Result of FASTA (ccds) for
pF1KA1762
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1762, 1522 aa
1>>>pF1KA1762 1522 - 1522 aa - 1522 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.8393+/-0.00103; mu= -5.7707+/- 0.063
mean_var=533.6251+/-110.198, 0's: 0 Z-trim(117.8): 34 B-trim: 0 in 0/55
Lambda= 0.055521
statistics sampled from 18610 (18635) to 18610 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.572), width: 16
Scan time: 5.750
The best scores are: opt bits E(32554)
CCDS55907.1 ZFHX2 gene_id:85446|Hs108|chr14 (2572) 10472 854.7 0
>>CCDS55907.1 ZFHX2 gene_id:85446|Hs108|chr14 (2572 aa)
initn: 10472 init1: 10472 opt: 10472 Z-score: 4546.5 bits: 854.7 E(32554): 0
Smith-Waterman score: 10472; 100.0% identity (100.0% similar) in 1522 aa overlap (1-1522:1051-2572)
10 20 30
pF1KA1 MTFTTKVLSAPTLSPLDNGQEPPTHGPEPT
::::::::::::::::::::::::::::::
CCDS55 RPALHFHLSHLHNVVPECVEKLLLVATTVEMTFTTKVLSAPTLSPLDNGQEPPTHGPEPT
1030 1040 1050 1060 1070 1080
40 50 60 70 80 90
pF1KA1 PSRDQAAEGPNLTPEASPDPLPEPPLASVEVPDKPSGSPGQPPSPAPSPVPEPDAQAEDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PSRDQAAEGPNLTPEASPDPLPEPPLASVEVPDKPSGSPGQPPSPAPSPVPEPDAQAEDV
1090 1100 1110 1120 1130 1140
100 110 120 130 140 150
pF1KA1 APPPTMAEEEEGTTGELRSAEPAPADSRHPLTYRKTTNFALDKFLDPARPYKCTVCKESF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 APPPTMAEEEEGTTGELRSAEPAPADSRHPLTYRKTTNFALDKFLDPARPYKCTVCKESF
1150 1160 1170 1180 1190 1200
160 170 180 190 200 210
pF1KA1 TQKNILLVHYNSVSHLHKMKKAAIDPSAPARGEAGAPPTTTAATDKPFKCTVCRVSYNQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TQKNILLVHYNSVSHLHKMKKAAIDPSAPARGEAGAPPTTTAATDKPFKCTVCRVSYNQS
1210 1220 1230 1240 1250 1260
220 230 240 250 260 270
pF1KA1 STLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEGEVGTEKKGPDTSGFISGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 STLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEGEVGTEKKGPDTSGFISGL
1270 1280 1290 1300 1310 1320
280 290 300 310 320 330
pF1KA1 PFLSPPPPPLDLHRFPAPLFTPPVLPPFPLVPESLLKLQQQQLLLPFYLHDLKVGPKLTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PFLSPPPPPLDLHRFPAPLFTPPVLPPFPLVPESLLKLQQQQLLLPFYLHDLKVGPKLTL
1330 1340 1350 1360 1370 1380
340 350 360 370 380 390
pF1KA1 AGPAPVLSLPAATPPPPPQPPKAELAEREWERPPMAKEGNEAGPSSPPDPLPNEAARTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AGPAPVLSLPAATPPPPPQPPKAELAEREWERPPMAKEGNEAGPSSPPDPLPNEAARTAA
1390 1400 1410 1420 1430 1440
400 410 420 430 440 450
pF1KA1 KALLENFGFELVIQYNEGKQAVPPPPTPPPPEALGGGDKLACGACGKLFSNMLILKTHEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KALLENFGFELVIQYNEGKQAVPPPPTPPPPEALGGGDKLACGACGKLFSNMLILKTHEE
1450 1460 1470 1480 1490 1500
460 470 480 490 500 510
pF1KA1 HVHRRFLPFEALSRYAAQFRKSYDSLYPPLAEPPKPPDGSLDSPVPHLGPPFLVPEPEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HVHRRFLPFEALSRYAAQFRKSYDSLYPPLAEPPKPPDGSLDSPVPHLGPPFLVPEPEAG
1510 1520 1530 1540 1550 1560
520 530 540 550 560 570
pF1KA1 GTRAPEERSRAGGHWPIEEEESSRGNLPPLVPAGRRFSRTKFTEFQTQALQSFFETSAYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GTRAPEERSRAGGHWPIEEEESSRGNLPPLVPAGRRFSRTKFTEFQTQALQSFFETSAYP
1570 1580 1590 1600 1610 1620
580 590 600 610 620 630
pF1KA1 KDGEVERLASLLGLASRVVVVWFQNARQKARKNACEGGSMPTGGGTGGASGCRRCHATFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KDGEVERLASLLGLASRVVVVWFQNARQKARKNACEGGSMPTGGGTGGASGCRRCHATFS
1630 1640 1650 1660 1670 1680
640 650 660 670 680 690
