTRGRHSVGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SIFRTPSISFHHKKGSEPKQEPTNQNLSISNGAQPGHSNMQKLSLEEHIKTRGRHSVGFS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 SSRNKKITRSLTEDFEREKEHSTNKNVFINCLSSGKSEGDDSGFTEDQTRRSVKQSTRKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SSRNKKITRSLTEDFEREKEHSTNKNVFINCLSSGKSEGDDSGFTEDQTRRSVKQSTRKL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 LPKSFSSHYKFSKPVLQSQSISLVQQSEFSLEVTQYQEREPVLVRASPSCSVDVTERAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LPKSFSSHYKFSKPVLQSQSISLVQQSEFSLEVTQYQEREPVLVRASPSCSVDVTERAGS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 SLQSPLLSADLTTAQTPSEFLALTEDSVSEMDAFSKSGSMASHCDNFGHNDSTSQMSLNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SLQSPLLSADLTTAQTPSEFLALTEDSVSEMDAFSKSGSMASHCDNFGHNDSTSQMSLNS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 AAVTKTTTELTGTVPCAIMSPGKYRLEGQCSTESNSLPETSAANQKEVLLQIAELPATSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AAVTKTTTELTGTVPCAIMSPGKYRLEGQCSTESNSLPETSAANQKEVLLQIAELPATSV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 SHSESNLPADSEREENIGLQNGETMLGTNSPRKLGFYEQHKAIAEHVKGIHPISDSKIIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SHSESNLPADSEREENIGLQNGETMLGTNSPRKLGFYEQHKAIAEHVKGIHPISDSKIIP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 TSGDHHIFNKTSHGYEANPAKVLASSLSPFREGRFIERRLRSSSEGTAGSSRMILKPKDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TSGDHHIFNKTSHGYEANPAKVLASSLSPFREGRFIERRLRSSSEGTAGSSRMILKPKDG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 NIEEVNSLRKQRAGSSSSKMNSLDVLNNLGSCELDEDDLMLDLEFLEEQSLHPSVCREDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NIEEVNSLRKQRAGSSSSKMNSLDVLNNLGSCELDEDDLMLDLEFLEEQSLHPSVCREDS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 YHSVVSCAAVVLTPMEPMIEMKKREEPEFPEPSKQNLSLKLTKDVDQEARCSHISRMPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YHSVVSCAAVVLTPMEPMIEMKKREEPEFPEPSKQNLSLKLTKDVDQEARCSHISRMPNS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 PSADWPLQGVEENGGIDSLPFRLMLQDCTAVKTLLLKMKRVLQESADMSPASSTTSLPVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PSADWPLQGVEENGGIDSLPFRLMLQDCTAVKTLLLKMKRVLQESADMSPASSTTSLPVS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 PLTEEPVPFKDIMKDECSMLKLQLKEKDELISQLQEELGKVRHLQKAFASRVDKSTQTEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PLTEEPVPFKDIMKDECSMLKLQLKEKDELISQLQEELGKVRHLQKAFASRVDKSTQTEL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 LCYDGLNLKRLETVQGGREATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LCYDGLNLKRLETVQGGREATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 KTCQLPSLCLSNFLKDKELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KTCQLPSLCLSNFLKDKELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 TFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNLHSTELQTLGQQDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNLHSTELQTLGQQDG
850 860 870 880 890 900
>>CCDS47100.1 CCSER1 gene_id:401145|Hs108|chr4 (677 aa)
initn: 4333 init1: 4333 opt: 4334 Z-score: 3840.0 bits: 721.3 E(32554): 1.4e-207
Smith-Waterman score: 4334; 99.3% identity (99.4% similar) in 676 aa overlap (1-676:1-676)
10 20 30 40 50 60
pF1KA1 MGDSGSRRSTLVSRLPIFRRSINRRHDSLPSSPSSSNTVGVHSSSPSSTNSSSGSTGKRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGDSGSRRSTLVSRLPIFRRSINRRHDSLPSSPSSSNTVGVHSSSPSSTNSSSGSTGKRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SIFRTPSISFHHKKGSEPKQEPTNQNLSISNGAQPGHSNMQKLSLEEHIKTRGRHSVGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SIFRTPSISFHHKKGSEPKQEPTNQNLSISNGAQPGHSNMQKLSLEEHIKTRGRHSVGFS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 SSRNKKITRSLTEDFEREKEHSTNKNVFINCLSSGKSEGDDSGFTEDQTRRSVKQSTRKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SSRNKKITRSLTEDFEREKEHSTNKNVFINCLSSGKSEGDDSGFTEDQTRRSVKQSTRKL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 LPKSFSSHYKFSKPVLQSQSISLVQQSEFSLEVTQYQEREPVLVRASPSCSVDVTERAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LPKSFSSHYKFSKPVLQSQSISLVQQSEFSLEVTQYQEREPVLVRASPSCSVDVTERAGS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 SLQSPLLSADLTTAQTPSEFLALTEDSVSEMDAFSKSGSMASHCDNFGHNDSTSQMSLNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SLQSPLLSADLTTAQTPSEFLALTEDSVSEMDAFSKSGSMASHCDNFGHNDSTSQMSLNS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 AAVTKTTTELTGTVPCAIMSPGKYRLEGQCSTESNSLPETSAANQKEVLLQIAELPATSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AAVTKTTTELTGTVPCAIMSPGKYRLEGQCSTESNSLPETSAANQKEVLLQIAELPATSV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 SHSESNLPADSEREENIGLQNGETMLGTNSPRKLGFYEQHKAIAEHVKGIHPISDSKIIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SHSESNLPADSEREENIGLQNGETMLGTNSPRKLGFYEQHKAIAEHVKGIHPISDSKIIP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 TSGDHHIFNKTSHGYEANPAKVLASSLSPFREGRFIERRLRSSSEGTAGSSRMILKPKDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TSGDHHIFNKTSHGYEANPAKVLASSLSPFREGRFIERRLRSSSEGTAGSSRMILKPKDG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 NIEEVNSLRKQRAGSSSSKMNSLDVLNNLGSCELDEDDLMLDLEFLEEQSLHPSVCREDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NIEEVNSLRKQRAGSSSSKMNSLDVLNNLGSCELDEDDLMLDLEFLEEQSLHPSVCREDS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 YHSVVSCAAVVLTPMEPMIEMKKREEPEFPEPSKQNLSLKLTKDVDQEARCSHISRMPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YHSVVSCAAVVLTPMEPMIEMKKREEPEFPEPSKQNLSLKLTKDVDQEARCSHISRMPNS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 PSADWPLQGVEENGGIDSLPFRLMLQDCTAVKTLLLKMKRVLQESADMSPASSTTSLPVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PSADWPLQGVEENGGIDSLPFRLMLQDCTAVKTLLLKMKRVLQESADMSPASSTTSLPVS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 PLTEEPVPFKDIMKDECSMLKLQLKEKDELISQLQEELGKVRHLQKAFASRVDKSTQTEL
:::::::::: . :
CCDS47 PLTEEPVPFKTTYPREF
670
900 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:43:24 2016 done: Fri Nov 4 01:43:24 2016
Total Scan time: 4.470 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]