FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1795, 433 aa
  1>>>pF1KA1795 433 - 433 aa - 433 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2725+/-0.000864; mu= 4.5664+/- 0.052
 mean_var=152.1878+/-30.602, 0's: 0 Z-trim(111.9): 11  B-trim: 69 in 1/52
 Lambda= 0.103964
 statistics sampled from 12727 (12733) to 12727 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.391), width:  16
 Scan time:  2.910

The best scores are:                                      opt bits E(32554)
CCDS7451.1 LCOR gene_id:84458|Hs108|chr10          ( 433) 2839 437.3 1.4e-122
CCDS53561.1 LCOR gene_id:84458|Hs108|chr10         ( 406) 2655 409.7 2.7e-114
CCDS54749.1 LCORL gene_id:254251|Hs108|chr4        ( 602)  389 69.9 7.7e-12


>>CCDS7451.1 LCOR gene_id:84458|Hs108|chr10               (433 aa)
 initn: 2839 init1: 2839 opt: 2839  Z-score: 2314.2  bits: 437.3 E(32554): 1.4e-122
Smith-Waterman score: 2839; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:1-433)

               10        20        30        40        50        60
pF1KA1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
              370       380       390       400       410       420

              430   
pF1KA1 GEAAQSANESKNE
       :::::::::::::
CCDS74 GEAAQSANESKNE
              430   

>>CCDS53561.1 LCOR gene_id:84458|Hs108|chr10              (406 aa)
 initn: 2655 init1: 2655 opt: 2655  Z-score: 2165.5  bits: 409.7 E(32554): 2.7e-114
Smith-Waterman score: 2655; 100.0% identity (100.0% similar) in 404 aa overlap (1-404:1-404)

               10        20        30        40        50        60
pF1KA1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
       ::::::::::::::::::::::::::::::::::::::::::::                
CCDS53 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMSG              
              370       380       390       400                    

              430   
pF1KA1 GEAAQSANESKNE

>>CCDS54749.1 LCORL gene_id:254251|Hs108|chr4             (602 aa)
 initn: 571 init1: 383 opt: 389  Z-score: 326.0  bits: 69.9 E(32554): 7.7e-12
Smith-Waterman score: 607; 35.9% identity (60.3% similar) in 443 aa overlap (1-403:161-579)

                                             10        20        30
pF1KA1                               MQRMIQQFAAEYTSKNSSTQDPSQPNSTKN
                                     :..::.::: :: ::...::.      ..:
CCDS54 QAENYLNALFRKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQE------NRN
              140       150       160       170       180          

               40        50        60        70         80         
pF1KA1 QSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQ-DGVLDLSTKK
        :.   : :  :     ..:      :. .:..:::::: . : . ..: ::::::::::
CCDS54 GSIGP-SIVCKSIQMNQAENS-----LQEEQEGPLDLTVNRMQEQNTQQGDGVLDLSTKK
           190       200            210       220       230        

      90       100       110       120           130          140  
pF1KA1 SPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGL-RSG---DGVPPRSLQD---GTREG
       .    : .  .:  :. .. :.  ::  . : : . ::.   ::.  ..:.:   :. . 
CCDS54 T----SIKSEESSICDPSSENSVAGRLHRNREDYVERSAEFADGLLSKALKDIQSGALDI
          240       250       260       270       280       290    

            150       160       170       180                190   
pF1KA1 FGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQH---------LILSREA
          .    .:  ..: .  : :  ..    ::.  .  . : ..          .:.. :
CCDS54 NKAGILYGIP-QKTLLLHLEALPAGK---PASFKNKTRDFHDSYSYKDSKETCAVLQKVA
          300        310          320       330       340       350

           200        210       220       230       240        250 
pF1KA1 SWAKPHYE-FNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQDGKK-DVSHSSP-
        ::. . :  . :....  .. ..  .   .: . . . ::. : :. ... .   :.: 
CCDS54 LWARAQAERTEKSKLNLLETSEIKFPTASTYLHQLT-LQKMVTQFKEKNESLQYETSNPT
              360       370       380        390       400         

              260       270       280           290       300      
pF1KA1 VDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALS----KKLRAILPKQSRKSMLD
       :.:::::.:  ..: .:.   .   . . . :.: :.:     .::. :::::..  .  
CCDS54 VQLKIPQLRVSSVS-KSQPDGSGLLDVMYQVSKTSSVLEGSALQKLKNILPKQNK--IEC
     410       420        430       440       450       460        

              310             320       330           340       350
pF1KA1 AGP------DSWGSDAE------QSTSGQPYPTSDQEGD----PGSKQPRKKRGRYRQYN
       .::      ::.   ..      .: .:    ::..  :      ::::::::::::::.
CCDS54 SGPVTHSSVDSYFLHGDLSPLCLNSKNGTVDGTSENTEDGLDRKDSKQPRKKRGRYRQYD
        470       480       490       500       510       520      

              360       370       380       390       400       410
pF1KA1 SEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPD
        ::.::::..::::::::::::.:::.:::::::::::: ::::.:::::..:       
CCDS54 HEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSGTLKTPPKKKLRLPDTGLYN
        530       540       550       560       570       580      

              420       430   
pF1KA1 VSVKIELDPQGEAAQSANESKNE
                              
CCDS54 MTDSGTGSCKNSSKPV       
        590       600         




433 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:02:18 2016 done: Wed Nov  2 22:02:19 2016
 Total Scan time:  2.910 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]