pF1KA1 CVFELVRHLKKCYDDQTLEEEEEEAERGEEEEEVEEEEVEEEQGLEPPAGPEGPLPEPPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CVFELVRHLKKCYDDQTLEEEEEEAERGEEEEEVEEEEVEEEQGLEPPAGPEGPLPEPPD
1690 1700 1710 1720 1730 1740
700 710 720 730 740 750
pF1KA1 GEELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSHRRLHFLPSLQPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GEELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSHRRLHFLPSLQPSA
1750 1760 1770 1780 1790 1800
760 770 780 790 800 810
pF1KA1 PPQLLDLPLLVFGERNPLVAATSPMPGPPLKRKHEDGSLSPTGSEAGGGGEGEPPRDKRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PPQLLDLPLLVFGERNPLVAATSPMPGPPLKRKHEDGSLSPTGSEAGGGGEGEPPRDKRL
1810 1820 1830 1840 1850 1860
820 830 840 850 860 870
pF1KA1 RTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERKGQFRST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERKGQFRST
1870 1880 1890 1900 1910 1920
880 890 900 910 920 930
pF1KA1 PGGVPSPAVKPPATATPASLPKFNLLLGKVDDGTGREAPKREAPAFPYPTATLASGPQPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PGGVPSPAVKPPATATPASLPKFNLLLGKVDDGTGREAPKREAPAFPYPTATLASGPQPF
1930 1940 1950 1960 1970 1980
940 950 960 970 980 990
pF1KA1 LPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAE
1990 2000 2010 2020 2030 2040
1000 1010 1020 1030 1040 1050
pF1KA1 PESPGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PESPGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGE
2050 2060 2070 2080 2090 2100
1060 1070 1080 1090 1100 1110
pF1KA1 EIGLPKRVIQVWFQNARAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EIGLPKRVIQVWFQNARAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVS
2110 2120 2130 2140 2150 2160
1120 1130 1140 1150 1160 1170
pF1KA1 CRGHLFSRQHLAKLKEAVRAQLKSESKCYDLAPAPEAPPALKAPPATTPASMPLGAAPTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CRGHLFSRQHLAKLKEAVRAQLKSESKCYDLAPAPEAPPALKAPPATTPASMPLGAAPTL
2170 2180 2190 2200 2210 2220
1180 1190 1200 1210 1220 1230
pF1KA1 PRLAPVLLSGPALAQPPLGNLAPFNSGPAASSGLLGLATSVLPTTTVVQTAGPGRPLPQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PRLAPVLLSGPALAQPPLGNLAPFNSGPAASSGLLGLATSVLPTTTVVQTAGPGRPLPQR
2230 2240 2250 2260 2270 2280
1240 1250 1260 1270 1280 1290
pF1KA1 PMPDQTNTSTAGTTDPVPGPPTEPLGDKVSSERKPVAGPTSSSNDALKNLKALKTTVPAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PMPDQTNTSTAGTTDPVPGPPTEPLGDKVSSERKPVAGPTSSSNDALKNLKALKTTVPAL
2290 2300 2310 2320 2330 2340
1300 1310 1320 1330 1340 1350
pF1KA1 LGGQFLPFPLPPAGGTAPPAVFGPQLQGAYFQQLYGMKKGLFPMNPMIPQTLIGLLPNAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LGGQFLPFPLPPAGGTAPPAVFGPQLQGAYFQQLYGMKKGLFPMNPMIPQTLIGLLPNAL
2350 2360 2370 2380 2390 2400
1360 1370 1380 1390 1400 1410
pF1KA1 LQPPPQPPEPTATAPPKPPELPAPGEGEAGEVDELLTGSTGISTVDVTHRYLCRQCKMAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LQPPPQPPEPTATAPPKPPELPAPGEGEAGEVDELLTGSTGISTVDVTHRYLCRQCKMAF
2410 2420 2430 2440 2450 2460
1420 1430 1440 1450 1460 1470
pF1KA1 DGEAPATAHQRSFCFFGRGSGGSMPPPLRVPICTYHCLACEVLLSGREALASHLRSSAHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DGEAPATAHQRSFCFFGRGSGGSMPPPLRVPICTYHCLACEVLLSGREALASHLRSSAHR
2470 2480 2490 2500 2510 2520
1480 1490 1500 1510 1520
pF1KA1 RKAAPPQGGPPISITNAATAASAAVAFAKEEARLPHTDSNPKTTTTSTLLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RKAAPPQGGPPISITNAATAASAAVAFAKEEARLPHTDSNPKTTTTSTLLAL
2530 2540 2550 2560 2570
1522 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 22:00:57 2016 done: Wed Nov 2 22:00:58 2016
Total Scan time: 5.750 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]