Result of FASTA (ccds) for
pF1KA1803
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1803, 1412 aa
1>>>pF1KA1803 1412 - 1412 aa - 1412 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.8533+/-0.00127; mu= 2.0581+/- 0.074
mean_var=382.8464+/-97.786, 0's: 0 Z-trim(110.0): 218 B-trim: 652 in 1/52
Lambda= 0.065548
statistics sampled from 11046 (11282) to 11046 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.347), width: 16
Scan time: 4.420
The best scores are: opt bits E(32554)
CCDS35096.1 ZNF462 gene_id:58499|Hs108|chr9 (2506) 5972 581.4 1.1e-164
>>CCDS35096.1 ZNF462 gene_id:58499|Hs108|chr9 (2506 aa)
initn: 5908 init1: 5908 opt: 5972 Z-score: 3070.0 bits: 581.4 E(32554): 1.1e-164
Smith-Waterman score: 9203; 95.7% identity (95.7% similar) in 1412 aa overlap (1-1412:1156-2506)
10 20 30
pF1KA1 MMRGVEGPQGSPRPPAPIQQLNRSSSERDG
::::::::::::::::::::::::::::::
CCDS35 VVGVLVHYQKRHPEIKVTAKYIRQAPPTAAMMRGVEGPQGSPRPPAPIQQLNRSSSERDG
1130 1140 1150 1160 1170 1180
40 50 60 70 80 90
pF1KA1 PPVENEMFFCQHCDYGNRTVKGVLIHYQKKHRDFKANADVIRQHTATIRSLCDRNQKKPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PPVENEMFFCQHCDYGNRTVKGVLIHYQKKHRDFKANADVIRQHTATIRSLCDRNQKKPA
1190 1200 1210 1220 1230 1240
100 110 120 130 140 150
pF1KA1 SCVLVSPSNLERDKTKLRALKCRQCSYTSPYFYALRKHIKKDHPALKATVTSIMRWAFLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SCVLVSPSNLERDKTKLRALKCRQCSYTSPYFYALRKHIKKDHPALKATVTSIMRWAFLD
1250 1260 1270 1280 1290 1300
160 170 180 190 200 210
pF1KA1 GLIEAGYHCEWCIYSHTEPNGLLLHYQRRHPEHYVDYTYMATKLWAGPDPSPPSLTMPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GLIEAGYHCEWCIYSHTEPNGLLLHYQRRHPEHYVDYTYMATKLWAGPDPSPPSLTMPAE
1310 1320 1330 1340 1350 1360
220 230 240 250 260 270
pF1KA1 AKTYRCRDCVFEAVSIWDITNHYQAFHPWAMNGDESVLLDIIKEKDAVEKPILSSEELAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AKTYRCRDCVFEAVSIWDITNHYQAFHPWAMNGDESVLLDIIKEKDAVEKPILSSEELAG
1370 1380 1390 1400 1410 1420
280 290 300 310 320 330
pF1KA1 PVNCENSIPTPFPEQEAECPEDARLSPEKSLQLASANPAISSTPYQCTVCQSEYNNLHGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PVNCENSIPTPFPEQEAECPEDARLSPEKSLQLASANPAISSTPYQCTVCQSEYNNLHGL
1430 1440 1450 1460 1470 1480
340 350 360 370 380 390
pF1KA1 LTHYGKKHPGMKVKAADFAQDIDINPGAVYKCRHCPYINTRIHGVLTHYQKRHPSIKVTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LTHYGKKHPGMKVKAADFAQDIDINPGAVYKCRHCPYINTRIHGVLTHYQKRHPSIKVTA
1490 1500 1510 1520 1530 1540
400 410 420 430 440 450
pF1KA1 EDFVHDVEQSADISQNDVEETSRIFKQGYGAYRCKLCPYTHGTLEKLKIHYEKYHNQPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EDFVHDVEQSADISQNDVEETSRIFKQGYGAYRCKLCPYTHGTLEKLKIHYEKYHNQPEF
1550 1560 1570 1580 1590 1600
460 470 480 490 500 510
pF1KA1 DVFSQSPPKLPVPLEPEMTTEVSPSQVSITEEEVGEEPVSTSHFSTSHLVSHTVFRCQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DVFSQSPPKLPVPLEPEMTTEVSPSQVSITEEEVGEEPVSTSHFSTSHLVSHTVFRCQLC
1610 1620 1630 1640 1650 1660
520 530 540 550 560 570
pF1KA1 KYFCSTRKGIARHYRIKHNNVRAQPEGKNNLFKCALCAYTNPIRKGLAAHYQKRHDIDAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KYFCSTRKGIARHYRIKHNNVRAQPEGKNNLFKCALCAYTNPIRKGLAAHYQKRHDIDAY
1670 1680 1690 1700 1710 1720
580 590 600 610 620 630
pF1KA1 YTHCLAASRTISDKPNKVIIPSPPKDDSPQLSEELRRAVEKKKCSLCSFQSFSKKGIVSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YTHCLAASRTISDKPNKVIIPSPPKDDSPQLSEELRRAVEKKKCSLCSFQSFSKKGIVSH
