Result of FASTA (ccds) for
pF1KA1692
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1692, 833 aa
1>>>pF1KA1692 833 - 833 aa - 833 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1412+/-0.00116; mu= 16.4501+/- 0.070
mean_var=79.5681+/-16.233, 0's: 0 Z-trim(102.0): 47 B-trim: 0 in 0/50
Lambda= 0.143782
statistics sampled from 6722 (6755) to 6722 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.561), E-opt: 0.2 (0.208), width: 16
Scan time: 2.520
The best scores are: opt bits E(32554)
CCDS3179.1 VEPH1 gene_id:79674|Hs108|chr3 ( 833) 5433 1137.5 0
CCDS54662.1 VEPH1 gene_id:79674|Hs108|chr3 ( 788) 4054 851.5 0
CCDS54661.1 VEPH1 gene_id:79674|Hs108|chr3 ( 213) 1138 246.4 4e-65
CCDS54663.1 VEPH1 gene_id:79674|Hs108|chr3 ( 177) 1130 244.7 1.1e-64
>>CCDS3179.1 VEPH1 gene_id:79674|Hs108|chr3 (833 aa)
initn: 5433 init1: 5433 opt: 5433 Z-score: 6088.3 bits: 1137.5 E(32554): 0
Smith-Waterman score: 5433; 100.0% identity (100.0% similar) in 833 aa overlap (1-833:1-833)
10 20 30 40 50 60
pF1KA1 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 LIGHLKDSTHNDIILNILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LIGHLKDSTHNDIILNILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 DEERARSCLTYLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DEERARSCLTYLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 KLLTRQLENTKAGSGRRKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KLLTRQLENTKAGSGRRKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 NTPGSIRRYSLGQVSKEERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NTPGSIRRYSLGQVSKEERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 EIDPLGQGNDKLPFKTDTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EIDPLGQGNDKLPFKTDTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 IEYQDKLYLHLKKNLSKVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IEYQDKLYLHLKKNLSKVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 YSKSSFILISQEPQPWIQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YSKSSFILISQEPQPWIQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 MMESTFPQQKDLDQVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MMESTFPQQKDLDQVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 GKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRR
730 740 750 760 770 780
790 800 810 820 830
pF1KA1 DRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
790 800 810 820 830
>>CCDS54662.1 VEPH1 gene_id:79674|Hs108|chr3 (788 aa)
initn: 4037 init1: 4037 opt: 4054 Z-score: 4542.7 bits: 851.5 E(32554): 0
Smith-Waterman score: 5033; 94.6% identity (94.6% similar) in 833 aa overlap (1-833:1-788)
10 20 30 40 50 60
pF1KA1 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 LIGHLKDSTHNDIILNILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LIGHLKDSTHNDIILNILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 DEERARSCLTYLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DEERARSCLTYLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 KLLTRQLENTKAGSGRRKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KLLTRQLENTKAGSGRRKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 NTPGSIRRYSLGQVSKEERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NTPGSIRRYSLGQVSKEERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 EIDPLGQGNDKLPFKTDTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EIDPLGQGNDKLPFKTDTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 IEYQDKLYLHLKKNLSKVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IEYQDKLYLHLKKNLSKVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 YSKSSFILISQEPQPWIQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETA
:::::::::::::::::::::::::
CCDS54 YSKSSFILISQEPQPWIQIMFLFQQ-----------------------------------
610 620
670 680 690 700 710 720
pF1KA1 MMESTFPQQKDLDQVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIE
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ----------DLDQVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIE
630 640 650 660 670
730 740 750 760 770 780
pF1KA1 GKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRR
680 690 700 710 720 730
790 800 810 820 830
pF1KA1 DRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
740 750 760 770 780
>>CCDS54661.1 VEPH1 gene_id:79674|Hs108|chr3 (213 aa)
initn: 1138 init1: 1138 opt: 1138 Z-score: 1282.7 bits: 246.4 E(32554): 4e-65
Smith-Waterman score: 1138; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KA1 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGMVR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
CCDS54 KLSLGTCFGRYLKVFSSSIYGLWEARPRVLEAN
190 200 210
>>CCDS54663.1 VEPH1 gene_id:79674|Hs108|chr3 (177 aa)
initn: 1130 init1: 1130 opt: 1130 Z-score: 1275.0 bits: 244.7 E(32554): 1.1e-64
Smith-Waterman score: 1130; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)
10 20 30 40 50 60
pF1KA1 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQV
130 140 150 160 170
190 200 210 220 230 240
pF1KA1 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
833 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 21:51:58 2016 done: Wed Nov 2 21:51:59 2016
Total Scan time: 2.520 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]