Result of FASTA (ccds) for
pF1KA1849
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1849, 1073 aa
1>>>pF1KA1849 1073 - 1073 aa - 1073 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.2373+/-0.00104; mu= 0.4986+/- 0.062
mean_var=315.1989+/-64.803, 0's: 0 Z-trim(114.0): 50 B-trim: 128 in 1/51
Lambda= 0.072241
statistics sampled from 14548 (14589) to 14548 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.448), width: 16
Scan time: 4.600
The best scores are: opt bits E(32554)
CCDS43544.1 RADIL gene_id:55698|Hs108|chr7 (1075) 7115 756.2 8.8e-218
CCDS12731.1 RASIP1 gene_id:54922|Hs108|chr19 ( 963) 1266 146.5 2.6e-34
>>CCDS43544.1 RADIL gene_id:55698|Hs108|chr7 (1075 aa)
initn: 7126 init1: 5430 opt: 7115 Z-score: 4023.3 bits: 756.2 E(32554): 8.8e-218
Smith-Waterman score: 7115; 98.3% identity (98.7% similar) in 1075 aa overlap (1-1073:1-1075)
10 20 30 40 50 60
pF1KA1 MFYGTHFIMSPPTKSKLKRQSQLLSSMLSRTLSYKYRDLDSTFSSLGASDDPAELSTQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MFYGTHFIMSPPTKSKLKRQSQLLSSMLSRTLSYKYRDLDSTFSSLGASDDPAELSTQLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 APGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQAGQYVLCDVVGQAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 APGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQAGQYVLCDVVGQAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 DAGQRWQARCFRVFGDSEKPLLIQELWKPREGLSRRFELRKRSDVEELAAKEVDTITAGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DAGQRWQARCFRVFGDSEKPLLIQELWKPREGLSRRFELRKRSDVEELAAKEVDTITAGI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 NAQARRLQRSRAKGTPTPALGDARSSPPPRLRRTVSETSLSPVNALPAAAQGPEEPGPNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS43 NAQARRLQRSRAKGTPTPALGDARSSPPPRLRRTVSETSLSPVNALPAAAQGPEEPGPDA
190 200 210 220 230 240
250 260 270 280 290
pF1KA1 MRYSLYQSPHLLLLQGYSQQHPG-VCAQPGPAHG-GPADPSSKPSISLSAPDILPLHCTI
::::::::::::::::::::: . : . : : :::::::::::::::::::::
CCDS43 MRYSLYQSPHLLLLQGYSQQHDSLVYVLNRDRHTVGQRTPSSKPSISLSAPDILPLHCTI
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA1 RRQPLPDSGQAAGRLVLEPIPGAHISVNFSEVGHRTVVLHHGDLLSLGLYYLLLFKDPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RRQPLPDSGQAAGRLVLEPIPGAHISVNFSEVGHRTVVLHHGDLLSLGLYYLLLFKDPAQ
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA1 AQPLPARALARLRAVPQSCRLCGAALGARGAASPTQAALPRRQQLLLEFEPDLEDTLLQR
::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS43 AQPLPARALARLRAVPQSCRLCGAALGARGAASPTQAALPRRQQLLLEFEPHLEDTLLQR
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA1 IMTLIEPGGDDHKLTPAFLLCLCIQHSATHFQPGTFGQLLLKIARLIRETVWEKTKELAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IMTLIEPGGDDHKLTPAFLLCLCIQHSATHFQPGTFGQLLLKIARLIRETVWEKTKELAE
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA1 KQAQLQEPISLASCAMADLVPDLQPILFWMSNSIELLYFIQQKCPLYMQSMEEQLDITGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KQAQLQEPISLASCAMADLVPDLQPILFWMSNSIELLYFIQQKCPLYMQSMEEQLDITGS
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA1 KESLFSCTLTASEEAMAVLEEVVLYAFQQCVYYVSKSLYICLPALLECPPFQTERRESWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KESLFSCTLTASEEAMAVLEEVVLYAFQQCVYYVSKSLYICLPALLECPPFQTERRESWS
