Result of FASTA (ccds) for pF1KA1762
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1762, 1522 aa
  1>>>pF1KA1762 1522 - 1522 aa - 1522 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.8393+/-0.00103; mu= -5.7707+/- 0.063
 mean_var=533.6251+/-110.198, 0's: 0 Z-trim(117.8): 34  B-trim: 0 in 0/55
 Lambda= 0.055521
 statistics sampled from 18610 (18635) to 18610 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.572), width:  16
 Scan time:  5.750

The best scores are:                                      opt bits E(32554)
CCDS55907.1 ZFHX2 gene_id:85446|Hs108|chr14        (2572) 10472 854.7       0


>>CCDS55907.1 ZFHX2 gene_id:85446|Hs108|chr14             (2572 aa)
 initn: 10472 init1: 10472 opt: 10472  Z-score: 4546.5  bits: 854.7 E(32554):    0
Smith-Waterman score: 10472; 100.0% identity (100.0% similar) in 1522 aa overlap (1-1522:1051-2572)

                                             10        20        30
pF1KA1                               MTFTTKVLSAPTLSPLDNGQEPPTHGPEPT
                                     ::::::::::::::::::::::::::::::
CCDS55 RPALHFHLSHLHNVVPECVEKLLLVATTVEMTFTTKVLSAPTLSPLDNGQEPPTHGPEPT
             1030      1040      1050      1060      1070      1080

               40        50        60        70        80        90
pF1KA1 PSRDQAAEGPNLTPEASPDPLPEPPLASVEVPDKPSGSPGQPPSPAPSPVPEPDAQAEDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PSRDQAAEGPNLTPEASPDPLPEPPLASVEVPDKPSGSPGQPPSPAPSPVPEPDAQAEDV
             1090      1100      1110      1120      1130      1140

              100       110       120       130       140       150
pF1KA1 APPPTMAEEEEGTTGELRSAEPAPADSRHPLTYRKTTNFALDKFLDPARPYKCTVCKESF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 APPPTMAEEEEGTTGELRSAEPAPADSRHPLTYRKTTNFALDKFLDPARPYKCTVCKESF
             1150      1160      1170      1180      1190      1200

              160       170       180       190       200       210
pF1KA1 TQKNILLVHYNSVSHLHKMKKAAIDPSAPARGEAGAPPTTTAATDKPFKCTVCRVSYNQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TQKNILLVHYNSVSHLHKMKKAAIDPSAPARGEAGAPPTTTAATDKPFKCTVCRVSYNQS
             1210      1220      1230      1240      1250      1260

              220       230       240       250       260       270
pF1KA1 STLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEGEVGTEKKGPDTSGFISGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 STLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEGEVGTEKKGPDTSGFISGL
             1270      1280      1290      1300      1310      1320

              280       290       300       310       320       330
pF1KA1 PFLSPPPPPLDLHRFPAPLFTPPVLPPFPLVPESLLKLQQQQLLLPFYLHDLKVGPKLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PFLSPPPPPLDLHRFPAPLFTPPVLPPFPLVPESLLKLQQQQLLLPFYLHDLKVGPKLTL
             1330      1340      1350      1360      1370      1380

              340       350       360       370       380       390
pF1KA1 AGPAPVLSLPAATPPPPPQPPKAELAEREWERPPMAKEGNEAGPSSPPDPLPNEAARTAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AGPAPVLSLPAATPPPPPQPPKAELAEREWERPPMAKEGNEAGPSSPPDPLPNEAARTAA
             1390      1400      1410      1420      1430      1440

              400       410       420       430       440       450
pF1KA1 KALLENFGFELVIQYNEGKQAVPPPPTPPPPEALGGGDKLACGACGKLFSNMLILKTHEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KALLENFGFELVIQYNEGKQAVPPPPTPPPPEALGGGDKLACGACGKLFSNMLILKTHEE
             1450      1460      1470      1480      1490      1500

              460       470       480       490       500       510
pF1KA1 HVHRRFLPFEALSRYAAQFRKSYDSLYPPLAEPPKPPDGSLDSPVPHLGPPFLVPEPEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HVHRRFLPFEALSRYAAQFRKSYDSLYPPLAEPPKPPDGSLDSPVPHLGPPFLVPEPEAG
             1510      1520      1530      1540      1550      1560

              520       530       540       550       560       570
pF1KA1 GTRAPEERSRAGGHWPIEEEESSRGNLPPLVPAGRRFSRTKFTEFQTQALQSFFETSAYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GTRAPEERSRAGGHWPIEEEESSRGNLPPLVPAGRRFSRTKFTEFQTQALQSFFETSAYP
             1570      1580      1590      1600      1610      1620

              580       590       600       610       620       630
pF1KA1 KDGEVERLASLLGLASRVVVVWFQNARQKARKNACEGGSMPTGGGTGGASGCRRCHATFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KDGEVERLASLLGLASRVVVVWFQNARQKARKNACEGGSMPTGGGTGGASGCRRCHATFS
             1630      1640      1650      1660      1670      1680

