Result of FASTA (ccds) for
pF1KA1738
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1738, 1127 aa
1>>>pF1KA1738 1127 - 1127 aa - 1127 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6702+/-0.000943; mu= 1.5771+/- 0.057
mean_var=207.8951+/-41.981, 0's: 0 Z-trim(112.3): 16 B-trim: 0 in 0/54
Lambda= 0.088951
statistics sampled from 13067 (13079) to 13067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.402), width: 16
Scan time: 5.800
The best scores are: opt bits E(32554)
CCDS74131.1 TEX2 gene_id:55852|Hs108|chr17 (1127) 7417 965.3 0
CCDS11658.1 TEX2 gene_id:55852|Hs108|chr17 (1134) 7393 962.2 0
>>CCDS74131.1 TEX2 gene_id:55852|Hs108|chr17 (1127 aa)
initn: 7417 init1: 7417 opt: 7417 Z-score: 5152.9 bits: 965.3 E(32554): 0
Smith-Waterman score: 7417; 100.0% identity (100.0% similar) in 1127 aa overlap (1-1127:1-1127)
10 20 30 40 50 60
pF1KA1 MTSLYGRHAEKTTDMPKPSAPKVHVQRSVSRDTIAIHFSASGEEEEEEEEEFREYFEEGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MTSLYGRHAEKTTDMPKPSAPKVHVQRSVSRDTIAIHFSASGEEEEEEEEEFREYFEEGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 DDQSIVTGLEAKEDLYLEPQVGHDPAGPAASPVLADGLSVSQAPAILPVSKNTVKLLESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DDQSIVTGLEAKEDLYLEPQVGHDPAGPAASPVLADGLSVSQAPAILPVSKNTVKLLESP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 VPAAQVLSTVPLAVSPGSSSSGPLASSPSVSSLSEQKTSSSSPLSSPSKSPILSSSASTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VPAAQVLSTVPLAVSPGSSSSGPLASSPSVSSLSEQKTSSSSPLSSPSKSPILSSSASTS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TLSSAKPFMSLVKSLSTEVEPKESPHPARHRHLMKTLVKSLSTDTSRQESDTVSYKPPDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TLSSAKPFMSLVKSLSTEVEPKESPHPARHRHLMKTLVKSLSTDTSRQESDTVSYKPPDS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 KLNLHLFKQFTQPRNTGGDSKTAPSSPLTSPSDTRSFFKVPEMEAKIEDTKRRLSEVIYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KLNLHLFKQFTQPRNTGGDSKTAPSSPLTSPSDTRSFFKVPEMEAKIEDTKRRLSEVIYE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 PFQLLSKIIGEESGSHRPKALSSSASELSNLSSLNGHLESNNNYSIKEEECDSEGDGYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PFQLLSKIIGEESGSHRPKALSSSASELSNLSSLNGHLESNNNYSIKEEECDSEGDGYGS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 DSNIPRSDHPKSTGEPTREIELKSSQGSSLKDLGLKTSSLVLEKCSLSALVSKEDEEFCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DSNIPRSDHPKSTGEPTREIELKSSQGSSLKDLGLKTSSLVLEKCSLSALVSKEDEEFCE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 LYTEDFDLETEGESKVDKLSDIPLKPEVLAEDGVVLDSEDEVDSAVQHPELPVKTLGFFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LYTEDFDLETEGESKVDKLSDIPLKPEVLAEDGVVLDSEDEVDSAVQHPELPVKTLGFFI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 MCVYVYLILPLPHYVSGLFLGIGLGFMTAVCVIWFFTPPSAHKYHKLHKNLRHWNTRSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MCVYVYLILPLPHYVSGLFLGIGLGFMTAVCVIWFFTPPSAHKYHKLHKNLRHWNTRSLD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 IKEPEILKGWMNEIYNYDPETYHATLTHSVFVRLEGGTLRLSKPNKNISRRASYNEPKPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IKEPEILKGWMNEIYNYDPETYHATLTHSVFVRLEGGTLRLSKPNKNISRRASYNEPKPE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 VTYISQKIYDLSDSKIYLVPKTLARKRIWNKKYPICIELGQQDDFMSKAQTDKETSEEKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VTYISQKIYDLSDSKIYLVPKTLARKRIWNKKYPICIELGQQDDFMSKAQTDKETSEEKP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 PAEGSEDPKKPPRPQEGTRSSQRDQILYLFGRTGREKEEWFRRFILASKLKSEIKKSSGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PAEGSEDPKKPPRPQEGTRSSQRDQILYLFGRTGREKEEWFRRFILASKLKSEIKKSSGV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 SGGKPGLLPAHSRHNSPSGHLTHSRSSSKGSVEEIMSQPKQKELAGSVRQKMLLDYSVYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SGGKPGLLPAHSRHNSPSGHLTHSRSSSKGSVEEIMSQPKQKELAGSVRQKMLLDYSVYM