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA1 SAPELPEELRRVVSVYQAALDLLRQLQVHPEVASQMLAYLFFFSGTLLLNQLLDRGPSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SAPELPEELRRVVSVYQAALDLLRQLQVHPEVASQMLAYLFFFSGTLLLNQLLDRGPSLS
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA1 CFHWPRGVQACARLQQLLEWMRSAGFGAAGEHFFQKLSCTLNLLATPRAQLIQMSWTALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CFHWPRGVQACARLQQLLEWMRSAGFGAAGEHFFQKLSCTLNLLATPRAQLIQMSWTALR
670 680 690 700 710 720
720 730 740 750 760 770
pF1KA1 AAFPALSPAQLHRLLTHYQLASAMGPMSTWEPGAQDSPEAFRSEDVLESYENPPPIVLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AAFPALSPAQLHRLLTHYQLASAMGPMSTWEPGAQDSPEAFRSEDVLESYENPPPIVLPS
730 740 750 760 770 780
780 790 800 810 820 830
pF1KA1 DGFQVDLEANCLDDSIYQHLLYVRHFLWGLRSRASPGSPGRPGSGASQPVCPEGMHHVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DGFQVDLEANCLDDSIYQHLLYVRHFLWGLRSRASPGSPGRPGSGASQPVCPEGMHHVVL
790 800 810 820 830 840
840 850 860 870 880 890
pF1KA1 DGHLEAPSCPLAPRDPGPAAREVAPERTLPLRGAPWAQAPPGRQPGRGGSQAGPPHTDSS
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS43 DGHLEAPSCPLAPRDPGPAAREVAPERTLPLRGAPWAQAPPGRQPSRGGSQAGPPHTDSS
850 860 870 880 890 900
900 910 920 930 940 950
pF1KA1 CLLTPPSTPLGPEPGDPDWPESGGPCGKALPERQRNGLSGLRGAAPEGDSAALAEESPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CLLTPPSTPLGPEPGDPDWPESGGPCGKALPERQRNGLSGLRGAAPEGDSAALAEESPPA
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KA1 PSSRSSSTEDFCYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PSSRSSSTEDFCYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRL
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KA1 SLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHFRTPPL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHFRTPPL
1030 1040 1050 1060 1070
>>CCDS12731.1 RASIP1 gene_id:54922|Hs108|chr19 (963 aa)
initn: 1497 init1: 493 opt: 1266 Z-score: 729.4 bits: 146.5 E(32554): 2.6e-34
Smith-Waterman score: 1651; 37.1% identity (63.3% similar) in 856 aa overlap (47-827:130-963)
20 30 40 50 60 70
pF1KA1 LKRQSQLLSSMLSRTLSYKYRDLDSTFSSLGASDDPAELSTQLSAPGVLKVFGDSVCTGT
:.. .: . . :::::.:: .. .:.
CCDS12 TTGSSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGA
100 110 120 130 140 150
80 90 100 110 120
pF1KA1 HYKSVLATGTSSARELVKEALERYALDPRQAG---------QYVLCDVVGQAGDAG---Q
.:::::::. :.::::: ::::::.: .: ..:::..:. . ::
CCDS12 NYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALCDALGRPAAAGVGSG
160 170 180 190 200 210
130 140 150 160 170 180
pF1KA1 RWQARCFRVFGDSEKPLLIQELWKPREGLSRRFELRKRSDVEELAAKEVDTI-TAGINAQ
.:.:. .::.::::.:::.::::. : : .:::::: : ....: . . . : .:
CCDS12 EWRAEHLRVLGDSERPLLVQELWRARPGWARRFELRGREEARRLEQEAFGAADSEGTGAP
220 230 240 250 260 270
190 200 210 220
pF1KA1 ARRLQRSRAKG--------TPTPALGD---ARSSPPPR-----LRRTVSETSLS------
. : :..:... .: :. :. : :. : :::.::: ::.
CCDS12 SWRPQKNRSRAASGGAALASPGPGTGSGAPAGSGGKERSENLSLRRSVSELSLQGRRRRQ
280 290 300 310 320 330
230 240 250
pF1KA1 ------PVNALPAAAQ---GPEEPGP-NAMRYSLYQSP----HLLLLQGYS---------
.. :.::. : .:: . . : :.: ..::::::.
CCDS12 QERRQQALSMAPGAADAQIGTADPGDFDQLTQCLIQAPSNRPYFLLLQGYQDAQDFVVYV
340 350 360 370 380 390
260 270 280 290 300 310
pF1KA1 ---QQHPGVCAQPGPAHGGPADPSSKPSISLSAPDILPLHCTIRRQPLPDSGQAAGRLVL
.:: : .. : . : ..:. . :.:::::: :::.: : . ..