1730 1740 1750 1760 1770 1780
640 650 660 670 680 690
pF1KA1 YMKRHPGVFPKKQHASKLGGYFTAVYADEHEKPTLMEEEERGNFEKAEVEGEAQEIEWLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YMKRHPGVFPKKQHASKLGGYFTAVYADEHEKPTLMEEEERGNFEKAEVEGEAQEIEWLP
1790 1800 1810 1820 1830 1840
700 710 720 730 740 750
pF1KA1 FRCIKCFKLSFSTAELLCMHYTDHHSRDLKRDFIILGNGPRLQNSTYQCKHCDSKLQSTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FRCIKCFKLSFSTAELLCMHYTDHHSRDLKRDFIILGNGPRLQNSTYQCKHCDSKLQSTA
1850 1860 1870 1880 1890 1900
760 770 780 790 800 810
pF1KA1 ELTSHLNIHNEEFQKRAKRQERRKQLLSKQKYADGAFADFKQERPFGHLEEVPKIKERKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ELTSHLNIHNEEFQKRAKRQERRKQLLSKQKYADGAFADFKQERPFGHLEEVPKIKERKV
1910 1920 1930 1940 1950 1960
820 830 840 850 860 870
pF1KA1 VGYKCKFCVEVHPTLRAICNHLRKHVQYGNVPAVSAAVKQEADDPAHLFLDGLEAAKDAS
:::::::::::::::::::::::::::::::::::::::
CCDS35 VGYKCKFCVEVHPTLRAICNHLRKHVQYGNVPAVSAAVK---------------------
1970 1980 1990 2000
880 890 900 910 920 930
pF1KA1 GALVGRVDGEHCLLDGMLEDETRPGGYHCSQCDRVLMSMQGLRSHERSHLALAMFTREDK
::::::::::::::::::::
CCDS35 ----------------------------------------GLRSHERSHLALAMFTREDK
2010 2020
940 950 960 970 980 990
pF1KA1 YSCQYCSFVSAFRHNLDRHMQTHHGHHKPFRCKLCSFKSSYNSRLKTHILKAHAGEHAYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YSCQYCSFVSAFRHNLDRHMQTHHGHHKPFRCKLCSFKSSYNSRLKTHILKAHAGEHAYK
2030 2040 2050 2060 2070 2080
1000 1010 1020 1030 1040 1050
pF1KA1 CSWCSFSTMTISQLKEHSLKVHGKALTLPRPRIVSLLSSHSHHSSQKATPAEEVEDSNDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 CSWCSFSTMTISQLKEHSLKVHGKALTLPRPRIVSLLSSHSHHSSQKATPAEEVEDSNDS
2090 2100 2110 2120 2130 2140
1060 1070 1080 1090 1100 1110
pF1KA1 SYSEPPDVQQQLNHYQSAALARNNSRVSPVPLSGAAAGTEQKTEAVLHCEFCEFSSGYIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SYSEPPDVQQQLNHYQSAALARNNSRVSPVPLSGAAAGTEQKTEAVLHCEFCEFSSGYIQ
2150 2160 2170 2180 2190 2200
1120 1130 1140 1150 1160 1170
pF1KA1 SIRRHYRDKHGGKKLFKCKDCSFYTGFKSAFTMHVEAGHSAVPEEGPKDLRCPLCLYHTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SIRRHYRDKHGGKKLFKCKDCSFYTGFKSAFTMHVEAGHSAVPEEGPKDLRCPLCLYHTK
2210 2220 2230 2240 2250 2260
1180 1190 1200 1210 1220 1230
pF1KA1 YKRNMIDHIVLHREERVVPIEVCRSKLSKYLQGVVFRCDKCTFTCSSDESLQQHIEKHNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YKRNMIDHIVLHREERVVPIEVCRSKLSKYLQGVVFRCDKCTFTCSSDESLQQHIEKHNE
2270 2280 2290 2300 2310 2320
1240 1250 1260 1270 1280 1290
pF1KA1 LKPYKCQLCYYETKHTEELDSHLRDEHKVSRNFELVGRVNLDQLEQMKEKMESSSSDDED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LKPYKCQLCYYETKHTEELDSHLRDEHKVSRNFELVGRVNLDQLEQMKEKMESSSSDDED
2330 2340 2350 2360 2370 2380
1300 1310 1320 1330 1340 1350
pF1KA1 KEEEMNSKAEDRELMRFSDHGAALNTEKRFPCEFCGRAFSQGSEWERHVLRHGMALNDTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KEEEMNSKAEDRELMRFSDHGAALNTEKRFPCEFCGRAFSQGSEWERHVLRHGMALNDTK
2390 2400 2410 2420 2430 2440
1360 1370 1380 1390 1400 1410
pF1KA1 QVSREEIHPKEIMENSVKMPSIEEKEDDEAIGIDFSLKNETVAICVVTADKSLLENAEAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QVSREEIHPKEIMENSVKMPSIEEKEDDEAIGIDFSLKNETVAICVVTADKSLLENAEAK
2450 2460 2470 2480 2490 2500
pF1KA1 KE
::
CCDS35 KE
1412 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 22:03:54 2016 done: Wed Nov 2 22:03:55 2016
Total Scan time: 4.420 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]