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 GRCVPQESRSPQRSPLQSAESSPTAGKKLPEVPPSEEEEQEAWVNALLGRIFWDFLGEKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GRCVPQESRSPQRSPLQSAESSPTAGKKLPEVPPSEEEEQEAWVNALLGRIFWDFLGEKY
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 WSDLVSKKIQMKLSKIKLPYFMNELTLTELDMGVAVPKILQAFKPYVDHQGLWIDLEMSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 WSDLVSKKIQMKLSKIKLPYFMNELTLTELDMGVAVPKILQAFKPYVDHQGLWIDLEMSY
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 NGSFLMTLETKMNLTKLGKEPLVEALKVGEIGKEGCRPRAFCLADSDEESSSAGSSEEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 NGSFLMTLETKMNLTKLGKEPLVEALKVGEIGKEGCRPRAFCLADSDEESSSAGSSEEDD
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 APEPSGGDKQLLPGAEGYVGGHRTSKIMRFVDKITKSKYFQKATETEFIKKKIEEVSNTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 APEPSGGDKQLLPGAEGYVGGHRTSKIMRFVDKITKSKYFQKATETEFIKKKIEEVSNTP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 LLLTVEVQECRGTLAVNIPPPPTDRVWYGFRKPPHVELKARPKLGEREVTLVHVTDWIEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LLLTVEVQECRGTLAVNIPPPPTDRVWYGFRKPPHVELKARPKLGEREVTLVHVTDWIEK
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120
pF1KA1 KLEQEFQKVFVMPNMDDVYITIMHSAMDPRSTSCLLKDPPVEAADQP
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KLEQEFQKVFVMPNMDDVYITIMHSAMDPRSTSCLLKDPPVEAADQP
1090 1100 1110 1120
>>CCDS11658.1 TEX2 gene_id:55852|Hs108|chr17 (1134 aa)
initn: 4725 init1: 4725 opt: 7393 Z-score: 5136.3 bits: 962.2 E(32554): 0
Smith-Waterman score: 7393; 99.4% identity (99.4% similar) in 1134 aa overlap (1-1127:1-1134)
10 20 30 40 50 60
pF1KA1 MTSLYGRHAEKTTDMPKPSAPKVHVQRSVSRDTIAIHFSASGEEEEEEEEEFREYFEEGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTSLYGRHAEKTTDMPKPSAPKVHVQRSVSRDTIAIHFSASGEEEEEEEEEFREYFEEGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 DDQSIVTGLEAKEDLYLEPQVGHDPAGPAASPVLADGLSVSQAPAILPVSKNTVKLLESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DDQSIVTGLEAKEDLYLEPQVGHDPAGPAASPVLADGLSVSQAPAILPVSKNTVKLLESP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 VPAAQVLSTVPLAVSPGSSSSGPLASSPSVSSLSEQKTSSSSPLSSPSKSPILSSSASTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VPAAQVLSTVPLAVSPGSSSSGPLASSPSVSSLSEQKTSSSSPLSSPSKSPILSSSASTS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TLSSAKPFMSLVKSLSTEVEPKESPHPARHRHLMKTLVKSLSTDTSRQESDTVSYKPPDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TLSSAKPFMSLVKSLSTEVEPKESPHPARHRHLMKTLVKSLSTDTSRQESDTVSYKPPDS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 KLNLHLFKQFTQPRNTGGDSKTAPSSPLTSPSDTRSFFKVPEMEAKIEDTKRRLSEVIYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KLNLHLFKQFTQPRNTGGDSKTAPSSPLTSPSDTRSFFKVPEMEAKIEDTKRRLSEVIYE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 