              640       650       660       670       680       690
pF1KA1 CVFELVRHLKKCYDDQTLEEEEEEAERGEEEEEVEEEEVEEEQGLEPPAGPEGPLPEPPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CVFELVRHLKKCYDDQTLEEEEEEAERGEEEEEVEEEEVEEEQGLEPPAGPEGPLPEPPD
             1690      1700      1710      1720      1730      1740

              700       710       720       730       740       750
pF1KA1 GEELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSHRRLHFLPSLQPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GEELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSHRRLHFLPSLQPSA
             1750      1760      1770      1780      1790      1800

              760       770       780       790       800       810
pF1KA1 PPQLLDLPLLVFGERNPLVAATSPMPGPPLKRKHEDGSLSPTGSEAGGGGEGEPPRDKRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PPQLLDLPLLVFGERNPLVAATSPMPGPPLKRKHEDGSLSPTGSEAGGGGEGEPPRDKRL
             1810      1820      1830      1840      1850      1860

              820       830       840       850       860       870
pF1KA1 RTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERKGQFRST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERKGQFRST
             1870      1880      1890      1900      1910      1920

              880       890       900       910       920       930
pF1KA1 PGGVPSPAVKPPATATPASLPKFNLLLGKVDDGTGREAPKREAPAFPYPTATLASGPQPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PGGVPSPAVKPPATATPASLPKFNLLLGKVDDGTGREAPKREAPAFPYPTATLASGPQPF
             1930      1940      1950      1960      1970      1980

              940       950       960       970       980       990
pF1KA1 LPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAE
             1990      2000      2010      2020      2030      2040

             1000      1010      1020      1030      1040      1050
pF1KA1 PESPGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PESPGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGE
             2050      2060      2070      2080      2090      2100

             1060      1070      1080      1090      1100      1110
pF1KA1 EIGLPKRVIQVWFQNARAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EIGLPKRVIQVWFQNARAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVS
             2110      2120      2130      2140      2150      2160

             1120      1130      1140      1150      1160      1170
pF1KA1 CRGHLFSRQHLAKLKEAVRAQLKSESKCYDLAPAPEAPPALKAPPATTPASMPLGAAPTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CRGHLFSRQHLAKLKEAVRAQLKSESKCYDLAPAPEAPPALKAPPATTPASMPLGAAPTL
             2170      2180      2190      2200      2210      2220

             1180      1190      1200      1210      1220      1230
pF1KA1 PRLAPVLLSGPALAQPPLGNLAPFNSGPAASSGLLGLATSVLPTTTVVQTAGPGRPLPQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PRLAPVLLSGPALAQPPLGNLAPFNSGPAASSGLLGLATSVLPTTTVVQTAGPGRPLPQR
             2230      2240      2250      2260      2270      2280

             1240      1250      1260      1270      1280      1290
pF1KA1 PMPDQTNTSTAGTTDPVPGPPTEPLGDKVSSERKPVAGPTSSSNDALKNLKALKTTVPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PMPDQTNTSTAGTTDPVPGPPTEPLGDKVSSERKPVAGPTSSSNDALKNLKALKTTVPAL
             2290      2300      2310      2320      2330      2340

             1300      1310      1320      1330      1340      1350
pF1KA1 LGGQFLPFPLPPAGGTAPPAVFGPQLQGAYFQQLYGMKKGLFPMNPMIPQTLIGLLPNAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LGGQFLPFPLPPAGGTAPPAVFGPQLQGAYFQQLYGMKKGLFPMNPMIPQTLIGLLPNAL
             2350      2360      2370      2380      2390      2400

             1360      1370      1380      1390      1400      1410
pF1KA1 LQPPPQPPEPTATAPPKPPELPAPGEGEAGEVDELLTGSTGISTVDVTHRYLCRQCKMAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LQPPPQPPEPTATAPPKPPELPAPGEGEAGEVDELLTGSTGISTVDVTHRYLCRQCKMAF
             2410      2420      2430      2440      2450      2460

             1420      1430      1440      1450      1460      1470
pF1KA1 DGEAPATAHQRSFCFFGRGSGGSMPPPLRVPICTYHCLACEVLLSGREALASHLRSSAHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DGEAPATAHQRSFCFFGRGSGGSMPPPLRVPICTYHCLACEVLLSGREALASHLRSSAHR
             2470      2480      2490      2500      2510      2520

             1480      1490      1500      1510      1520  
pF1KA1 RKAAPPQGGPPISITNAATAASAAVAFAKEEARLPHTDSNPKTTTTSTLLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RKAAPPQGGPPISITNAATAASAAVAFAKEEARLPHTDSNPKTTTTSTLLAL
             2530      2540      2550      2560      2570  




1522 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:00:57 2016 done: Wed Nov  2 22:00:58 2016
 Total Scan time:  5.750 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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