Result of FASTA (ccds) for
pF1KA1847
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1847, 511 aa
1>>>pF1KA1847 511 - 511 aa - 511 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6593+/-0.000803; mu= 13.8883+/- 0.049
mean_var=115.1843+/-22.546, 0's: 0 Z-trim(111.5): 13 B-trim: 0 in 0/50
Lambda= 0.119503
statistics sampled from 12417 (12425) to 12417 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.382), width: 16
Scan time: 3.240
The best scores are: opt bits E(32554)
CCDS13535.1 ZGPAT gene_id:84619|Hs108|chr20 ( 511) 3339 586.3 2.7e-167
CCDS13534.1 ZGPAT gene_id:84619|Hs108|chr20 ( 531) 1938 344.8 1.4e-94
CCDS56203.1 ZGPAT gene_id:84619|Hs108|chr20 ( 502) 1825 325.3 9.9e-89
>>CCDS13535.1 ZGPAT gene_id:84619|Hs108|chr20 (511 aa)
initn: 3339 init1: 3339 opt: 3339 Z-score: 3117.0 bits: 586.3 E(32554): 2.7e-167
Smith-Waterman score: 3339; 99.8% identity (99.8% similar) in 511 aa overlap (1-511:1-511)
10 20 30 40 50 60
pF1KA1 MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG
430 440 450 460 470 480
490 500 510
pF1KA1 AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF
:::::::::::::::::::::::::::::::
CCDS13 AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF
490 500 510
>>CCDS13534.1 ZGPAT gene_id:84619|Hs108|chr20 (531 aa)
initn: 1966 init1: 1937 opt: 1938 Z-score: 1811.4 bits: 344.8 E(32554): 1.4e-94
Smith-Waterman score: 3289; 96.0% identity (96.0% similar) in 531 aa overlap (1-511:1-531)
10 20 30 40 50 60
pF1KA1 MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD
190 200 210 220 230 240
250 260 270 280 290
pF1KA1 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDS-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSA
250 260 270 280 290 300
300 310 320 330 340
pF1KA1 -------------------GTCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRV
:::::::::::::::::::::::::::::::::::::::::
CCDS13 QSSALCPSLAVVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRV
310 320 330 340 350 360
350 360 370 380 390 400
pF1KA1 EPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNE
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA1 KLQGQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLQGQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEAL
430 440 450 460 470 480
470 480 490 500 510
pF1KA1 ARNAGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMTEF
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ARNAGRHSVASAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMTEF
490 500 510 520 530
>>CCDS56203.1 ZGPAT gene_id:84619|Hs108|chr20 (502 aa)
initn: 1825 init1: 1825 opt: 1825 Z-score: 1706.4 bits: 325.3 E(32554): 9.9e-89
Smith-Waterman score: 3252; 98.0% identity (98.0% similar) in 511 aa overlap (1-511:1-502)
10 20 30 40 50 60
pF1KA1 MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SLLAALDEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSG
::::::::::::::::::::::::::::::::::::::::: ::::::::::
CCDS56 VDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSD---------VVGSDAVDSG
250 260 270 280 290
310 320 330 340 350 360
pF1KA1 TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET
300 310 320 330 340 350
370 380 390 400 410 420
pF1KA1 LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNEKLQGQAPGALEAGAAPAGRR
360 370 380 390 400 410
430 440 450 460 470 480
pF1KA1 SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVASAQLQEKLAG
420 430 440 450 460 470
490 500 510
pF1KA1 AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF
:::::::::::::::::::::::::::::::
CCDS56 AQRQLGQLRAQEAGLQQEQRKADTHKKMTEF
480 490 500
511 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 22:07:24 2016 done: Wed Nov 2 22:07:24 2016
Total Scan time: 3.240 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]