PFQLLSKIIGEESGSHRPKALSSSASELSNLSSLNGHLESNNNYSIKEEECDSEGDGYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PFQLLSKIIGEESGSHRPKALSSSASELSNLSSLNGHLESNNNYSIKEEECDSEGDGYGS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 DSNIPRSDHPKSTGEPTREIELKSSQGSSLKDLGLKTSSLVLEKCSLSALVSKEDEEFCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DSNIPRSDHPKSTGEPTREIELKSSQGSSLKDLGLKTSSLVLEKCSLSALVSKEDEEFCE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 LYTEDFDLETEGESKVDKLSDIPLKPEVLAEDGVVLDSEDEVDSAVQHPELPVKTLGFFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LYTEDFDLETEGESKVDKLSDIPLKPEVLAEDGVVLDSEDEVDSAVQHPELPVKTLGFFI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 MCVYVYLILPLPHYVSGLFLGIGLGFMTAVCVIWFFTPPSAHKYHKLHKNLRHWNTRSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MCVYVYLILPLPHYVSGLFLGIGLGFMTAVCVIWFFTPPSAHKYHKLHKNLRHWNTRSLD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 IKEPEILKGWMNEIYNYDPETYHATLTHSVFVRLEGGTLRLSKPNKNISRRASYNEPKPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IKEPEILKGWMNEIYNYDPETYHATLTHSVFVRLEGGTLRLSKPNKNISRRASYNEPKPE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 VTYISQKIYDLSDSKIYLVPKTLARKRIWNKKYPICIELGQQDDFMSKAQTDKETSEEKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VTYISQKIYDLSDSKIYLVPKTLARKRIWNKKYPICIELGQQDDFMSKAQTDKETSEEKP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 PAEGSEDPKKPPRPQEGTRSSQRDQILYLFGRTGREKEEWFRRFILASKLKSEIKKSSGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PAEGSEDPKKPPRPQEGTRSSQRDQILYLFGRTGREKEEWFRRFILASKLKSEIKKSSGV
670 680 690 700 710 720
730 740 750 760 770
pF1KA1 SGGKP-------GLLPAHSRHNSPSGHLTHSRSSSKGSVEEIMSQPKQKELAGSVRQKML
::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SGGKPAPVFLAPGLLPAHSRHNSPSGHLTHSRSSSKGSVEEIMSQPKQKELAGSVRQKML
730 740 750 760 770 780
780 790 800 810 820 830
pF1KA1 LDYSVYMGRCVPQESRSPQRSPLQSAESSPTAGKKLPEVPPSEEEEQEAWVNALLGRIFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LDYSVYMGRCVPQESRSPQRSPLQSAESSPTAGKKLPEVPPSEEEEQEAWVNALLGRIFW
790 800 810 820 830 840
840 850 860 870 880 890
pF1KA1 DFLGEKYWSDLVSKKIQMKLSKIKLPYFMNELTLTELDMGVAVPKILQAFKPYVDHQGLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DFLGEKYWSDLVSKKIQMKLSKIKLPYFMNELTLTELDMGVAVPKILQAFKPYVDHQGLW
850 860 870 880 890 900
900 910 920 930 940 950
pF1KA1 IDLEMSYNGSFLMTLETKMNLTKLGKEPLVEALKVGEIGKEGCRPRAFCLADSDEESSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IDLEMSYNGSFLMTLETKMNLTKLGKEPLVEALKVGEIGKEGCRPRAFCLADSDEESSSA
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KA1 GSSEEDDAPEPSGGDKQLLPGAEGYVGGHRTSKIMRFVDKITKSKYFQKATETEFIKKKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GSSEEDDAPEPSGGDKQLLPGAEGYVGGHRTSKIMRFVDKITKSKYFQKATETEFIKKKI
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KA1 EEVSNTPLLLTVEVQECRGTLAVNIPPPPTDRVWYGFRKPPHVELKARPKLGEREVTLVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EEVSNTPLLLTVEVQECRGTLAVNIPPPPTDRVWYGFRKPPHVELKARPKLGEREVTLVH
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120
pF1KA1 VTDWIEKKLEQEFQKVFVMPNMDDVYITIMHSAMDPRSTSCLLKDPPVEAADQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VTDWIEKKLEQEFQKVFVMPNMDDVYITIMHSAMDPRSTSCLLKDPPVEAADQP
1090 1100 1110 1120 1130
1127 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 11:21:13 2016 done: Thu Nov 3 11:21:14 2016
Total Scan time: 5.800 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]