CCDS12 MTREQH--VFGRGGNSSGRGGSPAPYVDTFLNAPDILPRHCTVRAGPEHPA-------MV
400 410 420 430 440 450
320 330 340 350 360 370
pF1KA1 EPIPGAHISVNFSEVGHRTVVLHHGDLLSLGLYYLLLFKDPAQAQPLPARAL---ARLRA
.: :: .. : . . : . :: ::::.:: ..:...::: . ::: :: :
CCDS12 RPSRGAPVTHN-GCLLLREAELHPGDLLGLGEHFLFMYKDPRTGGSGPARPPWLPARPGA
460 470 480 490 500
380 390 400 410 420
pF1KA1 VPQ------SCRLCGAALGARGAASPTQAALPRRQQLLLEFEPDLEDTLLQRIMTLIEPG
.: :::::: .: :: : : : :. .: .:.: :..:: .:. :
CCDS12 TPPGPGWAFSCRLCGRGLQERGEA--LAAYLDGREPVL-RFRPREEEALLGEIVRAAAAG
510 520 530 540 550 560
430 440 450 460 470 480
pF1KA1 -GDDHKLTPAFLLCLCIQHSATHFQPGTFGQLLLKIARLIRETVWEKTKELAEKQAQLQ-
:: : :: :: ::.:::: ... : . .:: ..::::.:.:::: ::....: . .
CCDS12 SGDLPPLGPATLLALCVQHSARELELGHLPRLLGRLARLIKEAVWEKIKEIGDRQPENHP
570 580 590 600 610 620
490 500 510 520 530 540
pF1KA1 EPISLASCAMADLVPDLQPILFWMSNSIELLYFIQQKCPLYMQSMEEQLDITGSKESLFS
: . . . . .:.:...::.:. ::: :.:.: . ::.. : ... .
CCDS12 EGVPEVPLTPEAVSVELRPLMLWMANTTELLSFVQEK----VLEMEKEAD---QEDPQLC
630 640 650 660 670
550 560 570 580 590 600
pF1KA1 CTLTASEEAMAVLEEVVLYAFQQCVYYVSKSLYICLPALLECPPFQTERRESWSSAPEL-
: .::::.:.::.. .::: :::..:.:: :::::. :: : : . . ::
CCDS12 NDLELCDEAMALLDEVIMCTFQQSVYYLTKTLYSTLPALLDSNPF-TAGAELPGPGAELG
680 690 700 710 720 730
610 620 630 640 650 660
pF1KA1 --PEELRRVVSVYQAALDLLRQLQVHPEVASQMLAYLFFFSGTLLLNQLLDRGPSLSCFH
: :: ...:.::::.: : ..::...:: ..::::::.. :::.:..:: . ..
CCDS12 AMPPGLRPTLGVFQAALELTSQCELHPDLVSQTFGYLFFFSNASLLNSLMERGQGRPFYQ
740 750 760 770 780 790
670 680 690 700 710 720
pF1KA1 WPRGVQACARLQQLLEWMRSAGFGAAGEHFFQKLSCTLNLLATPRAQLIQMSWTALRAAF
: :.:: . :. .:.:...::.: . .::.::: ..::: .::..:.. ::..::.
CCDS12 WSRAVQIRTNLDLVLDWLQGAGLGDIATEFFRKLSMAVNLLCVPRTSLLKASWSSLRTDH
800 810 820 830 840 850
730 740 750 760 770 780
pF1KA1 PALSPAQLHRLLTHYQLASAMGPMSTWEPGAQDSPEAFRSEDVLESYENPPPIVLPSDGF
:.:.:::::.::.::::. . :: ..:.: . :: . :..::. . ::..:: .
CCDS12 PTLTPAQLHHLLSHYQLGPGRGPPAAWDPPPAER-EAVDTGDIFESFSSHPPLILPLGSS
860 870 880 890 900 910
790 800 810 820 830 840
pF1KA1 QVDLEANCLDDSIYQHLLYVRHFLWGLRSRASPGSPGRPGSGASQPVCPEGMHHVVLDGH
.. : . ::.....: .:..:: :... :.. . :..:
CCDS12 RLRLTGPVTDDALHRELRRLRRLLWDLEQQELPANYRHGPPVATSP
920 930 940 950 960
850 860 870 880 890 900
pF1KA1 LEAPSCPLAPRDPGPAAREVAPERTLPLRGAPWAQAPPGRQPGRGGSQAGPPHTDSSCLL
1073 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:56:01 2016 done: Sat Nov 5 06:56:02 2016
Total Scan time: 4.600 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]